RNA–Protein interactions for RNA: ENST00000491060.1

TRAIP-211, Transcript of TRAF interacting protein, humanhuman

TSL 3

Gene TRAIP, Length 1,046 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRAIP-211ENST00000491060 NISCHQ9Y2I1 1504 aa33.38■■■□□ 2.93
TRAIP-211ENST00000491060 CCDC180Q9P1Z9 1646 aa29.78■■■□□ 2.36
TRAIP-211ENST00000491060 ABCC9O60706 1549 aa29.66■■■□□ 2.34
TRAIP-211ENST00000491060 DCAF8L2P0C7V8 631 aa28.36■■■□□ 2.13
TRAIP-211ENST00000491060 RB1CC1Q8TDY2 1594 aa28.22■■■□□ 2.11
TRAIP-211ENST00000491060 NACADO15069 1562 aa28.03■■■□□ 2.08
TRAIP-211ENST00000491060 UNC13AQ9UPW8 1703 aa27.75■■■□□ 2.03
TRAIP-211ENST00000491060 ZCCHC6Q5VYS8 1495 aaKnown RBP27.72■■■□□ 2.03
TRAIP-211ENST00000491060 PABPN1Q86U42 306 aaKnown RBP eCLIP27.71■■■□□ 2.03
TRAIP-211ENST00000491060 MYO15BQ96JP2 1530 aa27.58■■■□□ 2.01
TRAIP-211ENST00000491060 DNAJC5BQ9UF47 199 aa27.47■■□□□ 1.99
TRAIP-211ENST00000491060 DCAF1Q9Y4B6 1507 aa27.42■■□□□ 1.98
TRAIP-211ENST00000491060 BICRAQ9NZM4 1560 aa27.4■■□□□ 1.98
TRAIP-211ENST00000491060 SCRIBQ14160 1630 aa27.4■■□□□ 1.98
TRAIP-211ENST00000491060 SHROOM4Q9ULL8 1493 aa26.81■■□□□ 1.88
TRAIP-211ENST00000491060 CC2D2AQ9P2K1 1620 aa26.75■■□□□ 1.87
TRAIP-211ENST00000491060 EIF4G1Q04637 1599 aaKnown RBP26.71■■□□□ 1.87
TRAIP-211ENST00000491060 CECR2Q9BXF3 1484 aa26.58■■□□□ 1.85
TRAIP-211ENST00000491060 SMARCA4P51532 1647 aa26.03■■□□□ 1.76
TRAIP-211ENST00000491060 ATAD2BQ9ULI0 1458 aa25.91■■□□□ 1.74
TRAIP-211ENST00000491060 BAZ1AQ9NRL2 1556 aaPredicted RBP25.88■■□□□ 1.73
TRAIP-211ENST00000491060 NCAPD3P42695 1498 aa25.85■■□□□ 1.73
TRAIP-211ENST00000491060 SMARCA2P51531 1590 aa25.83■■□□□ 1.73
TRAIP-211ENST00000491060 MROH2BQ7Z745 1585 aa25.82■■□□□ 1.72
TRAIP-211ENST00000491060 BAZ1BQ9UIG0 1483 aaKnown RBP25.74■■□□□ 1.71
TRAIP-211ENST00000491060 HMGXB3Q12766 1538 aa25.72■■□□□ 1.71
TRAIP-211ENST00000491060 WIZO95785 1651 aa25.61■■□□□ 1.69
TRAIP-211ENST00000491060 PEG3Q9GZU2 1588 aa25.61■■□□□ 1.69
TRAIP-211ENST00000491060 NESP48681 1621 aa25.58■■□□□ 1.69
TRAIP-211ENST00000491060 ERCC6Q03468 1493 aa25.55■■□□□ 1.68
TRAIP-211ENST00000491060 RSF1Q96T23 1441 aaPredicted RBP25.34■■□□□ 1.65
