RNA–Protein interactions for RNA: ENST00000491052.5

LIMK1-207, Transcript of LIM domain kinase 1, humanhuman

TSL 4

Gene LIMK1, Length 587 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMK1-207ENST00000491052 NISCHQ9Y2I1 1504 aa31.03■■■□□ 2.56
LIMK1-207ENST00000491052 CCDC180Q9P1Z9 1646 aa27.67■■■□□ 2.02
LIMK1-207ENST00000491052 ABCC9O60706 1549 aa26.89■■□□□ 1.89
LIMK1-207ENST00000491052 RB1CC1Q8TDY2 1594 aa25.94■■□□□ 1.74
LIMK1-207ENST00000491052 NACADO15069 1562 aa25.9■■□□□ 1.74
LIMK1-207ENST00000491052 ZCCHC6Q5VYS8 1495 aaKnown RBP25.88■■□□□ 1.73
LIMK1-207ENST00000491052 DCAF8L2P0C7V8 631 aa25.86■■□□□ 1.73
LIMK1-207ENST00000491052 MYO15BQ96JP2 1530 aa25.72■■□□□ 1.71
LIMK1-207ENST00000491052 DCAF1Q9Y4B6 1507 aa25.67■■□□□ 1.7
LIMK1-207ENST00000491052 UNC13AQ9UPW8 1703 aa25.51■■□□□ 1.67
LIMK1-207ENST00000491052 SCRIBQ14160 1630 aa25.24■■□□□ 1.63
LIMK1-207ENST00000491052 BICRAQ9NZM4 1560 aa25.14■■□□□ 1.61
LIMK1-207ENST00000491052 PABPN1Q86U42 306 aaKnown RBP eCLIP25.08■■□□□ 1.61
LIMK1-207ENST00000491052 SHROOM4Q9ULL8 1493 aa24.83■■□□□ 1.57
LIMK1-207ENST00000491052 DNAJC5BQ9UF47 199 aa24.48■■□□□ 1.51
LIMK1-207ENST00000491052 EIF4G1Q04637 1599 aaKnown RBP24.46■■□□□ 1.51
LIMK1-207ENST00000491052 CC2D2AQ9P2K1 1620 aa24.37■■□□□ 1.49
LIMK1-207ENST00000491052 CECR2Q9BXF3 1484 aa24.15■■□□□ 1.46
LIMK1-207ENST00000491052 SMARCA4P51532 1647 aa24.13■■□□□ 1.45
LIMK1-207ENST00000491052 BAZ1AQ9NRL2 1556 aaPredicted RBP24.08■■□□□ 1.44
LIMK1-207ENST00000491052 MROH2BQ7Z745 1585 aa23.93■■□□□ 1.42
LIMK1-207ENST00000491052 SMARCA2P51531 1590 aa23.91■■□□□ 1.42
LIMK1-207ENST00000491052 ATAD2BQ9ULI0 1458 aa23.88■■□□□ 1.41
LIMK1-207ENST00000491052 PEG3Q9GZU2 1588 aa23.84■■□□□ 1.41
LIMK1-207ENST00000491052 NCAPD3P42695 1498 aa23.82■■□□□ 1.4
LIMK1-207ENST00000491052 HMGXB3Q12766 1538 aa23.79■■□□□ 1.4
LIMK1-207ENST00000491052 WIZO95785 1651 aa23.76■■□□□ 1.39
LIMK1-207ENST00000491052 BAZ1BQ9UIG0 1483 aaKnown RBP23.74■■□□□ 1.39
LIMK1-207ENST00000491052 RSF1Q96T23 1441 aaPredicted RBP23.64■■□□□ 1.37
LIMK1-207ENST00000491052 TOP2AP11388 1531 aaKnown RBP23.47■■□□□ 1.35
LIMK1-207ENST00000491052 NESP48681 1621 aa23.3■■□□□ 1.32
