RNA–Protein interactions for RNA: ENST00000490516.5

EXOSC3-207, Transcript of exosome component 3, humanhuman

TSL 2

Gene EXOSC3, Length 773 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
EXOSC3-207ENST00000490516 NISCHQ9Y2I1 1504 aa35.62■■■■□ 3.29
EXOSC3-207ENST00000490516 ABCC9O60706 1549 aa33.28■■■□□ 2.92
EXOSC3-207ENST00000490516 CCDC180Q9P1Z9 1646 aa32.37■■■□□ 2.77
EXOSC3-207ENST00000490516 DNAJC5BQ9UF47 199 aa32.04■■■□□ 2.72
EXOSC3-207ENST00000490516 RB1CC1Q8TDY2 1594 aa31.23■■■□□ 2.59
EXOSC3-207ENST00000490516 PABPN1Q86U42 306 aaKnown RBP eCLIP30.84■■■□□ 2.53
EXOSC3-207ENST00000490516 NACADO15069 1562 aa30.78■■■□□ 2.52
EXOSC3-207ENST00000490516 UNC13AQ9UPW8 1703 aa30.66■■■□□ 2.5
EXOSC3-207ENST00000490516 DCAF8L2P0C7V8 631 aa30.49■■■□□ 2.47
EXOSC3-207ENST00000490516 BICRAQ9NZM4 1560 aa30.41■■■□□ 2.46
EXOSC3-207ENST00000490516 CECR2Q9BXF3 1484 aa30.03■■■□□ 2.4
EXOSC3-207ENST00000490516 CC2D2AQ9P2K1 1620 aa30.02■■■□□ 2.4
EXOSC3-207ENST00000490516 DNAJC5Q9H3Z4 198 aa30.01■■■□□ 2.39
EXOSC3-207ENST00000490516 MYO15BQ96JP2 1530 aa30.01■■■□□ 2.39
EXOSC3-207ENST00000490516 SHROOM4Q9ULL8 1493 aa29.77■■■□□ 2.36
EXOSC3-207ENST00000490516 EIF4G1Q04637 1599 aaKnown RBP29.71■■■□□ 2.35
EXOSC3-207ENST00000490516 SCRIBQ14160 1630 aa29.49■■■□□ 2.31
EXOSC3-207ENST00000490516 ZCCHC6Q5VYS8 1495 aaKnown RBP29.33■■■□□ 2.29
EXOSC3-207ENST00000490516 DCAF1Q9Y4B6 1507 aa29.32■■■□□ 2.28
EXOSC3-207ENST00000490516 CUX2O14529 1486 aa28.97■■■□□ 2.23
EXOSC3-207ENST00000490516 ERCC6Q03468 1493 aa28.75■■■□□ 2.19
EXOSC3-207ENST00000490516 NCAPD3P42695 1498 aa28.42■■■□□ 2.14
EXOSC3-207ENST00000490516 TRIM41Q8WV44 630 aa28.37■■■□□ 2.13
EXOSC3-207ENST00000490516 NESP48681 1621 aa28.36■■■□□ 2.13
EXOSC3-207ENST00000490516 ATAD2BQ9ULI0 1458 aa28.23■■■□□ 2.11
EXOSC3-207ENST00000490516 THOC2Q8NI27 1593 aaKnown RBP28.23■■■□□ 2.11
EXOSC3-207ENST00000490516 HMGXB3Q12766 1538 aa28.13■■■□□ 2.09
EXOSC3-207ENST00000490516 SMARCA2P51531 1590 aa28.08■■■□□ 2.09
EXOSC3-207ENST00000490516 SMARCA4P51532 1647 aa28.01■■■□□ 2.07
EXOSC3-207ENST00000490516 KIF21AQ7Z4S6 1674 aa27.99■■■□□ 2.07
EXOSC3-207ENST00000490516 LAMC3Q9Y6N6 1575 aa27.94■■■□□ 2.06
EXOSC3-207ENST00000490516 BAZ1BQ9UIG0 1483 aaKnown RBP27.91■■■□□ 2.06
