RNA–Protein interactions for RNA: ENST00000490484.7

RBM39-236, Transcript of RNA binding motif protein 39, humanhuman

TSL 5

Gene RBM39, Length 871 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RBM39-236ENST00000490484 NISCHQ9Y2I1 1504 aa25.68■■□□□ 1.7
RBM39-236ENST00000490484 CCDC180Q9P1Z9 1646 aa22.98■■□□□ 1.27
RBM39-236ENST00000490484 ABCC9O60706 1549 aa22.75■■□□□ 1.23
RBM39-236ENST00000490484 RB1CC1Q8TDY2 1594 aa21.75■■□□□ 1.07
RBM39-236ENST00000490484 NACADO15069 1562 aa21.64■■□□□ 1.05
RBM39-236ENST00000490484 DCAF8L2P0C7V8 631 aa21.54■■□□□ 1.04
RBM39-236ENST00000490484 MYO15BQ96JP2 1530 aa21.39■■□□□ 1.02
RBM39-236ENST00000490484 ZCCHC6Q5VYS8 1495 aaKnown RBP21.36■■□□□ 1.01
RBM39-236ENST00000490484 UNC13AQ9UPW8 1703 aa21.28■■□□□ 1
RBM39-236ENST00000490484 DCAF1Q9Y4B6 1507 aa21.21■□□□□ 0.99
RBM39-236ENST00000490484 PABPN1Q86U42 306 aaKnown RBP eCLIP21.18■□□□□ 0.983e-28■□□□□ 8.4
RBM39-236ENST00000490484 BICRAQ9NZM4 1560 aa21.1■□□□□ 0.97
RBM39-236ENST00000490484 DNAJC5BQ9UF47 199 aa21.06■□□□□ 0.96
RBM39-236ENST00000490484 SCRIBQ14160 1630 aa20.99■□□□□ 0.95
RBM39-236ENST00000490484 SHROOM4Q9ULL8 1493 aa20.84■□□□□ 0.93
RBM39-236ENST00000490484 EIF4G1Q04637 1599 aaKnown RBP20.59■□□□□ 0.89
RBM39-236ENST00000490484 CC2D2AQ9P2K1 1620 aa20.56■□□□□ 0.88
RBM39-236ENST00000490484 CECR2Q9BXF3 1484 aa20.46■□□□□ 0.87
RBM39-236ENST00000490484 SMARCA4P51532 1647 aa20.02■□□□□ 0.79
RBM39-236ENST00000490484 NCAPD3P42695 1498 aa19.94■□□□□ 0.78
RBM39-236ENST00000490484 ATAD2BQ9ULI0 1458 aa19.94■□□□□ 0.78
RBM39-236ENST00000490484 BAZ1AQ9NRL2 1556 aaPredicted RBP19.93■□□□□ 0.78
RBM39-236ENST00000490484 SMARCA2P51531 1590 aa19.91■□□□□ 0.78
RBM39-236ENST00000490484 HMGXB3Q12766 1538 aa19.86■□□□□ 0.77
RBM39-236ENST00000490484 MROH2BQ7Z745 1585 aa19.8■□□□□ 0.76
RBM39-236ENST00000490484 BAZ1BQ9UIG0 1483 aaKnown RBP19.79■□□□□ 0.76
RBM39-236ENST00000490484 PEG3Q9GZU2 1588 aa19.79■□□□□ 0.76
RBM39-236ENST00000490484 ERCC6Q03468 1493 aa19.64■□□□□ 0.73
RBM39-236ENST00000490484 NESP48681 1621 aa19.61■□□□□ 0.73
RBM39-236ENST00000490484 WIZO95785 1651 aa19.59■□□□□ 0.73
RBM39-236ENST00000490484 LAMC3Q9Y6N6 1575 aa19.5■□□□□ 0.71
RBM39-236ENST00000490484 CUX2O14529 1486 aa19.5■□□□□ 0.71
