RNA–Protein interactions for RNA: ENST00000491142.1

HPS4-215, Transcript of HPS4, biogenesis of lysosomal organelles complex 3 subunit 2, humanhuman

TSL 2

Gene HPS4, Length 486 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HPS4-215ENST00000491142 AEBP2Q6ZN18 517 aaPredicted RBP21.94■■□□□ 1.1
HPS4-215ENST00000491142 NISCHQ9Y2I1 1504 aa21.37■■□□□ 1.01
HPS4-215ENST00000491142 CHIC1Q5VXU3 224 aa20.98■□□□□ 0.95
HPS4-215ENST00000491142 ABCC9O60706 1549 aa19.64■□□□□ 0.73
HPS4-215ENST00000491142 CCDC180Q9P1Z9 1646 aa19.23■□□□□ 0.67
HPS4-215ENST00000491142 DNAJC5BQ9UF47 199 aa18.76■□□□□ 0.59
HPS4-215ENST00000491142 SENP3Q9H4L4 574 aaPredicted RBP18.63■□□□□ 0.57
HPS4-215ENST00000491142 RB1CC1Q8TDY2 1594 aa18.49■□□□□ 0.55
HPS4-215ENST00000491142 PHF23Q9BUL5 403 aaPredicted RBP18.46■□□□□ 0.55
HPS4-215ENST00000491142 PABPN1Q86U42 306 aaKnown RBP eCLIP18.29■□□□□ 0.52
HPS4-215ENST00000491142 NACADO15069 1562 aa18.29■□□□□ 0.52
HPS4-215ENST00000491142 DCAF8L2P0C7V8 631 aa18.26■□□□□ 0.51
HPS4-215ENST00000491142 UNC13AQ9UPW8 1703 aa18.06■□□□□ 0.48
HPS4-215ENST00000491142 BICRAQ9NZM4 1560 aa18■□□□□ 0.47
HPS4-215ENST00000491142 MYO15BQ96JP2 1530 aa17.93■□□□□ 0.46
HPS4-215ENST00000491142 CECR2Q9BXF3 1484 aa17.7■□□□□ 0.42
HPS4-215ENST00000491142 CC2D2AQ9P2K1 1620 aa17.69■□□□□ 0.42
HPS4-215ENST00000491142 SHROOM4Q9ULL8 1493 aa17.65■□□□□ 0.42
HPS4-215ENST00000491142 ZCCHC6Q5VYS8 1495 aaKnown RBP17.63■□□□□ 0.41
HPS4-215ENST00000491142 DCAF1Q9Y4B6 1507 aa17.59■□□□□ 0.41
HPS4-215ENST00000491142 SCRIBQ14160 1630 aa17.58■□□□□ 0.4
HPS4-215ENST00000491142 EIF4G1Q04637 1599 aaKnown RBP17.57■□□□□ 0.4
HPS4-215ENST00000491142 DNAJC5Q9H3Z4 198 aa17.4■□□□□ 0.38
HPS4-215ENST00000491142 FOXD1Q16676 465 aa17.38■□□□□ 0.37
HPS4-215ENST00000491142 CUX2O14529 1486 aa16.99■□□□□ 0.31
HPS4-215ENST00000491142 ERCC6Q03468 1493 aa16.94■□□□□ 0.3
HPS4-215ENST00000491142 NCAPD3P42695 1498 aa16.93■□□□□ 0.3
HPS4-215ENST00000491142 PLPPR3Q6T4P5 718 aa16.84■□□□□ 0.29
HPS4-215ENST00000491142 ATAD2BQ9ULI0 1458 aa16.84■□□□□ 0.29
HPS4-215ENST00000491142 NESP48681 1621 aa16.79■□□□□ 0.28
HPS4-215ENST00000491142 HMGXB3Q12766 1538 aa16.73■□□□□ 0.27