EXOSC3-207ENST00000490516 PDS5BQ9NTI5 1447 aa27.78■■■□□ 2.04
EXOSC3-207ENST00000490516 PEG3Q9GZU2 1588 aa27.7■■■□□ 2.03
EXOSC3-207ENST00000490516 BAZ1AQ9NRL2 1556 aaPredicted RBP27.7■■■□□ 2.03
EXOSC3-207ENST00000490516 MRC2Q9UBG0 1479 aa27.63■■■□□ 2.01
EXOSC3-207ENST00000490516 WDR62O43379 1518 aa27.6■■■□□ 2.01
EXOSC3-207ENST00000490516 CADPSQ9ULU8 1353 aa27.51■■□□□ 1.99
EXOSC3-207ENST00000490516 OSCARQ8IYS5 282 aa27.51■■□□□ 1.99
EXOSC3-207ENST00000490516 MROH2BQ7Z745 1585 aa27.48■■□□□ 1.99
EXOSC3-207ENST00000490516 CEP164Q9UPV0 1460 aa27.34■■□□□ 1.97
EXOSC3-207ENST00000490516 RIMBP3CA6NJZ7 1639 aa27.34■■□□□ 1.97
EXOSC3-207ENST00000490516 RIMBP3BA6NNM3 1639 aa27.34■■□□□ 1.97
EXOSC3-207ENST00000490516 RIMBP3Q9UFD9 1639 aa27.34■■□□□ 1.97
EXOSC3-207ENST00000490516 FANCD2Q9BXW9 1451 aa27.24■■□□□ 1.95
EXOSC3-207ENST00000490516 WIZO95785 1651 aa27.14■■□□□ 1.94
EXOSC3-207ENST00000490516 ARHGEF11O15085 1522 aa27.11■■□□□ 1.93
EXOSC3-207ENST00000490516 URB2Q14146 1524 aaKnown RBP27.1■■□□□ 1.93
EXOSC3-207ENST00000490516 CFTRP13569 1480 aa27.02■■□□□ 1.92
EXOSC3-207ENST00000490516 CYB5RLQ6IPT4 315 aa26.97■■□□□ 1.91
EXOSC3-207ENST00000490516 TRHP20396 242 aaPredicted RBP26.96■■□□□ 1.91
EXOSC3-207ENST00000490516 ZNF608Q9ULD9 1512 aaPredicted RBP26.92■■□□□ 1.9
EXOSC3-207ENST00000490516 AEBP2Q6ZN18 517 aaPredicted RBP26.82■■□□□ 1.88
EXOSC3-207ENST00000490516 IFT140Q96RY7 1462 aa26.81■■□□□ 1.88
EXOSC3-207ENST00000490516 ARAP1Q96P48 1450 aa26.8■■□□□ 1.88
EXOSC3-207ENST00000490516 PRDM2Q13029 1718 aa26.77■■□□□ 1.88
EXOSC3-207ENST00000490516 CHD1O14646 1710 aa26.75■■□□□ 1.87
EXOSC3-207ENST00000490516 EIF4G3O43432 1585 aaKnown RBP26.73■■□□□ 1.87
EXOSC3-207ENST00000490516 TOP2AP11388 1531 aaKnown RBP26.66■■□□□ 1.86
EXOSC3-207ENST00000490516 TOPBP1Q92547 1522 aa26.63■■□□□ 1.85
EXOSC3-207ENST00000490516 RSF1Q96T23 1441 aaPredicted RBP26.59■■□□□ 1.85
EXOSC3-207ENST00000490516 AQRO60306 1485 aaKnown RBP eCLIP26.55■■□□□ 1.842e-6■■■□□ 15.2
EXOSC3-207ENST00000490516 FBLN2P98095 1184 aa26.55■■□□□ 1.84
EXOSC3-207ENST00000490516 TARBP1Q13395 1621 aaKnown RBP26.49■■□□□ 1.83
EXOSC3-207ENST00000490516 DNMBPQ6XZF7 1577 aa26.45■■□□□ 1.82
EXOSC3-207ENST00000490516 ABCC8Q09428 1581 aa26.44■■□□□ 1.82
