RNA–Protein interactions for RNA: ENST00000490839.1

AGAP3-222, Transcript of ArfGAP with GTPase domain, ankyrin repeat and PH domain 3, human

TSL 4

Gene AGAP3, Length 592 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
AGAP3-222	ENST00000490839	NISCH	Q9Y2I1	1504 aa		38.78	■■■■□ 3.8
AGAP3-222	ENST00000490839	ABCC9	O60706	1549 aa		35.16	■■■■□ 3.22
AGAP3-222	ENST00000490839	CCDC180	Q9P1Z9	1646 aa		34.98	■■■■□ 3.19
AGAP3-222	ENST00000490839	RB1CC1	Q8TDY2	1594 aa		33.41	■■■□□ 2.94
AGAP3-222	ENST00000490839	DNAJC5B	Q9UF47	199 aa		33.18	■■■□□ 2.9
AGAP3-222	ENST00000490839	NACAD	O15069	1562 aa		33.12	■■■□□ 2.89
AGAP3-222	ENST00000490839	DCAF8L2	P0C7V8	631 aa		32.73	■■■□□ 2.83
AGAP3-222	ENST00000490839	PABPN1	Q86U42	306 aa	Known RBP eCLIP	32.64	■■■□□ 2.82
AGAP3-222	ENST00000490839	UNC13A	Q9UPW8	1703 aa		32.63	■■■□□ 2.81
AGAP3-222	ENST00000490839	MYO15B	Q96JP2	1530 aa		32.6	■■■□□ 2.81
AGAP3-222	ENST00000490839	BICRA	Q9NZM4	1560 aa		32.42	■■■□□ 2.78
AGAP3-222	ENST00000490839	ZCCHC6	Q5VYS8	1495 aa	Known RBP	32.1	■■■□□ 2.73
AGAP3-222	ENST00000490839	DCAF1	Q9Y4B6	1507 aa		32.06	■■■□□ 2.72
AGAP3-222	ENST00000490839	SHROOM4	Q9ULL8	1493 aa		32.05	■■■□□ 2.72
AGAP3-222	ENST00000490839	SCRIB	Q14160	1630 aa		31.79	■■■□□ 2.68
AGAP3-222	ENST00000490839	CC2D2A	Q9P2K1	1620 aa		31.78	■■■□□ 2.68
AGAP3-222	ENST00000490839	CECR2	Q9BXF3	1484 aa		31.73	■■■□□ 2.67
AGAP3-222	ENST00000490839	EIF4G1	Q04637	1599 aa	Known RBP	31.66	■■■□□ 2.66
AGAP3-222	ENST00000490839	DNAJC5	Q9H3Z4	198 aa		30.73	■■■□□ 2.51
AGAP3-222	ENST00000490839	NCAPD3	P42695	1498 aa		30.56	■■■□□ 2.48
AGAP3-222	ENST00000490839	CUX2	O14529	1486 aa		30.5	■■■□□ 2.47
AGAP3-222	ENST00000490839	ERCC6	Q03468	1493 aa		30.41	■■■□□ 2.46
AGAP3-222	ENST00000490839	ATAD2B	Q9ULI0	1458 aa		30.41	■■■□□ 2.46
AGAP3-222	ENST00000490839	SMARCA2	P51531	1590 aa		30.34	■■■□□ 2.45
AGAP3-222	ENST00000490839	HMGXB3	Q12766	1538 aa		30.34	■■■□□ 2.45
AGAP3-222	ENST00000490839	SMARCA4	P51532	1647 aa		30.33	■■■□□ 2.45
AGAP3-222	ENST00000490839	BAZ1A	Q9NRL2	1556 aa	Predicted RBP	30.15	■■■□□ 2.42
AGAP3-222	ENST00000490839	NES	P48681	1621 aa		30.12	■■■□□ 2.41
AGAP3-222	ENST00000490839	BAZ1B	Q9UIG0	1483 aa	Known RBP	30.12	■■■□□ 2.41
AGAP3-222	ENST00000490839	PEG3	Q9GZU2	1588 aa		30.07	■■■□□ 2.4
AGAP3-222	ENST00000490839	THOC2	Q8NI27	1593 aa	Known RBP	29.94	■■■□□ 2.38
AGAP3-222	ENST00000490839	LAMC3	Q9Y6N6	1575 aa		29.93	■■■□□ 2.38
