RNA–Protein interactions for RNA: ENST00000490831.1

COL27A1-206, Transcript of collagen type XXVII alpha 1 chain, humanhuman

TSL 3

Gene COL27A1, Length 666 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL27A1-206ENST00000490831 NISCHQ9Y2I1 1504 aa37.48■■■■□ 3.59
COL27A1-206ENST00000490831 CCDC180Q9P1Z9 1646 aa33.42■■■□□ 2.94
COL27A1-206ENST00000490831 ABCC9O60706 1549 aa32.83■■■□□ 2.85
COL27A1-206ENST00000490831 RB1CC1Q8TDY2 1594 aa31.54■■■□□ 2.64
COL27A1-206ENST00000490831 NACADO15069 1562 aa31.47■■■□□ 2.63
COL27A1-206ENST00000490831 MYO15BQ96JP2 1530 aa31.29■■■□□ 2.6
COL27A1-206ENST00000490831 DCAF8L2P0C7V8 631 aa31.24■■■□□ 2.59
COL27A1-206ENST00000490831 ZCCHC6Q5VYS8 1495 aaKnown RBP31.18■■■□□ 2.58
COL27A1-206ENST00000490831 DCAF1Q9Y4B6 1507 aa31.06■■■□□ 2.56
COL27A1-206ENST00000490831 UNC13AQ9UPW8 1703 aa30.8■■■□□ 2.52
COL27A1-206ENST00000490831 PABPN1Q86U42 306 aaKnown RBP eCLIP30.63■■■□□ 2.494e-16■■■■■ 47.5
COL27A1-206ENST00000490831 BICRAQ9NZM4 1560 aa30.62■■■□□ 2.49
COL27A1-206ENST00000490831 SCRIBQ14160 1630 aa30.4■■■□□ 2.46
COL27A1-206ENST00000490831 DNAJC5BQ9UF47 199 aa30.38■■■□□ 2.45
COL27A1-206ENST00000490831 SHROOM4Q9ULL8 1493 aa30.33■■■□□ 2.45
COL27A1-206ENST00000490831 EIF4G1Q04637 1599 aaKnown RBP29.8■■■□□ 2.36
COL27A1-206ENST00000490831 CC2D2AQ9P2K1 1620 aa29.72■■■□□ 2.35
COL27A1-206ENST00000490831 CECR2Q9BXF3 1484 aa29.55■■■□□ 2.32
COL27A1-206ENST00000490831 SMARCA4P51532 1647 aa29.11■■■□□ 2.25
COL27A1-206ENST00000490831 NCAPD3P42695 1498 aa29.07■■■□□ 2.24
COL27A1-206ENST00000490831 BAZ1AQ9NRL2 1556 aaPredicted RBP29.05■■■□□ 2.24
COL27A1-206ENST00000490831 ATAD2BQ9ULI0 1458 aa29.03■■■□□ 2.24
COL27A1-206ENST00000490831 SMARCA2P51531 1590 aa28.97■■■□□ 2.23
COL27A1-206ENST00000490831 HMGXB3Q12766 1538 aa28.89■■■□□ 2.22
COL27A1-206ENST00000490831 PEG3Q9GZU2 1588 aa28.88■■■□□ 2.21
COL27A1-206ENST00000490831 MROH2BQ7Z745 1585 aa28.86■■■□□ 2.21
COL27A1-206ENST00000490831 BAZ1BQ9UIG0 1483 aaKnown RBP28.73■■■□□ 2.19
COL27A1-206ENST00000490831 WIZO95785 1651 aa28.51■■■□□ 2.15
COL27A1-206ENST00000490831 RSF1Q96T23 1441 aaPredicted RBP28.47■■■□□ 2.15
COL27A1-206ENST00000490831 NESP48681 1621 aa28.36■■■□□ 2.13
COL27A1-206ENST00000490831 ERCC6Q03468 1493 aa28.31■■■□□ 2.12