RBM39-236ENST00000490484 RSF1Q96T23 1441 aaPredicted RBP19.45■□□□□ 0.7
RBM39-236ENST00000490484 THOC2Q8NI27 1593 aaKnown RBP19.4■□□□□ 0.7
RBM39-236ENST00000490484 KIF21AQ7Z4S6 1674 aa19.39■□□□□ 0.69
RBM39-236ENST00000490484 TOP2AP11388 1531 aaKnown RBP19.36■□□□□ 0.69
RBM39-236ENST00000490484 PDS5BQ9NTI5 1447 aa19.35■□□□□ 0.69
RBM39-236ENST00000490484 CADPSQ9ULU8 1353 aa19.35■□□□□ 0.69
RBM39-236ENST00000490484 MRC2Q9UBG0 1479 aa19.21■□□□□ 0.67
RBM39-236ENST00000490484 CFTRP13569 1480 aa19.2■□□□□ 0.66
RBM39-236ENST00000490484 CEP164Q9UPV0 1460 aa19.19■□□□□ 0.66
RBM39-236ENST00000490484 FANCD2Q9BXW9 1451 aa19.17■□□□□ 0.66
RBM39-236ENST00000490484 WDR62O43379 1518 aa19.17■□□□□ 0.66
RBM39-236ENST00000490484 DNAJC5Q9H3Z4 198 aa19.15■□□□□ 0.66
RBM39-236ENST00000490484 CCDC88BA6NC98 1476 aa19.1■□□□□ 0.65
RBM39-236ENST00000490484 PRDM2Q13029 1718 aa19.08■□□□□ 0.65
RBM39-236ENST00000490484 URB2Q14146 1524 aaKnown RBP19■□□□□ 0.63
RBM39-236ENST00000490484 TOPBP1Q92547 1522 aa18.84■□□□□ 0.61
RBM39-236ENST00000490484 DNMBPQ6XZF7 1577 aa18.8■□□□□ 0.6
RBM39-236ENST00000490484 IFT140Q96RY7 1462 aa18.77■□□□□ 0.6
RBM39-236ENST00000490484 ABCC8Q09428 1581 aa18.77■□□□□ 0.6
RBM39-236ENST00000490484 SUPT5HO00267 1087 aaKnown RBP18.75■□□□□ 0.59
RBM39-236ENST00000490484 ZNF608Q9ULD9 1512 aaPredicted RBP18.74■□□□□ 0.59
RBM39-236ENST00000490484 EIF4G3O43432 1585 aaKnown RBP18.68■□□□□ 0.58
RBM39-236ENST00000490484 POLA1P09884 1462 aaPredicted RBP18.66■□□□□ 0.58
RBM39-236ENST00000490484 TARBP1Q13395 1621 aaKnown RBP18.66■□□□□ 0.58
RBM39-236ENST00000490484 CUX1P39880 1505 aa18.6■□□□□ 0.57
RBM39-236ENST00000490484 FGD5Q6ZNL6 1462 aa18.58■□□□□ 0.57
RBM39-236ENST00000490484 OSCARQ8IYS5 282 aa18.58■□□□□ 0.56
RBM39-236ENST00000490484 RAD54L2Q9Y4B4 1467 aa18.58■□□□□ 0.56
RBM39-236ENST00000490484 AQRO60306 1485 aaKnown RBP eCLIP18.57■□□□□ 0.569e-11■■■■□ 21
RBM39-236ENST00000490484 SOGA1O94964 1423 aa18.54■□□□□ 0.56
RBM39-236ENST00000490484 CHD1O14646 1710 aa18.49■□□□□ 0.55
RBM39-236ENST00000490484 TDRD9Q8NDG6 1382 aaKnown RBP18.48■□□□□ 0.55
RBM39-236ENST00000490484 TRIM41Q8WV44 630 aa18.48■□□□□ 0.55
RBM39-236ENST00000490484 WDR97A6NE52 1622 aa18.48■□□□□ 0.55
