RNA–Protein interactions for RNA: ENST00000491028.1

MCF2L-230, Transcript of MCF.2 cell line derived transforming sequence like, humanhuman

TSL 4

Gene MCF2L, Length 573 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2L-230ENST00000491028 NISCHQ9Y2I1 1504 aa43.99■■■■■ 4.63
MCF2L-230ENST00000491028 CCDC180Q9P1Z9 1646 aa38.89■■■■□ 3.82
MCF2L-230ENST00000491028 ABCC9O60706 1549 aa37.2■■■■□ 3.55
MCF2L-230ENST00000491028 ZCCHC6Q5VYS8 1495 aaKnown RBP36.83■■■■□ 3.49
MCF2L-230ENST00000491028 DCAF1Q9Y4B6 1507 aa36.5■■■■□ 3.43
MCF2L-230ENST00000491028 MYO15BQ96JP2 1530 aa36.39■■■■□ 3.42
MCF2L-230ENST00000491028 NACADO15069 1562 aa36.34■■■■□ 3.41
MCF2L-230ENST00000491028 DCAF8L2P0C7V8 631 aa36.3■■■■□ 3.4
MCF2L-230ENST00000491028 RB1CC1Q8TDY2 1594 aa36.2■■■■□ 3.39
MCF2L-230ENST00000491028 SCRIBQ14160 1630 aa35.46■■■■□ 3.27
MCF2L-230ENST00000491028 UNC13AQ9UPW8 1703 aa35.41■■■■□ 3.26
MCF2L-230ENST00000491028 SHROOM4Q9ULL8 1493 aa35.09■■■■□ 3.21
MCF2L-230ENST00000491028 BICRAQ9NZM4 1560 aa35.05■■■■□ 3.2
MCF2L-230ENST00000491028 PABPN1Q86U42 306 aaKnown RBP eCLIP34.81■■■■□ 3.16
MCF2L-230ENST00000491028 CECR2Q9BXF3 1484 aa34.14■■■■□ 3.06
MCF2L-230ENST00000491028 BAZ1AQ9NRL2 1556 aaPredicted RBP34.09■■■■□ 3.05
MCF2L-230ENST00000491028 EIF4G1Q04637 1599 aaKnown RBP34.07■■■■□ 3.05
MCF2L-230ENST00000491028 SMARCA4P51532 1647 aa34.01■■■■□ 3.04
MCF2L-230ENST00000491028 MROH2BQ7Z745 1585 aa33.89■■■■□ 3.02
MCF2L-230ENST00000491028 DNAJC5BQ9UF47 199 aa33.87■■■■□ 3.01
MCF2L-230ENST00000491028 RSF1Q96T23 1441 aaPredicted RBP33.76■■■□□ 2.99
MCF2L-230ENST00000491028 CC2D2AQ9P2K1 1620 aa33.74■■■□□ 2.99
MCF2L-230ENST00000491028 PEG3Q9GZU2 1588 aa33.69■■■□□ 2.98
MCF2L-230ENST00000491028 SMARCA2P51531 1590 aa33.64■■■□□ 2.98
MCF2L-230ENST00000491028 ATAD2BQ9ULI0 1458 aa33.6■■■□□ 2.97
MCF2L-230ENST00000491028 WIZO95785 1651 aa33.59■■■□□ 2.97
MCF2L-230ENST00000491028 NCAPD3P42695 1498 aa33.48■■■□□ 2.95
MCF2L-230ENST00000491028 HMGXB3Q12766 1538 aa33.44■■■□□ 2.94
MCF2L-230ENST00000491028 BAZ1BQ9UIG0 1483 aaKnown RBP33.38■■■□□ 2.93
MCF2L-230ENST00000491028 SUPT5HO00267 1087 aaKnown RBP33.36■■■□□ 2.93
MCF2L-230ENST00000491028 TOP2AP11388 1531 aaKnown RBP33.32■■■□□ 2.92