COL27A1-206ENST00000490831 LAMC3Q9Y6N6 1575 aa28.3■■■□□ 2.12
COL27A1-206ENST00000490831 TOP2AP11388 1531 aaKnown RBP28.23■■■□□ 2.11
COL27A1-206ENST00000490831 CADPSQ9ULU8 1353 aa28.18■■■□□ 2.1
COL27A1-206ENST00000490831 CUX2O14529 1486 aa28.16■■■□□ 2.1
COL27A1-206ENST00000490831 PDS5BQ9NTI5 1447 aa28.11■■■□□ 2.09
COL27A1-206ENST00000490831 THOC2Q8NI27 1593 aaKnown RBP28.02■■■□□ 2.08
COL27A1-206ENST00000490831 KIF21AQ7Z4S6 1674 aa28.01■■■□□ 2.07
COL27A1-206ENST00000490831 CFTRP13569 1480 aa27.99■■■□□ 2.07
COL27A1-206ENST00000490831 CCDC88BA6NC98 1476 aa27.89■■■□□ 2.06
COL27A1-206ENST00000490831 FANCD2Q9BXW9 1451 aa27.83■■■□□ 2.05
COL27A1-206ENST00000490831 MRC2Q9UBG0 1479 aa27.83■■■□□ 2.05
COL27A1-206ENST00000490831 CEP164Q9UPV0 1460 aa27.81■■■□□ 2.04
COL27A1-206ENST00000490831 WDR62O43379 1518 aa27.77■■■□□ 2.04
COL27A1-206ENST00000490831 PRDM2Q13029 1718 aa27.71■■■□□ 2.03
COL27A1-206ENST00000490831 URB2Q14146 1524 aaKnown RBP27.58■■■□□ 2.01
COL27A1-206ENST00000490831 DNAJC5Q9H3Z4 198 aa27.54■■■□□ 2
COL27A1-206ENST00000490831 SUPT5HO00267 1087 aaKnown RBP27.46■■□□□ 1.99
COL27A1-206ENST00000490831 ABCC8Q09428 1581 aa27.38■■□□□ 1.97
COL27A1-206ENST00000490831 TOPBP1Q92547 1522 aa27.37■■□□□ 1.97
COL27A1-206ENST00000490831 DNMBPQ6XZF7 1577 aa27.32■■□□□ 1.96
COL27A1-206ENST00000490831 IFT140Q96RY7 1462 aa27.26■■□□□ 1.95
COL27A1-206ENST00000490831 ZNF608Q9ULD9 1512 aaPredicted RBP27.14■■□□□ 1.94
COL27A1-206ENST00000490831 POLA1P09884 1462 aaPredicted RBP27.13■■□□□ 1.93
COL27A1-206ENST00000490831 TARBP1Q13395 1621 aaKnown RBP27.11■■□□□ 1.93
COL27A1-206ENST00000490831 CUX1P39880 1505 aa27.09■■□□□ 1.93
COL27A1-206ENST00000490831 EIF4G3O43432 1585 aaKnown RBP27.01■■□□□ 1.92
COL27A1-206ENST00000490831 FGD5Q6ZNL6 1462 aa27.01■■□□□ 1.91
COL27A1-206ENST00000490831 SOGA1O94964 1423 aa26.99■■□□□ 1.91
COL27A1-206ENST00000490831 RAD54L2Q9Y4B4 1467 aa26.99■■□□□ 1.91
COL27A1-206ENST00000490831 AQRO60306 1485 aaKnown RBP eCLIP26.95■■□□□ 1.916e-12■■■■□ 25.4
COL27A1-206ENST00000490831 OSCARQ8IYS5 282 aa26.92■■□□□ 1.9
COL27A1-206ENST00000490831 WDR97A6NE52 1622 aa26.91■■□□□ 1.9
COL27A1-206ENST00000490831 TDRD9Q8NDG6 1382 aaKnown RBP26.85■■□□□ 1.89
COL27A1-206ENST00000490831 WRNQ14191 1432 aaPredicted RBP eCLIP26.82■■□□□ 1.88