TRAIP-211ENST00000491060 KIF21AQ7Z4S6 1674 aa25.29■■□□□ 1.64
TRAIP-211ENST00000491060 LAMC3Q9Y6N6 1575 aa25.27■■□□□ 1.64
TRAIP-211ENST00000491060 CUX2O14529 1486 aa25.2■■□□□ 1.62
TRAIP-211ENST00000491060 TOP2AP11388 1531 aaKnown RBP25.17■■□□□ 1.62
TRAIP-211ENST00000491060 THOC2Q8NI27 1593 aaKnown RBP25.15■■□□□ 1.62
TRAIP-211ENST00000491060 CADPSQ9ULU8 1353 aa25.14■■□□□ 1.61
TRAIP-211ENST00000491060 PDS5BQ9NTI5 1447 aa25.12■■□□□ 1.61
TRAIP-211ENST00000491060 MRC2Q9UBG0 1479 aa24.94■■□□□ 1.58
TRAIP-211ENST00000491060 FANCD2Q9BXW9 1451 aa24.93■■□□□ 1.58
TRAIP-211ENST00000491060 CCDC88BA6NC98 1476 aa24.92■■□□□ 1.58
TRAIP-211ENST00000491060 CEP164Q9UPV0 1460 aa24.92■■□□□ 1.58
TRAIP-211ENST00000491060 CFTRP13569 1480 aa24.89■■□□□ 1.58
TRAIP-211ENST00000491060 DNAJC5Q9H3Z4 198 aa24.84■■□□□ 1.57
TRAIP-211ENST00000491060 PRDM2Q13029 1718 aa24.83■■□□□ 1.57
TRAIP-211ENST00000491060 WDR62O43379 1518 aa24.82■■□□□ 1.56
TRAIP-211ENST00000491060 SUPT5HO00267 1087 aaKnown RBP24.75■■□□□ 1.55
TRAIP-211ENST00000491060 URB2Q14146 1524 aaKnown RBP24.72■■□□□ 1.55
TRAIP-211ENST00000491060 TOPBP1Q92547 1522 aa24.5■■□□□ 1.51
TRAIP-211ENST00000491060 DNMBPQ6XZF7 1577 aa24.42■■□□□ 1.5
TRAIP-211ENST00000491060 ZNF608Q9ULD9 1512 aaPredicted RBP24.4■■□□□ 1.5
TRAIP-211ENST00000491060 IFT140Q96RY7 1462 aa24.36■■□□□ 1.49
TRAIP-211ENST00000491060 ABCC8Q09428 1581 aa24.33■■□□□ 1.48
TRAIP-211ENST00000491060 EIF4G3O43432 1585 aaKnown RBP24.28■■□□□ 1.48
TRAIP-211ENST00000491060 RAD54L2Q9Y4B4 1467 aa24.27■■□□□ 1.48
TRAIP-211ENST00000491060 POLA1P09884 1462 aaPredicted RBP24.26■■□□□ 1.47
TRAIP-211ENST00000491060 TARBP1Q13395 1621 aaKnown RBP24.24■■□□□ 1.47
TRAIP-211ENST00000491060 AQRO60306 1485 aaKnown RBP eCLIP24.23■■□□□ 1.47
TRAIP-211ENST00000491060 CUX1P39880 1505 aa24.23■■□□□ 1.47
TRAIP-211ENST00000491060 FGD5Q6ZNL6 1462 aa24.2■■□□□ 1.47
TRAIP-211ENST00000491060 OSCARQ8IYS5 282 aa24.19■■□□□ 1.46
TRAIP-211ENST00000491060 TRIM41Q8WV44 630 aa24.19■■□□□ 1.46
TRAIP-211ENST00000491060 SOGA1O94964 1423 aa24.17■■□□□ 1.46
TRAIP-211ENST00000491060 TDRD9Q8NDG6 1382 aaKnown RBP24.15■■□□□ 1.46
TRAIP-211ENST00000491060 CHD1O14646 1710 aa24.13■■□□□ 1.45
TRAIP-211ENST00000491060 FBLN2P98095 1184 aa24.12■■□□□ 1.45
