RNA–Protein interactions for RNA: ENST00000490990.1

RGPD6-211, Transcript of RANBP2-like and GRIP domain containing 6, humanhuman

TSL 4

Gene RGPD6, Length 541 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RGPD6-211ENST00000490990 NISCHQ9Y2I1 1504 aa51.47■■■■■ 5.83
RGPD6-211ENST00000490990 CCDC180Q9P1Z9 1646 aa45.92■■■■■ 4.94
RGPD6-211ENST00000490990 ABCC9O60706 1549 aa45.19■■■■■ 4.82
RGPD6-211ENST00000490990 RB1CC1Q8TDY2 1594 aa43.35■■■■■ 4.53
RGPD6-211ENST00000490990 NACADO15069 1562 aa43.23■■■■■ 4.51
RGPD6-211ENST00000490990 DCAF8L2P0C7V8 631 aa43.03■■■■■ 4.48
RGPD6-211ENST00000490990 MYO15BQ96JP2 1530 aa42.89■■■■■ 4.46
RGPD6-211ENST00000490990 ZCCHC6Q5VYS8 1495 aaKnown RBP42.81■■■■■ 4.44
RGPD6-211ENST00000490990 DCAF1Q9Y4B6 1507 aa42.58■■■■■ 4.41
RGPD6-211ENST00000490990 UNC13AQ9UPW8 1703 aa42.43■■■■■ 4.38
RGPD6-211ENST00000490990 PABPN1Q86U42 306 aaKnown RBP eCLIP42.15■■■■■ 4.34
RGPD6-211ENST00000490990 BICRAQ9NZM4 1560 aa42.09■■■■■ 4.33
RGPD6-211ENST00000490990 SCRIBQ14160 1630 aa41.84■■■■■ 4.29
RGPD6-211ENST00000490990 DNAJC5BQ9UF47 199 aa41.78■■■■■ 4.28
RGPD6-211ENST00000490990 SHROOM4Q9ULL8 1493 aa41.6■■■■■ 4.25
RGPD6-211ENST00000490990 EIF4G1Q04637 1599 aaKnown RBP40.98■■■■■ 4.15
RGPD6-211ENST00000490990 CC2D2AQ9P2K1 1620 aa40.89■■■■■ 4.14
RGPD6-211ENST00000490990 CECR2Q9BXF3 1484 aa40.64■■■■■ 4.1
RGPD6-211ENST00000490990 SMARCA4P51532 1647 aa40.02■■■■■ 4
RGPD6-211ENST00000490990 BAZ1AQ9NRL2 1556 aaPredicted RBP39.91■■■■□ 3.98
RGPD6-211ENST00000490990 NCAPD3P42695 1498 aa39.89■■■■□ 3.98
RGPD6-211ENST00000490990 ATAD2BQ9ULI0 1458 aa39.86■■■■□ 3.97
RGPD6-211ENST00000490990 SMARCA2P51531 1590 aa39.8■■■■□ 3.96
RGPD6-211ENST00000490990 HMGXB3Q12766 1538 aa39.68■■■■□ 3.94
RGPD6-211ENST00000490990 MROH2BQ7Z745 1585 aa39.67■■■■□ 3.94
RGPD6-211ENST00000490990 PEG3Q9GZU2 1588 aa39.64■■■■□ 3.94
RGPD6-211ENST00000490990 BAZ1BQ9UIG0 1483 aaKnown RBP39.5■■■■□ 3.91
RGPD6-211ENST00000490990 WIZO95785 1651 aa39.22■■■■□ 3.87
RGPD6-211ENST00000490990 RSF1Q96T23 1441 aaPredicted RBP39.08■■■■□ 3.85
RGPD6-211ENST00000490990 NESP48681 1621 aa39.03■■■■□ 3.84
RGPD6-211ENST00000490990 ERCC6Q03468 1493 aa38.96■■■■□ 3.83