AGAP3-222	ENST00000490839	MROH2B	Q7Z745	1585 aa		29.86	■■■□□ 2.37
AGAP3-222	ENST00000490839	KIF21A	Q7Z4S6	1674 aa		29.76	■■■□□ 2.36
AGAP3-222	ENST00000490839	PDS5B	Q9NTI5	1447 aa		29.75	■■■□□ 2.35
AGAP3-222	ENST00000490839	CADPS	Q9ULU8	1353 aa		29.6	■■■□□ 2.33
AGAP3-222	ENST00000490839	MRC2	Q9UBG0	1479 aa		29.52	■■■□□ 2.32
AGAP3-222	ENST00000490839	WIZ	O95785	1651 aa		29.48	■■■□□ 2.31
AGAP3-222	ENST00000490839	WDR62	O43379	1518 aa		29.47	■■■□□ 2.31
AGAP3-222	ENST00000490839	CEP164	Q9UPV0	1460 aa		29.34	■■■□□ 2.29
AGAP3-222	ENST00000490839	FANCD2	Q9BXW9	1451 aa		29.27	■■■□□ 2.28
AGAP3-222	ENST00000490839	TRIM41	Q8WV44	630 aa		29.22	■■■□□ 2.27
AGAP3-222	ENST00000490839	CFTR	P13569	1480 aa		29.22	■■■□□ 2.27
AGAP3-222	ENST00000490839	TOP2A	P11388	1531 aa	Known RBP	29.14	■■■□□ 2.25
AGAP3-222	ENST00000490839	RSF1	Q96T23	1441 aa	Predicted RBP	29.13	■■■□□ 2.25
AGAP3-222	ENST00000490839	URB2	Q14146	1524 aa	Known RBP	29.04	■■■□□ 2.24
AGAP3-222	ENST00000490839	OSCAR	Q8IYS5	282 aa		28.98	■■■□□ 2.23
AGAP3-222	ENST00000490839	PRDM2	Q13029	1718 aa		28.94	■■■□□ 2.22
AGAP3-222	ENST00000490839	IFT140	Q96RY7	1462 aa		28.78	■■■□□ 2.2
AGAP3-222	ENST00000490839	CCDC88B	A6NC98	1476 aa		28.76	■■■□□ 2.19
AGAP3-222	ENST00000490839	ZNF608	Q9ULD9	1512 aa	Predicted RBP	28.71	■■■□□ 2.19
AGAP3-222	ENST00000490839	TOPBP1	Q92547	1522 aa		28.69	■■■□□ 2.18
AGAP3-222	ENST00000490839	RIMBP3C	A6NJZ7	1639 aa		28.67	■■■□□ 2.18
AGAP3-222	ENST00000490839	RIMBP3B	A6NNM3	1639 aa		28.67	■■■□□ 2.18
AGAP3-222	ENST00000490839	RIMBP3	Q9UFD9	1639 aa		28.67	■■■□□ 2.18
AGAP3-222	ENST00000490839	ABCC8	Q09428	1581 aa		28.63	■■■□□ 2.17
AGAP3-222	ENST00000490839	EIF4G3	O43432	1585 aa	Known RBP	28.58	■■■□□ 2.17
AGAP3-222	ENST00000490839	DNMBP	Q6XZF7	1577 aa		28.58	■■■□□ 2.17
AGAP3-222	ENST00000490839	ARHGEF11	O15085	1522 aa		28.56	■■■□□ 2.16
AGAP3-222	ENST00000490839	TARBP1	Q13395	1621 aa	Known RBP	28.46	■■■□□ 2.15
AGAP3-222	ENST00000490839	CHD1	O14646	1710 aa		28.41	■■■□□ 2.14
AGAP3-222	ENST00000490839	AQR	O60306	1485 aa	Known RBP eCLIP	28.4	■■■□□ 2.14	4e-6	■□□□□ 10.8
AGAP3-222	ENST00000490839	POLA1	P09884	1462 aa	Predicted RBP	28.37	■■■□□ 2.13
AGAP3-222	ENST00000490839	CYB5RL	Q6IPT4	315 aa		28.29	■■■□□ 2.12
AGAP3-222	ENST00000490839	ARAP1	Q96P48	1450 aa		28.26	■■■□□ 2.11
AGAP3-222	ENST00000490839	RAD54L2	Q9Y4B4	1467 aa		28.24	■■■□□ 2.11
