RNA–Protein interactions for RNA: ENST00000490889.2

SRGAP3-209, Transcript of SLIT-ROBO Rho GTPase activating protein 3, humanhuman

TSL 4

Gene SRGAP3, Length 622 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SRGAP3-209ENST00000490889 NISCHQ9Y2I1 1504 aa41.86■■■■■ 4.29
SRGAP3-209ENST00000490889 ABCC9O60706 1549 aa37.57■■■■□ 3.61
SRGAP3-209ENST00000490889 CCDC180Q9P1Z9 1646 aa37.54■■■■□ 3.6
SRGAP3-209ENST00000490889 RB1CC1Q8TDY2 1594 aa35.72■■■■□ 3.31
SRGAP3-209ENST00000490889 NACADO15069 1562 aa35.47■■■■□ 3.27
SRGAP3-209ENST00000490889 DCAF8L2P0C7V8 631 aa35.27■■■■□ 3.24
SRGAP3-209ENST00000490889 DNAJC5BQ9UF47 199 aa35.27■■■■□ 3.24
SRGAP3-209ENST00000490889 UNC13AQ9UPW8 1703 aa34.99■■■■□ 3.19
SRGAP3-209ENST00000490889 MYO15BQ96JP2 1530 aa34.99■■■■□ 3.19
SRGAP3-209ENST00000490889 PABPN1Q86U42 306 aaKnown RBP eCLIP34.97■■■■□ 3.19
SRGAP3-209ENST00000490889 BICRAQ9NZM4 1560 aa34.76■■■■□ 3.16
SRGAP3-209ENST00000490889 ZCCHC6Q5VYS8 1495 aaKnown RBP34.71■■■■□ 3.15
SRGAP3-209ENST00000490889 DCAF1Q9Y4B6 1507 aa34.55■■■■□ 3.12
SRGAP3-209ENST00000490889 SCRIBQ14160 1630 aa34.25■■■■□ 3.07
SRGAP3-209ENST00000490889 SHROOM4Q9ULL8 1493 aa34.19■■■■□ 3.06
SRGAP3-209ENST00000490889 CC2D2AQ9P2K1 1620 aa33.94■■■■□ 3.02
SRGAP3-209ENST00000490889 EIF4G1Q04637 1599 aaKnown RBP33.87■■■■□ 3.01
SRGAP3-209ENST00000490889 CECR2Q9BXF3 1484 aa33.82■■■■□ 3.01
SRGAP3-209ENST00000490889 NCAPD3P42695 1498 aa32.77■■■□□ 2.84
SRGAP3-209ENST00000490889 ATAD2BQ9ULI0 1458 aa32.69■■■□□ 2.82
SRGAP3-209ENST00000490889 SMARCA4P51532 1647 aa32.66■■■□□ 2.82
SRGAP3-209ENST00000490889 SMARCA2P51531 1590 aa32.56■■■□□ 2.8
SRGAP3-209ENST00000490889 HMGXB3Q12766 1538 aa32.53■■■□□ 2.8
SRGAP3-209ENST00000490889 BAZ1AQ9NRL2 1556 aaPredicted RBP32.47■■■□□ 2.79
SRGAP3-209ENST00000490889 ERCC6Q03468 1493 aa32.38■■■□□ 2.77
SRGAP3-209ENST00000490889 BAZ1BQ9UIG0 1483 aaKnown RBP32.35■■■□□ 2.77
SRGAP3-209ENST00000490889 PEG3Q9GZU2 1588 aa32.34■■■□□ 2.77
SRGAP3-209ENST00000490889 CUX2O14529 1486 aa32.33■■■□□ 2.77
SRGAP3-209ENST00000490889 DNAJC5Q9H3Z4 198 aa32.31■■■□□ 2.76
SRGAP3-209ENST00000490889 NESP48681 1621 aa32.3■■■□□ 2.76
SRGAP3-209ENST00000490889 MROH2BQ7Z745 1585 aa32.29■■■□□ 2.76
SRGAP3-209ENST00000490889 LAMC3Q9Y6N6 1575 aa32.02■■■□□ 2.72