RGPD6-211ENST00000490990 LAMC3Q9Y6N6 1575 aa38.9■■■■□ 3.82
RGPD6-211ENST00000490990 TOP2AP11388 1531 aaKnown RBP38.79■■■■□ 3.8
RGPD6-211ENST00000490990 CUX2O14529 1486 aa38.7■■■■□ 3.79
RGPD6-211ENST00000490990 CADPSQ9ULU8 1353 aa38.7■■■■□ 3.78
RGPD6-211ENST00000490990 PDS5BQ9NTI5 1447 aa38.61■■■■□ 3.77
RGPD6-211ENST00000490990 KIF21AQ7Z4S6 1674 aa38.58■■■■□ 3.77
RGPD6-211ENST00000490990 THOC2Q8NI27 1593 aaKnown RBP38.54■■■■□ 3.76
RGPD6-211ENST00000490990 CFTRP13569 1480 aa38.42■■■■□ 3.74
RGPD6-211ENST00000490990 CCDC88BA6NC98 1476 aa38.32■■■■□ 3.72
RGPD6-211ENST00000490990 FANCD2Q9BXW9 1451 aa38.25■■■■□ 3.71
RGPD6-211ENST00000490990 MRC2Q9UBG0 1479 aa38.25■■■■□ 3.71
RGPD6-211ENST00000490990 CEP164Q9UPV0 1460 aa38.23■■■■□ 3.71
RGPD6-211ENST00000490990 WDR62O43379 1518 aa38.16■■■■□ 3.7
RGPD6-211ENST00000490990 PRDM2Q13029 1718 aa38.15■■■■□ 3.7
RGPD6-211ENST00000490990 URB2Q14146 1524 aaKnown RBP37.91■■■■□ 3.66
RGPD6-211ENST00000490990 DNAJC5Q9H3Z4 198 aa37.86■■■■□ 3.65
RGPD6-211ENST00000490990 SUPT5HO00267 1087 aaKnown RBP37.79■■■■□ 3.64
RGPD6-211ENST00000490990 TOPBP1Q92547 1522 aa37.62■■■■□ 3.61
RGPD6-211ENST00000490990 ABCC8Q09428 1581 aa37.59■■■■□ 3.61
RGPD6-211ENST00000490990 DNMBPQ6XZF7 1577 aa37.55■■■■□ 3.6
RGPD6-211ENST00000490990 IFT140Q96RY7 1462 aa37.45■■■■□ 3.59
RGPD6-211ENST00000490990 ZNF608Q9ULD9 1512 aaPredicted RBP37.32■■■■□ 3.57
RGPD6-211ENST00000490990 POLA1P09884 1462 aaPredicted RBP37.28■■■■□ 3.56
RGPD6-211ENST00000490990 TARBP1Q13395 1621 aaKnown RBP37.25■■■■□ 3.55
RGPD6-211ENST00000490990 CUX1P39880 1505 aa37.22■■■■□ 3.55
RGPD6-211ENST00000490990 EIF4G3O43432 1585 aaKnown RBP37.17■■■■□ 3.54
RGPD6-211ENST00000490990 FGD5Q6ZNL6 1462 aa37.13■■■■□ 3.54
RGPD6-211ENST00000490990 RAD54L2Q9Y4B4 1467 aa37.11■■■■□ 3.53
RGPD6-211ENST00000490990 SOGA1O94964 1423 aa37.1■■■■□ 3.53
RGPD6-211ENST00000490990 AQRO60306 1485 aaKnown RBP eCLIP37.06■■■■□ 3.52
RGPD6-211ENST00000490990 OSCARQ8IYS5 282 aa37■■■■□ 3.51
RGPD6-211ENST00000490990 WDR97A6NE52 1622 aa36.94■■■■□ 3.5
RGPD6-211ENST00000490990 TDRD9Q8NDG6 1382 aaKnown RBP36.92■■■■□ 3.5
RGPD6-211ENST00000490990 WRNQ14191 1432 aaPredicted RBP eCLIP36.85■■■■□ 3.49
RGPD6-211ENST00000490990 BIVM-ERCC5R4GMW8 1640 aa36.84■■■■□ 3.49