TRAIP-211ENST00000491060 WDR97A6NE52 1622 aa24■■□□□ 1.43
TRAIP-211ENST00000491060 SNAPC4Q5SXM2 1469 aa23.99■■□□□ 1.43
TRAIP-211ENST00000491060 SYNJ1O43426 1573 aa23.97■■□□□ 1.43
TRAIP-211ENST00000491060 PBRM1Q86U86 1689 aa23.96■■□□□ 1.43
TRAIP-211ENST00000491060 RIMBP3CA6NJZ7 1639 aa23.94■■□□□ 1.42
TRAIP-211ENST00000491060 RIMBP3BA6NNM3 1639 aa23.94■■□□□ 1.42
TRAIP-211ENST00000491060 RIMBP3Q9UFD9 1639 aa23.94■■□□□ 1.42
TRAIP-211ENST00000491060 WRNQ14191 1432 aaPredicted RBP eCLIP23.93■■□□□ 1.42
TRAIP-211ENST00000491060 BIVM-ERCC5R4GMW8 1640 aa23.9■■□□□ 1.42
TRAIP-211ENST00000491060 TOP2BQ02880 1626 aa23.88■■□□□ 1.41
TRAIP-211ENST00000491060 GRIN2BQ13224 1484 aa23.87■■□□□ 1.41
TRAIP-211ENST00000491060 GAPVD1Q14C86 1478 aa23.87■■□□□ 1.41
TRAIP-211ENST00000491060 CHMP7Q8WUX9 453 aaPredicted RBP23.87■■□□□ 1.41
TRAIP-211ENST00000491060 ABCA5Q8WWZ7 1642 aa23.84■■□□□ 1.41
TRAIP-211ENST00000491060 ABCA10Q8WWZ4 1543 aa23.84■■□□□ 1.41
TRAIP-211ENST00000491060 ARHGEF11O15085 1522 aa23.83■■□□□ 1.41
TRAIP-211ENST00000491060 MAGI1Q96QZ7 1491 aaPredicted RBP23.8■■□□□ 1.4
TRAIP-211ENST00000491060 SYNJ2O15056 1496 aa23.75■■□□□ 1.39
TRAIP-211ENST00000491060 CYB5RLQ6IPT4 315 aa23.73■■□□□ 1.39
TRAIP-211ENST00000491060 CLASP1Q7Z460 1538 aa23.68■■□□□ 1.38
TRAIP-211ENST00000491060 ADAMTS12P58397 1594 aa23.66■■□□□ 1.38
TRAIP-211ENST00000491060 ARAP1Q96P48 1450 aa23.63■■□□□ 1.37
TRAIP-211ENST00000491060 GRIN2AQ12879 1464 aa23.59■■□□□ 1.37
TRAIP-211ENST00000491060 CEP170Q5SW79 1584 aa23.56■■□□□ 1.36
TRAIP-211ENST00000491060 ERICH3Q5RHP9 1530 aa23.54■■□□□ 1.36
TRAIP-211ENST00000491060 FHAD1B1AJZ9 1412 aa23.53■■□□□ 1.36
TRAIP-211ENST00000491060 ERCC6L2Q5T890 1561 aa23.49■■□□□ 1.35
TRAIP-211ENST00000491060 TRHP20396 242 aaPredicted RBP23.43■■□□□ 1.34
TRAIP-211ENST00000491060 NUP160Q12769 1436 aa23.42■■□□□ 1.34
TRAIP-211ENST00000491060 KIF27Q86VH2 1401 aa23.42■■□□□ 1.34
TRAIP-211ENST00000491060 IGF1RP08069 1367 aa23.35■■□□□ 1.33
TRAIP-211ENST00000491060 CUL7Q14999 1698 aa23.33■■□□□ 1.33
TRAIP-211ENST00000491060 SHROOM2Q13796 1616 aa23.33■■□□□ 1.32
TRAIP-211ENST00000491060 RUSC2Q8N2Y8 1516 aa23.31■■□□□ 1.32
Retrieved 100 of 20,778 RNA–protein pairs in 965.2 ms