COL27A1-206ENST00000490831 TOP2BQ02880 1626 aa26.8■■□□□ 1.88
COL27A1-206ENST00000490831 BIVM-ERCC5R4GMW8 1640 aa26.8■■□□□ 1.88
COL27A1-206ENST00000490831 ABCA10Q8WWZ4 1543 aa26.79■■□□□ 1.88
COL27A1-206ENST00000490831 SYNJ1O43426 1573 aa26.76■■□□□ 1.87
COL27A1-206ENST00000490831 GRIN2BQ13224 1484 aa26.73■■□□□ 1.87
COL27A1-206ENST00000490831 SNAPC4Q5SXM2 1469 aa26.69■■□□□ 1.86
COL27A1-206ENST00000490831 MAGI1Q96QZ7 1491 aaPredicted RBP26.69■■□□□ 1.86
COL27A1-206ENST00000490831 CHD1O14646 1710 aa26.69■■□□□ 1.86
COL27A1-206ENST00000490831 ABCA5Q8WWZ7 1642 aa26.68■■□□□ 1.86
COL27A1-206ENST00000490831 GAPVD1Q14C86 1478 aa26.68■■□□□ 1.86
COL27A1-206ENST00000490831 PBRM1Q86U86 1689 aa26.61■■□□□ 1.85
COL27A1-206ENST00000490831 FBLN2P98095 1184 aa26.59■■□□□ 1.85
COL27A1-206ENST00000490831 SYNJ2O15056 1496 aa26.58■■□□□ 1.85
COL27A1-206ENST00000490831 CHMP7Q8WUX9 453 aaPredicted RBP26.54■■□□□ 1.84
COL27A1-206ENST00000490831 RIMBP3CA6NJZ7 1639 aa26.5■■□□□ 1.83
COL27A1-206ENST00000490831 RIMBP3BA6NNM3 1639 aa26.5■■□□□ 1.83
COL27A1-206ENST00000490831 RIMBP3Q9UFD9 1639 aa26.5■■□□□ 1.83
COL27A1-206ENST00000490831 ARHGEF11O15085 1522 aa26.49■■□□□ 1.83
COL27A1-206ENST00000490831 CLASP1Q7Z460 1538 aa26.46■■□□□ 1.83
COL27A1-206ENST00000490831 ERICH3Q5RHP9 1530 aa26.45■■□□□ 1.83
COL27A1-206ENST00000490831 TRIM41Q8WV44 630 aa26.43■■□□□ 1.82
COL27A1-206ENST00000490831 ADAMTS12P58397 1594 aa26.42■■□□□ 1.82
COL27A1-206ENST00000490831 FHAD1B1AJZ9 1412 aa26.39■■□□□ 1.81
COL27A1-206ENST00000490831 GRIN2AQ12879 1464 aa26.37■■□□□ 1.81
COL27A1-206ENST00000490831 NUP160Q12769 1436 aa26.31■■□□□ 1.8
COL27A1-206ENST00000490831 KIF27Q86VH2 1401 aa26.28■■□□□ 1.8
COL27A1-206ENST00000490831 ARAP1Q96P48 1450 aa26.27■■□□□ 1.8
COL27A1-206ENST00000490831 CEP170Q5SW79 1584 aa26.24■■□□□ 1.79
COL27A1-206ENST00000490831 IGF1RP08069 1367 aa26.23■■□□□ 1.79
COL27A1-206ENST00000490831 CYB5RLQ6IPT4 315 aa26.21■■□□□ 1.79
COL27A1-206ENST00000490831 CUL7Q14999 1698 aa26.15■■□□□ 1.78
COL27A1-206ENST00000490831 SHROOM2Q13796 1616 aa26.12■■□□□ 1.77
COL27A1-206ENST00000490831 RUSC2Q8N2Y8 1516 aa26.04■■□□□ 1.76
COL27A1-206ENST00000490831 CARMIL1Q5VZK9 1371 aa26.04■■□□□ 1.76
COL27A1-206ENST00000490831 ERCC6L2Q5T890 1561 aa26.03■■□□□ 1.76
Retrieved 100 of 20,778 RNA–protein pairs in 29.3 ms