AGAP3-222	ENST00000490839	FBLN2	P98095	1184 aa		28.24	■■■□□ 2.11
AGAP3-222	ENST00000490839	WDR97	A6NE52	1622 aa		28.21	■■■□□ 2.11
AGAP3-222	ENST00000490839	SOGA1	O94964	1423 aa		28.21	■■■□□ 2.11
AGAP3-222	ENST00000490839	TDRD9	Q8NDG6	1382 aa	Known RBP	28.18	■■■□□ 2.1
AGAP3-222	ENST00000490839	FGD5	Q6ZNL6	1462 aa		28.15	■■■□□ 2.1
AGAP3-222	ENST00000490839	SNAPC4	Q5SXM2	1469 aa		28.14	■■■□□ 2.09
AGAP3-222	ENST00000490839	CLASP1	Q7Z460	1538 aa		28.1	■■■□□ 2.09
AGAP3-222	ENST00000490839	MAGI1	Q96QZ7	1491 aa	Predicted RBP	28.08	■■■□□ 2.09
AGAP3-222	ENST00000490839	CUX1	P39880	1505 aa		28.08	■■■□□ 2.08
AGAP3-222	ENST00000490839	TRH	P20396	242 aa	Predicted RBP	28.07	■■■□□ 2.08
AGAP3-222	ENST00000490839	SYNJ1	O43426	1573 aa		28.06	■■■□□ 2.08
AGAP3-222	ENST00000490839	GRIN2B	Q13224	1484 aa		28.03	■■■□□ 2.08
AGAP3-222	ENST00000490839	CHMP7	Q8WUX9	453 aa	Predicted RBP	28.01	■■■□□ 2.07
AGAP3-222	ENST00000490839	SYNJ2	O15056	1496 aa		27.99	■■■□□ 2.07
AGAP3-222	ENST00000490839	PBRM1	Q86U86	1689 aa		27.91	■■■□□ 2.06
AGAP3-222	ENST00000490839	GAPVD1	Q14C86	1478 aa		27.88	■■■□□ 2.05
AGAP3-222	ENST00000490839	ABCA10	Q8WWZ4	1543 aa		27.83	■■■□□ 2.05
AGAP3-222	ENST00000490839	ABCA5	Q8WWZ7	1642 aa		27.83	■■■□□ 2.05
AGAP3-222	ENST00000490839	GRIN2A	Q12879	1464 aa		27.68	■■■□□ 2.02
AGAP3-222	ENST00000490839	WRN	Q14191	1432 aa	Predicted RBP eCLIP	27.66	■■■□□ 2.02
AGAP3-222	ENST00000490839	ADAMTS12	P58397	1594 aa		27.65	■■■□□ 2.02
AGAP3-222	ENST00000490839	NUP160	Q12769	1436 aa		27.6	■■■□□ 2.01
AGAP3-222	ENST00000490839	CEP170	Q5SW79	1584 aa		27.59	■■■□□ 2.01
AGAP3-222	ENST00000490839	ERCC6L2	Q5T890	1561 aa		27.59	■■■□□ 2.01
AGAP3-222	ENST00000490839	BIVM-ERCC5	R4GMW8	1640 aa		27.59	■■■□□ 2.01
AGAP3-222	ENST00000490839	TOP2B	Q02880	1626 aa		27.57	■■■□□ 2
AGAP3-222	ENST00000490839	SUPT5H	O00267	1087 aa	Known RBP	27.55	■■■□□ 2
AGAP3-222	ENST00000490839	SHROOM2	Q13796	1616 aa		27.53	■■■□□ 2
AGAP3-222	ENST00000490839	FHAD1	B1AJZ9	1412 aa		27.53	■■■□□ 2
AGAP3-222	ENST00000490839	ERICH3	Q5RHP9	1530 aa		27.49	■■□□□ 1.99
AGAP3-222	ENST00000490839	AEBP2	Q6ZN18	517 aa	Predicted RBP	27.47	■■□□□ 1.99
AGAP3-222	ENST00000490839	PRG4	Q92954	1404 aa	Predicted RBP	27.33	■■□□□ 1.96
AGAP3-222	ENST00000490839	KIF13A	Q9H1H9	1805 aa		27.29	■■□□□ 1.96
AGAP3-222	ENST00000490839	RUSC2	Q8N2Y8	1516 aa		27.26	■■□□□ 1.96

Retrieved 100 of 20,778 RNA–protein pairs in 58.2 ms