MCF2L-230ENST00000491028 CCDC88BA6NC98 1476 aa32.85■■■□□ 2.85
MCF2L-230ENST00000491028 LAMC3Q9Y6N6 1575 aa32.53■■■□□ 2.8
MCF2L-230ENST00000491028 CADPSQ9ULU8 1353 aa32.52■■■□□ 2.8
MCF2L-230ENST00000491028 CFTRP13569 1480 aa32.51■■■□□ 2.79
MCF2L-230ENST00000491028 PRDM2Q13029 1718 aa32.44■■■□□ 2.78
MCF2L-230ENST00000491028 NESP48681 1621 aa32.4■■■□□ 2.78
MCF2L-230ENST00000491028 PDS5BQ9NTI5 1447 aa32.24■■■□□ 2.75
MCF2L-230ENST00000491028 FANCD2Q9BXW9 1451 aa32.16■■■□□ 2.74
MCF2L-230ENST00000491028 KIF21AQ7Z4S6 1674 aa32.13■■■□□ 2.73
MCF2L-230ENST00000491028 CEP164Q9UPV0 1460 aa32.08■■■□□ 2.73
MCF2L-230ENST00000491028 ERCC6Q03468 1493 aa32.03■■■□□ 2.72
MCF2L-230ENST00000491028 ABCC8Q09428 1581 aa31.89■■■□□ 2.7
MCF2L-230ENST00000491028 MRC2Q9UBG0 1479 aa31.88■■■□□ 2.69
MCF2L-230ENST00000491028 THOC2Q8NI27 1593 aaKnown RBP31.85■■■□□ 2.69
MCF2L-230ENST00000491028 WRNQ14191 1432 aaPredicted RBP eCLIP31.83■■■□□ 2.69
MCF2L-230ENST00000491028 DNMBPQ6XZF7 1577 aa31.81■■■□□ 2.68
MCF2L-230ENST00000491028 URB2Q14146 1524 aaKnown RBP31.8■■■□□ 2.68
MCF2L-230ENST00000491028 WDR62O43379 1518 aa31.77■■■□□ 2.68
MCF2L-230ENST00000491028 CUX1P39880 1505 aa31.77■■■□□ 2.68
MCF2L-230ENST00000491028 BIVM-ERCC5R4GMW8 1640 aa31.75■■■□□ 2.67
MCF2L-230ENST00000491028 TOPBP1Q92547 1522 aa31.75■■■□□ 2.67
MCF2L-230ENST00000491028 SYNJ1O43426 1573 aa31.73■■■□□ 2.67
MCF2L-230ENST00000491028 TOP2BQ02880 1626 aa31.73■■■□□ 2.67
MCF2L-230ENST00000491028 CHIC1Q5VXU3 224 aa31.6■■■□□ 2.65
MCF2L-230ENST00000491028 FGD5Q6ZNL6 1462 aa31.55■■■□□ 2.64
MCF2L-230ENST00000491028 POLA1P09884 1462 aaPredicted RBP31.52■■■□□ 2.64
MCF2L-230ENST00000491028 TRIM41Q8WV44 630 aa31.51■■■□□ 2.63
MCF2L-230ENST00000491028 CUX2O14529 1486 aa31.48■■■□□ 2.63
MCF2L-230ENST00000491028 IFT140Q96RY7 1462 aa31.38■■■□□ 2.61
MCF2L-230ENST00000491028 SOGA1O94964 1423 aa31.37■■■□□ 2.61
MCF2L-230ENST00000491028 TARBP1Q13395 1621 aaKnown RBP31.36■■■□□ 2.61
MCF2L-230ENST00000491028 WDR97A6NE52 1622 aa31.34■■■□□ 2.61
MCF2L-230ENST00000491028 RAD54L2Q9Y4B4 1467 aa31.33■■■□□ 2.61
MCF2L-230ENST00000491028 DNAJC5Q9H3Z4 198 aa31.32■■■□□ 2.6
MCF2L-230ENST00000491028 ABCA10Q8WWZ4 1543 aa31.29■■■□□ 2.6