HPS4-215ENST00000491142 SMARCA2P51531 1590 aa16.72■□□□□ 0.27
HPS4-215ENST00000491142 SMARCA4P51532 1647 aa16.71■□□□□ 0.27
HPS4-215ENST00000491142 BAZ1BQ9UIG0 1483 aaKnown RBP16.64■□□□□ 0.25
HPS4-215ENST00000491142 THOC2Q8NI27 1593 aaKnown RBP16.62■□□□□ 0.25
HPS4-215ENST00000491142 BAZ1AQ9NRL2 1556 aaPredicted RBP16.58■□□□□ 0.24
HPS4-215ENST00000491142 LAMC3Q9Y6N6 1575 aa16.55■□□□□ 0.24
HPS4-215ENST00000491142 TRIM41Q8WV44 630 aa16.54■□□□□ 0.24
HPS4-215ENST00000491142 PEG3Q9GZU2 1588 aa16.54■□□□□ 0.24
HPS4-215ENST00000491142 KIF21AQ7Z4S6 1674 aa16.5■□□□□ 0.23
HPS4-215ENST00000491142 PDS5BQ9NTI5 1447 aa16.5■□□□□ 0.23
HPS4-215ENST00000491142 MROH2BQ7Z745 1585 aa16.48■□□□□ 0.23
HPS4-215ENST00000491142 PPP6R1Q9UPN7 881 aa16.43■□□□□ 0.22
HPS4-215ENST00000491142 CADPSQ9ULU8 1353 aa16.41■□□□□ 0.22
HPS4-215ENST00000491142 ADRA2BP18089 450 aa16.38■□□□□ 0.21
HPS4-215ENST00000491142 MRC2Q9UBG0 1479 aa16.37■□□□□ 0.21
HPS4-215ENST00000491142 WDR62O43379 1518 aa16.33■□□□□ 0.2
HPS4-215ENST00000491142 PIAS4Q8N2W9 510 aaPredicted RBP16.26■□□□□ 0.19
HPS4-215ENST00000491142 WIZO95785 1651 aa16.25■□□□□ 0.19
HPS4-215ENST00000491142 CEP164Q9UPV0 1460 aa16.24■□□□□ 0.19
HPS4-215ENST00000491142 OSCARQ8IYS5 282 aa16.23■□□□□ 0.19
HPS4-215ENST00000491142 FANCD2Q9BXW9 1451 aa16.22■□□□□ 0.19
HPS4-215ENST00000491142 MSH5O43196 834 aa16.15■□□□□ 0.18
HPS4-215ENST00000491142 CFTRP13569 1480 aa16.15■□□□□ 0.18
HPS4-215ENST00000491142 URB2Q14146 1524 aaKnown RBP16.11■□□□□ 0.17
HPS4-215ENST00000491142 RSF1Q96T23 1441 aaPredicted RBP16.04■□□□□ 0.16
HPS4-215ENST00000491142 RIMBP3CA6NJZ7 1639 aa16.01■□□□□ 0.15
HPS4-215ENST00000491142 RIMBP3BA6NNM3 1639 aa16.01■□□□□ 0.15
HPS4-215ENST00000491142 RIMBP3Q9UFD9 1639 aa16.01■□□□□ 0.15
HPS4-215ENST00000491142 TOP2AP11388 1531 aaKnown RBP16■□□□□ 0.15
HPS4-215ENST00000491142 ZNF608Q9ULD9 1512 aaPredicted RBP15.98■□□□□ 0.15
HPS4-215ENST00000491142 ARHGEF11O15085 1522 aa15.94■□□□□ 0.14
HPS4-215ENST00000491142 IFT140Q96RY7 1462 aa15.93■□□□□ 0.14
HPS4-215ENST00000491142 CYB5RLQ6IPT4 315 aa15.9■□□□□ 0.14
HPS4-215ENST00000491142 CCDC88BA6NC98 1476 aa15.87■□□□□ 0.13
HPS4-215ENST00000491142 PRDM2Q13029 1718 aa15.87■□□□□ 0.13