EXOSC3-207ENST00000490516 CCDC88BA6NC98 1476 aa26.39■■□□□ 1.82
EXOSC3-207ENST00000490516 CLASP1Q7Z460 1538 aa26.35■■□□□ 1.81
EXOSC3-207ENST00000490516 POLA1P09884 1462 aaPredicted RBP26.3■■□□□ 1.8
EXOSC3-207ENST00000490516 RAD54L2Q9Y4B4 1467 aa26.25■■□□□ 1.79
EXOSC3-207ENST00000490516 SNAPC4Q5SXM2 1469 aa26.24■■□□□ 1.79
EXOSC3-207ENST00000490516 TDRD9Q8NDG6 1382 aaKnown RBP26.24■■□□□ 1.79
EXOSC3-207ENST00000490516 SYNJ1O43426 1573 aa26.23■■□□□ 1.79
EXOSC3-207ENST00000490516 CHMP7Q8WUX9 453 aaPredicted RBP26.17■■□□□ 1.78
EXOSC3-207ENST00000490516 SOGA1O94964 1423 aa26.14■■□□□ 1.78
EXOSC3-207ENST00000490516 GAPVD1Q14C86 1478 aa26.12■■□□□ 1.77
EXOSC3-207ENST00000490516 MAGI1Q96QZ7 1491 aaPredicted RBP26.09■■□□□ 1.77
EXOSC3-207ENST00000490516 WDR97A6NE52 1622 aa26.07■■□□□ 1.76
EXOSC3-207ENST00000490516 SYNJ2O15056 1496 aa26.04■■□□□ 1.76
EXOSC3-207ENST00000490516 FGD5Q6ZNL6 1462 aa26.02■■□□□ 1.76
EXOSC3-207ENST00000490516 GRIN2BQ13224 1484 aa26.01■■□□□ 1.75
EXOSC3-207ENST00000490516 PBRM1Q86U86 1689 aa25.94■■□□□ 1.74
EXOSC3-207ENST00000490516 ERCC6L2Q5T890 1561 aa25.94■■□□□ 1.74
EXOSC3-207ENST00000490516 KIF13AQ9H1H9 1805 aa25.88■■□□□ 1.73
EXOSC3-207ENST00000490516 CUX1P39880 1505 aa25.86■■□□□ 1.73
EXOSC3-207ENST00000490516 ILDR1Q86SU0 546 aaPredicted RBP25.81■■□□□ 1.72
EXOSC3-207ENST00000490516 CEP170Q5SW79 1584 aa25.76■■□□□ 1.71
EXOSC3-207ENST00000490516 ABCA5Q8WWZ7 1642 aa25.72■■□□□ 1.71
EXOSC3-207ENST00000490516 GRIN2AQ12879 1464 aa25.69■■□□□ 1.7
EXOSC3-207ENST00000490516 SHROOM2Q13796 1616 aa25.66■■□□□ 1.7
EXOSC3-207ENST00000490516 KDM4FA0A1W2PPD8 638 aa25.65■■□□□ 1.7
EXOSC3-207ENST00000490516 ABCA10Q8WWZ4 1543 aa25.63■■□□□ 1.69
EXOSC3-207ENST00000490516 NUP160Q12769 1436 aa25.63■■□□□ 1.69
EXOSC3-207ENST00000490516 ADAMTS12P58397 1594 aa25.59■■□□□ 1.69
EXOSC3-207ENST00000490516 FAM69CQ0P6D2 419 aa25.56■■□□□ 1.68
EXOSC3-207ENST00000490516 ABCC10Q5T3U5 1492 aa25.53■■□□□ 1.68
EXOSC3-207ENST00000490516 KDM6BO15054 1643 aa25.5■■□□□ 1.67
EXOSC3-207ENST00000490516 DIP2BQ9P265 1576 aa25.48■■□□□ 1.67
EXOSC3-207ENST00000490516 PRG4Q92954 1404 aaPredicted RBP25.47■■□□□ 1.67
EXOSC3-207ENST00000490516 TSPOAP1O95153 1857 aa25.45■■□□□ 1.66
Retrieved 100 of 20,778 RNA–protein pairs in 13.9 ms