SRGAP3-209ENST00000490889 THOC2Q8NI27 1593 aaKnown RBP31.98■■■□□ 2.71
SRGAP3-209ENST00000490889 WIZO95785 1651 aa31.9■■■□□ 2.7
SRGAP3-209ENST00000490889 KIF21AQ7Z4S6 1674 aa31.88■■■□□ 2.69
SRGAP3-209ENST00000490889 PDS5BQ9NTI5 1447 aa31.8■■■□□ 2.68
SRGAP3-209ENST00000490889 CADPSQ9ULU8 1353 aa31.76■■■□□ 2.67
SRGAP3-209ENST00000490889 RSF1Q96T23 1441 aaPredicted RBP31.59■■■□□ 2.65
SRGAP3-209ENST00000490889 MRC2Q9UBG0 1479 aa31.57■■■□□ 2.64
SRGAP3-209ENST00000490889 WDR62O43379 1518 aa31.51■■■□□ 2.63
SRGAP3-209ENST00000490889 TOP2AP11388 1531 aaKnown RBP31.47■■■□□ 2.63
SRGAP3-209ENST00000490889 CEP164Q9UPV0 1460 aa31.44■■■□□ 2.62
SRGAP3-209ENST00000490889 CFTRP13569 1480 aa31.42■■■□□ 2.62
SRGAP3-209ENST00000490889 FANCD2Q9BXW9 1451 aa31.42■■■□□ 2.62
SRGAP3-209ENST00000490889 URB2Q14146 1524 aaKnown RBP31.19■■■□□ 2.58
SRGAP3-209ENST00000490889 CCDC88BA6NC98 1476 aa31.12■■■□□ 2.57
SRGAP3-209ENST00000490889 PRDM2Q13029 1718 aa31.11■■■□□ 2.57
SRGAP3-209ENST00000490889 TRIM41Q8WV44 630 aa30.9■■■□□ 2.54
SRGAP3-209ENST00000490889 TOPBP1Q92547 1522 aa30.84■■■□□ 2.53
SRGAP3-209ENST00000490889 OSCARQ8IYS5 282 aa30.82■■■□□ 2.52
SRGAP3-209ENST00000490889 ZNF608Q9ULD9 1512 aaPredicted RBP30.82■■■□□ 2.52
SRGAP3-209ENST00000490889 IFT140Q96RY7 1462 aa30.8■■■□□ 2.52
SRGAP3-209ENST00000490889 DNMBPQ6XZF7 1577 aa30.71■■■□□ 2.51
SRGAP3-209ENST00000490889 ABCC8Q09428 1581 aa30.7■■■□□ 2.5
SRGAP3-209ENST00000490889 EIF4G3O43432 1585 aaKnown RBP30.64■■■□□ 2.5
SRGAP3-209ENST00000490889 TARBP1Q13395 1621 aaKnown RBP30.58■■■□□ 2.49
SRGAP3-209ENST00000490889 POLA1P09884 1462 aaPredicted RBP30.53■■■□□ 2.48
SRGAP3-209ENST00000490889 RIMBP3CA6NJZ7 1639 aa30.51■■■□□ 2.47
SRGAP3-209ENST00000490889 RIMBP3BA6NNM3 1639 aa30.51■■■□□ 2.47
SRGAP3-209ENST00000490889 RIMBP3Q9UFD9 1639 aa30.51■■■□□ 2.47
SRGAP3-209ENST00000490889 AQRO60306 1485 aaKnown RBP eCLIP30.5■■■□□ 2.47
SRGAP3-209ENST00000490889 RAD54L2Q9Y4B4 1467 aa30.44■■■□□ 2.46
SRGAP3-209ENST00000490889 CHD1O14646 1710 aa30.41■■■□□ 2.46
SRGAP3-209ENST00000490889 ARHGEF11O15085 1522 aa30.41■■■□□ 2.46
SRGAP3-209ENST00000490889 SOGA1O94964 1423 aa30.35■■■□□ 2.45
SRGAP3-209ENST00000490889 FGD5Q6ZNL6 1462 aa30.34■■■□□ 2.45