HPS4-215ENST00000491142 TOPBP1Q92547 1522 aa15.87■□□□□ 0.13
HPS4-215ENST00000491142 TRHP20396 242 aaPredicted RBP15.82■□□□□ 0.12
HPS4-215ENST00000491142 EIF4G3O43432 1585 aaKnown RBP15.82■□□□□ 0.12
HPS4-215ENST00000491142 AQRO60306 1485 aaKnown RBP eCLIP15.81■□□□□ 0.12
HPS4-215ENST00000491142 ABCC8Q09428 1581 aa15.79■□□□□ 0.12
HPS4-215ENST00000491142 FBLN2P98095 1184 aa15.78■□□□□ 0.12
HPS4-215ENST00000491142 ARAP1Q96P48 1450 aa15.77■□□□□ 0.11
HPS4-215ENST00000491142 DNMBPQ6XZF7 1577 aa15.75■□□□□ 0.11
HPS4-215ENST00000491142 CHD1O14646 1710 aa15.75■□□□□ 0.11
HPS4-215ENST00000491142 TARBP1Q13395 1621 aaKnown RBP15.74■□□□□ 0.11
HPS4-215ENST00000491142 POLA1P09884 1462 aaPredicted RBP15.69■□□□□ 0.1
HPS4-215ENST00000491142 RAD54L2Q9Y4B4 1467 aa15.67■□□□□ 0.1
HPS4-215ENST00000491142 TDRD9Q8NDG6 1382 aaKnown RBP15.67■□□□□ 0.1
HPS4-215ENST00000491142 SOGA1O94964 1423 aa15.63■□□□□ 0.09
HPS4-215ENST00000491142 SNAPC4Q5SXM2 1469 aa15.6■□□□□ 0.09
HPS4-215ENST00000491142 CHMP7Q8WUX9 453 aaPredicted RBP15.59■□□□□ 0.09
HPS4-215ENST00000491142 CLASP1Q7Z460 1538 aa15.58■□□□□ 0.09
HPS4-215ENST00000491142 FGD5Q6ZNL6 1462 aa15.55■□□□□ 0.08
HPS4-215ENST00000491142 SYNJ1O43426 1573 aa15.53■□□□□ 0.08
HPS4-215ENST00000491142 MAGI1Q96QZ7 1491 aaPredicted RBP15.52■□□□□ 0.07
HPS4-215ENST00000491142 GRIN2BQ13224 1484 aa15.5■□□□□ 0.07
HPS4-215ENST00000491142 WDR97A6NE52 1622 aa15.5■□□□□ 0.07
HPS4-215ENST00000491142 CUX1P39880 1505 aa15.49■□□□□ 0.07
HPS4-215ENST00000491142 SYNJ2O15056 1496 aa15.49■□□□□ 0.07
HPS4-215ENST00000491142 POTEDQ86YR6 584 aa15.49■□□□□ 0.07
HPS4-215ENST00000491142 GAPVD1Q14C86 1478 aa15.46■□□□□ 0.06
HPS4-215ENST00000491142 PBRM1Q86U86 1689 aa15.38■□□□□ 0.05
HPS4-215ENST00000491142 ERCC6L2Q5T890 1561 aa15.36■□□□□ 0.05
HPS4-215ENST00000491142 ABCA10Q8WWZ4 1543 aa15.34■□□□□ 0.05
HPS4-215ENST00000491142 ABCA5Q8WWZ7 1642 aa15.32■□□□□ 0.04
HPS4-215ENST00000491142 GRIN2AQ12879 1464 aa15.31■□□□□ 0.04
HPS4-215ENST00000491142 CEP170Q5SW79 1584 aa15.28■□□□□ 0.04
HPS4-215ENST00000491142 NUP160Q12769 1436 aa15.27■□□□□ 0.04
HPS4-215ENST00000491142 WRNQ14191 1432 aaPredicted RBP eCLIP15.24■□□□□ 0.03
Retrieved 100 of 20,778 RNA–protein pairs in 45 ms