RGPD6-211ENST00000490990 TOP2BQ02880 1626 aa36.83■■■■□ 3.49
RGPD6-211ENST00000490990 SYNJ1O43426 1573 aa36.8■■■■□ 3.48
RGPD6-211ENST00000490990 CHD1O14646 1710 aa36.78■■■■□ 3.48
RGPD6-211ENST00000490990 ABCA10Q8WWZ4 1543 aa36.78■■■■□ 3.48
RGPD6-211ENST00000490990 GRIN2BQ13224 1484 aa36.71■■■■□ 3.47
RGPD6-211ENST00000490990 SNAPC4Q5SXM2 1469 aa36.71■■■■□ 3.47
RGPD6-211ENST00000490990 ABCA5Q8WWZ7 1642 aa36.67■■■■□ 3.46
RGPD6-211ENST00000490990 GAPVD1Q14C86 1478 aa36.67■■■■□ 3.46
RGPD6-211ENST00000490990 MAGI1Q96QZ7 1491 aaPredicted RBP36.66■■■■□ 3.46
RGPD6-211ENST00000490990 PBRM1Q86U86 1689 aa36.65■■■■□ 3.46
RGPD6-211ENST00000490990 FBLN2P98095 1184 aa36.62■■■■□ 3.45
RGPD6-211ENST00000490990 SYNJ2O15056 1496 aa36.52■■■■□ 3.44
RGPD6-211ENST00000490990 RIMBP3CA6NJZ7 1639 aa36.49■■■■□ 3.43
RGPD6-211ENST00000490990 RIMBP3BA6NNM3 1639 aa36.49■■■■□ 3.43
RGPD6-211ENST00000490990 RIMBP3Q9UFD9 1639 aa36.49■■■■□ 3.43
RGPD6-211ENST00000490990 CHMP7Q8WUX9 453 aaPredicted RBP36.49■■■■□ 3.43
RGPD6-211ENST00000490990 TRIM41Q8WV44 630 aa36.44■■■■□ 3.42
RGPD6-211ENST00000490990 ARHGEF11O15085 1522 aa36.44■■■■□ 3.42
RGPD6-211ENST00000490990 CLASP1Q7Z460 1538 aa36.37■■■■□ 3.41
RGPD6-211ENST00000490990 ADAMTS12P58397 1594 aa36.34■■■■□ 3.41
RGPD6-211ENST00000490990 ERICH3Q5RHP9 1530 aa36.33■■■■□ 3.41
RGPD6-211ENST00000490990 GRIN2AQ12879 1464 aa36.24■■■■□ 3.39
RGPD6-211ENST00000490990 FHAD1B1AJZ9 1412 aa36.24■■■■□ 3.39
RGPD6-211ENST00000490990 ARAP1Q96P48 1450 aa36.13■■■■□ 3.37
RGPD6-211ENST00000490990 NUP160Q12769 1436 aa36.11■■■■□ 3.37
RGPD6-211ENST00000490990 CEP170Q5SW79 1584 aa36.1■■■■□ 3.37
RGPD6-211ENST00000490990 KIF27Q86VH2 1401 aa36.09■■■■□ 3.37
RGPD6-211ENST00000490990 CYB5RLQ6IPT4 315 aa36.07■■■■□ 3.36
RGPD6-211ENST00000490990 IGF1RP08069 1367 aa36■■■■□ 3.35
RGPD6-211ENST00000490990 CUL7Q14999 1698 aa35.94■■■■□ 3.34
RGPD6-211ENST00000490990 SHROOM2Q13796 1616 aa35.9■■■■□ 3.34
RGPD6-211ENST00000490990 ERCC6L2Q5T890 1561 aa35.84■■■■□ 3.33
RGPD6-211ENST00000490990 RUSC2Q8N2Y8 1516 aa35.81■■■■□ 3.32
RGPD6-211ENST00000490990 CARMIL1Q5VZK9 1371 aa35.76■■■■□ 3.32
Retrieved 100 of 20,778 RNA–protein pairs in 58.3 ms