LIMK1-207ENST00000491052 LAMC3Q9Y6N6 1575 aa23.27■■□□□ 1.32
LIMK1-207ENST00000491052 ERCC6Q03468 1493 aa23.18■■□□□ 1.3
LIMK1-207ENST00000491052 KIF21AQ7Z4S6 1674 aa23.16■■□□□ 1.3
LIMK1-207ENST00000491052 SUPT5HO00267 1087 aaKnown RBP23.14■■□□□ 1.29
LIMK1-207ENST00000491052 CCDC88BA6NC98 1476 aa23.13■■□□□ 1.29
LIMK1-207ENST00000491052 PRDM2Q13029 1718 aa23.13■■□□□ 1.29
LIMK1-207ENST00000491052 CADPSQ9ULU8 1353 aa23.13■■□□□ 1.29
LIMK1-207ENST00000491052 PDS5BQ9NTI5 1447 aa23.05■■□□□ 1.28
LIMK1-207ENST00000491052 CFTRP13569 1480 aa23.04■■□□□ 1.28
LIMK1-207ENST00000491052 THOC2Q8NI27 1593 aaKnown RBP22.98■■□□□ 1.27
LIMK1-207ENST00000491052 FANCD2Q9BXW9 1451 aa22.93■■□□□ 1.26
LIMK1-207ENST00000491052 CEP164Q9UPV0 1460 aa22.92■■□□□ 1.26
LIMK1-207ENST00000491052 CUX2O14529 1486 aa22.86■■□□□ 1.25
LIMK1-207ENST00000491052 MRC2Q9UBG0 1479 aa22.85■■□□□ 1.25
LIMK1-207ENST00000491052 WDR62O43379 1518 aa22.78■■□□□ 1.24
LIMK1-207ENST00000491052 URB2Q14146 1524 aaKnown RBP22.7■■□□□ 1.22
LIMK1-207ENST00000491052 DNMBPQ6XZF7 1577 aa22.6■■□□□ 1.21
LIMK1-207ENST00000491052 TOPBP1Q92547 1522 aa22.59■■□□□ 1.21
LIMK1-207ENST00000491052 ABCC8Q09428 1581 aa22.56■■□□□ 1.2
LIMK1-207ENST00000491052 CUX1P39880 1505 aa22.46■■□□□ 1.19
LIMK1-207ENST00000491052 IFT140Q96RY7 1462 aa22.4■■□□□ 1.18
LIMK1-207ENST00000491052 POLA1P09884 1462 aaPredicted RBP22.39■■□□□ 1.17
LIMK1-207ENST00000491052 FGD5Q6ZNL6 1462 aa22.37■■□□□ 1.17
LIMK1-207ENST00000491052 TARBP1Q13395 1621 aaKnown RBP22.37■■□□□ 1.17
LIMK1-207ENST00000491052 BIVM-ERCC5R4GMW8 1640 aa22.35■■□□□ 1.17
LIMK1-207ENST00000491052 SYNJ1O43426 1573 aa22.33■■□□□ 1.17
LIMK1-207ENST00000491052 WRNQ14191 1432 aaPredicted RBP eCLIP22.32■■□□□ 1.16
LIMK1-207ENST00000491052 TOP2BQ02880 1626 aa22.31■■□□□ 1.16
LIMK1-207ENST00000491052 EIF4G3O43432 1585 aaKnown RBP22.3■■□□□ 1.16
LIMK1-207ENST00000491052 ZNF608Q9ULD9 1512 aaPredicted RBP22.3■■□□□ 1.16
LIMK1-207ENST00000491052 RAD54L2Q9Y4B4 1467 aa22.28■■□□□ 1.16
LIMK1-207ENST00000491052 WDR97A6NE52 1622 aa22.28■■□□□ 1.16
LIMK1-207ENST00000491052 SOGA1O94964 1423 aa22.27■■□□□ 1.16
LIMK1-207ENST00000491052 AQRO60306 1485 aaKnown RBP eCLIP22.15■■□□□ 1.142e-7■■■■■ 36.2
LIMK1-207ENST00000491052 PBRM1Q86U86 1689 aa22.15■■□□□ 1.14