RBM39-236ENST00000490484 SNAPC4Q5SXM2 1469 aa18.43■□□□□ 0.54
RBM39-236ENST00000490484 RIMBP3CA6NJZ7 1639 aa18.4■□□□□ 0.54
RBM39-236ENST00000490484 RIMBP3BA6NNM3 1639 aa18.4■□□□□ 0.54
RBM39-236ENST00000490484 RIMBP3Q9UFD9 1639 aa18.4■□□□□ 0.54
RBM39-236ENST00000490484 FBLN2P98095 1184 aa18.39■□□□□ 0.53
RBM39-236ENST00000490484 GRIN2BQ13224 1484 aa18.38■□□□□ 0.53
RBM39-236ENST00000490484 BIVM-ERCC5R4GMW8 1640 aa18.38■□□□□ 0.53
RBM39-236ENST00000490484 PBRM1Q86U86 1689 aa18.38■□□□□ 0.53
RBM39-236ENST00000490484 MAGI1Q96QZ7 1491 aaPredicted RBP18.37■□□□□ 0.53
RBM39-236ENST00000490484 ARHGEF11O15085 1522 aa18.37■□□□□ 0.53
RBM39-236ENST00000490484 ABCA10Q8WWZ4 1543 aa18.37■□□□□ 0.53
RBM39-236ENST00000490484 SYNJ1O43426 1573 aa18.37■□□□□ 0.53
RBM39-236ENST00000490484 TOP2BQ02880 1626 aa18.36■□□□□ 0.53
RBM39-236ENST00000490484 WRNQ14191 1432 aaPredicted RBP eCLIP18.36■□□□□ 0.53
RBM39-236ENST00000490484 ABCA5Q8WWZ7 1642 aa18.36■□□□□ 0.53
RBM39-236ENST00000490484 GAPVD1Q14C86 1478 aa18.34■□□□□ 0.53
RBM39-236ENST00000490484 SYNJ2O15056 1496 aa18.3■□□□□ 0.52
RBM39-236ENST00000490484 CHMP7Q8WUX9 453 aaPredicted RBP18.27■□□□□ 0.52
RBM39-236ENST00000490484 CLASP1Q7Z460 1538 aa18.27■□□□□ 0.51
RBM39-236ENST00000490484 ADAMTS12P58397 1594 aa18.22■□□□□ 0.51
RBM39-236ENST00000490484 ARAP1Q96P48 1450 aa18.2■□□□□ 0.5
RBM39-236ENST00000490484 GRIN2AQ12879 1464 aa18.16■□□□□ 0.5
RBM39-236ENST00000490484 CYB5RLQ6IPT4 315 aa18.15■□□□□ 0.5
RBM39-236ENST00000490484 ERICH3Q5RHP9 1530 aa18.14■□□□□ 0.49
RBM39-236ENST00000490484 FHAD1B1AJZ9 1412 aa18.11■□□□□ 0.49
RBM39-236ENST00000490484 CEP170Q5SW79 1584 aa18.1■□□□□ 0.49
RBM39-236ENST00000490484 NUP160Q12769 1436 aa18.07■□□□□ 0.48
RBM39-236ENST00000490484 ERCC6L2Q5T890 1561 aa18■□□□□ 0.47
RBM39-236ENST00000490484 KIF27Q86VH2 1401 aa17.99■□□□□ 0.47
RBM39-236ENST00000490484 SHROOM2Q13796 1616 aa17.99■□□□□ 0.47
RBM39-236ENST00000490484 RUSC2Q8N2Y8 1516 aa17.97■□□□□ 0.47
RBM39-236ENST00000490484 CUL7Q14999 1698 aa17.95■□□□□ 0.46
RBM39-236ENST00000490484 IGF1RP08069 1367 aa17.91■□□□□ 0.46
RBM39-236ENST00000490484 TRHP20396 242 aaPredicted RBP17.89■□□□□ 0.45
Retrieved 100 of 20,778 RNA–protein pairs in 24.9 ms