MCF2L-230ENST00000491028 ABCA5Q8WWZ7 1642 aa31.14■■■□□ 2.58
MCF2L-230ENST00000491028 KIF27Q86VH2 1401 aa31.12■■■□□ 2.57
MCF2L-230ENST00000491028 EIF4G3O43432 1585 aaKnown RBP31.11■■■□□ 2.57
MCF2L-230ENST00000491028 ZNF608Q9ULD9 1512 aaPredicted RBP31.11■■■□□ 2.57
MCF2L-230ENST00000491028 TDRD9Q8NDG6 1382 aaKnown RBP31.07■■■□□ 2.56
MCF2L-230ENST00000491028 EEA1Q15075 1411 aa31.06■■■□□ 2.56
MCF2L-230ENST00000491028 GAPVD1Q14C86 1478 aa31.05■■■□□ 2.56
MCF2L-230ENST00000491028 AQRO60306 1485 aaKnown RBP eCLIP31.01■■■□□ 2.56
MCF2L-230ENST00000491028 PBRM1Q86U86 1689 aa31.01■■■□□ 2.55
MCF2L-230ENST00000491028 RUSC2Q8N2Y8 1516 aa30.99■■■□□ 2.55
MCF2L-230ENST00000491028 ERICH3Q5RHP9 1530 aa30.96■■■□□ 2.55
MCF2L-230ENST00000491028 GRIN2BQ13224 1484 aa30.95■■■□□ 2.55
MCF2L-230ENST00000491028 CUL7Q14999 1698 aa30.85■■■□□ 2.53
MCF2L-230ENST00000491028 IGF1RP08069 1367 aa30.84■■■□□ 2.53
MCF2L-230ENST00000491028 MAGI1Q96QZ7 1491 aaPredicted RBP30.82■■■□□ 2.53
MCF2L-230ENST00000491028 SNAPC4Q5SXM2 1469 aa30.81■■■□□ 2.52
MCF2L-230ENST00000491028 CSRNP3Q8WYN3 585 aa30.8■■■□□ 2.52
MCF2L-230ENST00000491028 FAM9AQ8IZU1 332 aaPredicted RBP30.79■■■□□ 2.52
MCF2L-230ENST00000491028 ADAMTS12P58397 1594 aa30.79■■■□□ 2.52
MCF2L-230ENST00000491028 FHAD1B1AJZ9 1412 aa30.73■■■□□ 2.51
MCF2L-230ENST00000491028 PRXQ9BXM0 1461 aa30.7■■■□□ 2.51
MCF2L-230ENST00000491028 CARMIL1Q5VZK9 1371 aa30.7■■■□□ 2.51
MCF2L-230ENST00000491028 KIF21BO75037 1637 aa30.69■■■□□ 2.5
MCF2L-230ENST00000491028 SYNJ2O15056 1496 aa30.67■■■□□ 2.5
MCF2L-230ENST00000491028 RAPGEF2Q9Y4G8 1499 aa30.63■■■□□ 2.49
MCF2L-230ENST00000491028 CHD1O14646 1710 aa30.58■■■□□ 2.49
MCF2L-230ENST00000491028 GRIN2AQ12879 1464 aa30.57■■■□□ 2.48
MCF2L-230ENST00000491028 GOLGA3Q08378 1498 aa30.53■■■□□ 2.48
MCF2L-230ENST00000491028 CHMP7Q8WUX9 453 aaPredicted RBP30.53■■■□□ 2.48
MCF2L-230ENST00000491028 FBLN2P98095 1184 aa30.46■■■□□ 2.47
MCF2L-230ENST00000491028 CTTNBP2Q8WZ74 1663 aa30.39■■■□□ 2.46
MCF2L-230ENST00000491028 NUP160Q12769 1436 aa30.39■■■□□ 2.46
MCF2L-230ENST00000491028 CEP170Q5SW79 1584 aa30.38■■■□□ 2.45
MCF2L-230ENST00000491028 EHMT2Q96KQ7 1210 aa30.29■■■□□ 2.44
Retrieved 100 of 20,778 RNA–protein pairs in 110.5 ms