SRGAP3-209ENST00000490889 CUX1P39880 1505 aa30.33■■■□□ 2.45
SRGAP3-209ENST00000490889 TDRD9Q8NDG6 1382 aaKnown RBP30.31■■■□□ 2.44
SRGAP3-209ENST00000490889 FBLN2P98095 1184 aa30.24■■■□□ 2.43
SRGAP3-209ENST00000490889 WDR97A6NE52 1622 aa30.21■■■□□ 2.43
SRGAP3-209ENST00000490889 SNAPC4Q5SXM2 1469 aa30.2■■■□□ 2.43
SRGAP3-209ENST00000490889 SUPT5HO00267 1087 aaKnown RBP30.16■■■□□ 2.42
SRGAP3-209ENST00000490889 CYB5RLQ6IPT4 315 aa30.13■■■□□ 2.41
SRGAP3-209ENST00000490889 ARAP1Q96P48 1450 aa30.12■■■□□ 2.41
SRGAP3-209ENST00000490889 GRIN2BQ13224 1484 aa30.09■■■□□ 2.41
SRGAP3-209ENST00000490889 MAGI1Q96QZ7 1491 aaPredicted RBP30.08■■■□□ 2.41
SRGAP3-209ENST00000490889 CLASP1Q7Z460 1538 aa30.06■■■□□ 2.4
SRGAP3-209ENST00000490889 PBRM1Q86U86 1689 aa30.01■■■□□ 2.4
SRGAP3-209ENST00000490889 CHMP7Q8WUX9 453 aaPredicted RBP30.01■■■□□ 2.39
SRGAP3-209ENST00000490889 SYNJ2O15056 1496 aa29.99■■■□□ 2.39
SRGAP3-209ENST00000490889 GAPVD1Q14C86 1478 aa29.99■■■□□ 2.39
SRGAP3-209ENST00000490889 SYNJ1O43426 1573 aa29.99■■■□□ 2.39
SRGAP3-209ENST00000490889 ABCA10Q8WWZ4 1543 aa29.97■■■□□ 2.39
SRGAP3-209ENST00000490889 ABCA5Q8WWZ7 1642 aa29.96■■■□□ 2.39
SRGAP3-209ENST00000490889 BIVM-ERCC5R4GMW8 1640 aa29.84■■■□□ 2.37
SRGAP3-209ENST00000490889 TOP2BQ02880 1626 aa29.82■■■□□ 2.36
SRGAP3-209ENST00000490889 WRNQ14191 1432 aaPredicted RBP eCLIP29.81■■■□□ 2.36
SRGAP3-209ENST00000490889 TRHP20396 242 aaPredicted RBP29.77■■■□□ 2.36
SRGAP3-209ENST00000490889 ADAMTS12P58397 1594 aa29.73■■■□□ 2.35
SRGAP3-209ENST00000490889 GRIN2AQ12879 1464 aa29.73■■■□□ 2.35
SRGAP3-209ENST00000490889 CEP170Q5SW79 1584 aa29.65■■■□□ 2.34
SRGAP3-209ENST00000490889 ERCC6L2Q5T890 1561 aa29.64■■■□□ 2.33
SRGAP3-209ENST00000490889 NUP160Q12769 1436 aa29.63■■■□□ 2.33
SRGAP3-209ENST00000490889 FHAD1B1AJZ9 1412 aa29.61■■■□□ 2.33
SRGAP3-209ENST00000490889 ERICH3Q5RHP9 1530 aa29.59■■■□□ 2.33
SRGAP3-209ENST00000490889 SHROOM2Q13796 1616 aa29.51■■■□□ 2.31
SRGAP3-209ENST00000490889 RUSC2Q8N2Y8 1516 aa29.32■■■□□ 2.28
SRGAP3-209ENST00000490889 PRG4Q92954 1404 aaPredicted RBP29.32■■■□□ 2.28
SRGAP3-209ENST00000490889 JPH4Q96JJ6 628 aa29.28■■■□□ 2.28
SRGAP3-209ENST00000490889 IGF1RP08069 1367 aa29.22■■■□□ 2.27
Retrieved 100 of 20,778 RNA–protein pairs in 119 ms