LIMK1-207ENST00000491052 TDRD9Q8NDG6 1382 aaKnown RBP22.12■■□□□ 1.13
LIMK1-207ENST00000491052 ABCA10Q8WWZ4 1543 aa22.12■■□□□ 1.13
LIMK1-207ENST00000491052 ABCA5Q8WWZ7 1642 aa22.11■■□□□ 1.13
LIMK1-207ENST00000491052 CHD1O14646 1710 aa22.08■■□□□ 1.12
LIMK1-207ENST00000491052 GAPVD1Q14C86 1478 aa22.04■■□□□ 1.12
LIMK1-207ENST00000491052 GRIN2BQ13224 1484 aa22.02■■□□□ 1.12
LIMK1-207ENST00000491052 SNAPC4Q5SXM2 1469 aa22■■□□□ 1.11
LIMK1-207ENST00000491052 MAGI1Q96QZ7 1491 aaPredicted RBP21.96■■□□□ 1.11
LIMK1-207ENST00000491052 DNAJC5Q9H3Z4 198 aa21.96■■□□□ 1.11
LIMK1-207ENST00000491052 ADAMTS12P58397 1594 aa21.89■■□□□ 1.09
LIMK1-207ENST00000491052 ERICH3Q5RHP9 1530 aa21.89■■□□□ 1.09
LIMK1-207ENST00000491052 FBLN2P98095 1184 aa21.88■■□□□ 1.09
LIMK1-207ENST00000491052 OSCARQ8IYS5 282 aa21.87■■□□□ 1.09
LIMK1-207ENST00000491052 SYNJ2O15056 1496 aa21.87■■□□□ 1.09
LIMK1-207ENST00000491052 KIF27Q86VH2 1401 aa21.84■■□□□ 1.09
LIMK1-207ENST00000491052 TRIM41Q8WV44 630 aa21.83■■□□□ 1.09
LIMK1-207ENST00000491052 CHMP7Q8WUX9 453 aaPredicted RBP21.81■■□□□ 1.08
LIMK1-207ENST00000491052 CUL7Q14999 1698 aa21.79■■□□□ 1.08
LIMK1-207ENST00000491052 FHAD1B1AJZ9 1412 aa21.77■■□□□ 1.08
LIMK1-207ENST00000491052 GRIN2AQ12879 1464 aa21.76■■□□□ 1.07
LIMK1-207ENST00000491052 CLASP1Q7Z460 1538 aa21.71■■□□□ 1.07
LIMK1-207ENST00000491052 RUSC2Q8N2Y8 1516 aa21.69■■□□□ 1.06
LIMK1-207ENST00000491052 IGF1RP08069 1367 aa21.68■■□□□ 1.06
LIMK1-207ENST00000491052 CEP170Q5SW79 1584 aa21.68■■□□□ 1.06
LIMK1-207ENST00000491052 RIMBP3CA6NJZ7 1639 aa21.66■■□□□ 1.06
LIMK1-207ENST00000491052 RIMBP3BA6NNM3 1639 aa21.66■■□□□ 1.06
LIMK1-207ENST00000491052 RIMBP3Q9UFD9 1639 aa21.66■■□□□ 1.06
LIMK1-207ENST00000491052 NUP160Q12769 1436 aa21.62■■□□□ 1.05
LIMK1-207ENST00000491052 ARHGEF11O15085 1522 aa21.61■■□□□ 1.05
LIMK1-207ENST00000491052 CHIC1Q5VXU3 224 aa21.6■■□□□ 1.05
LIMK1-207ENST00000491052 CARMIL1Q5VZK9 1371 aa21.59■■□□□ 1.05
LIMK1-207ENST00000491052 SHROOM2Q13796 1616 aa21.52■■□□□ 1.04
LIMK1-207ENST00000491052 RAPGEF2Q9Y4G8 1499 aa21.51■■□□□ 1.03
LIMK1-207ENST00000491052 EEA1Q15075 1411 aa21.48■■□□□ 1.03
Retrieved 100 of 20,778 RNA–protein pairs in 11.7 ms