RNA–Protein interactions for RNA: ENST00000490475.1

TTC28-207, Transcript of tetratricopeptide repeat domain 28, humanhuman

TSL 5

Gene TTC28, Length 724 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TTC28-207ENST00000490475 NISCHQ9Y2I1 1504 aa25.69■■□□□ 1.7
TTC28-207ENST00000490475 CCDC180Q9P1Z9 1646 aa23.11■■□□□ 1.29
TTC28-207ENST00000490475 ABCC9O60706 1549 aa22.9■■□□□ 1.26
TTC28-207ENST00000490475 RB1CC1Q8TDY2 1594 aa21.95■■□□□ 1.11
TTC28-207ENST00000490475 NACADO15069 1562 aa21.83■■□□□ 1.09
TTC28-207ENST00000490475 DCAF8L2P0C7V8 631 aa21.62■■□□□ 1.05
TTC28-207ENST00000490475 MYO15BQ96JP2 1530 aa21.6■■□□□ 1.05
TTC28-207ENST00000490475 UNC13AQ9UPW8 1703 aa21.36■■□□□ 1.01
TTC28-207ENST00000490475 DNAJC5BQ9UF47 199 aa21.34■■□□□ 1.01
TTC28-207ENST00000490475 DCAF1Q9Y4B6 1507 aa21.32■■□□□ 1
TTC28-207ENST00000490475 ZCCHC6Q5VYS8 1495 aaKnown RBP21.31■■□□□ 1
TTC28-207ENST00000490475 PABPN1Q86U42 306 aaKnown RBP eCLIP21.29■■□□□ 1
TTC28-207ENST00000490475 BICRAQ9NZM4 1560 aa21.19■□□□□ 0.98
TTC28-207ENST00000490475 SHROOM4Q9ULL8 1493 aa21.13■□□□□ 0.97
TTC28-207ENST00000490475 SCRIBQ14160 1630 aa20.93■□□□□ 0.94
TTC28-207ENST00000490475 CC2D2AQ9P2K1 1620 aa20.73■□□□□ 0.91
TTC28-207ENST00000490475 EIF4G1Q04637 1599 aaKnown RBP20.72■□□□□ 0.91
TTC28-207ENST00000490475 CECR2Q9BXF3 1484 aa20.68■□□□□ 0.9
TTC28-207ENST00000490475 NCAPD3P42695 1498 aa20.12■□□□□ 0.81
TTC28-207ENST00000490475 SMARCA2P51531 1590 aa20.05■□□□□ 0.8
TTC28-207ENST00000490475 ATAD2BQ9ULI0 1458 aa20.03■□□□□ 0.8
TTC28-207ENST00000490475 SMARCA4P51532 1647 aa20.02■□□□□ 0.8
TTC28-207ENST00000490475 HMGXB3Q12766 1538 aa20■□□□□ 0.79
TTC28-207ENST00000490475 BAZ1AQ9NRL2 1556 aaPredicted RBP20■□□□□ 0.79
TTC28-207ENST00000490475 PEG3Q9GZU2 1588 aa19.88■□□□□ 0.77
TTC28-207ENST00000490475 ERCC6Q03468 1493 aa19.86■□□□□ 0.77
TTC28-207ENST00000490475 BAZ1BQ9UIG0 1483 aaKnown RBP19.86■□□□□ 0.77
TTC28-207ENST00000490475 CUX2O14529 1486 aa19.85■□□□□ 0.77
TTC28-207ENST00000490475 MROH2BQ7Z745 1585 aa19.74■□□□□ 0.75
TTC28-207ENST00000490475 DNAJC5Q9H3Z4 198 aa19.7■□□□□ 0.74
TTC28-207ENST00000490475 LAMC3Q9Y6N6 1575 aa19.69■□□□□ 0.74
TTC28-207ENST00000490475 NESP48681 1621 aa19.65■□□□□ 0.74
TTC28-207ENST00000490475 PDS5BQ9NTI5 1447 aa19.59■□□□□ 0.73
TTC28-207ENST00000490475 CADPSQ9ULU8 1353 aa19.51■□□□□ 0.71
TTC28-207ENST00000490475 THOC2Q8NI27 1593 aaKnown RBP19.51■□□□□ 0.71
TTC28-207ENST00000490475 WIZO95785 1651 aa19.5■□□□□ 0.71
TTC28-207ENST00000490475 KIF21AQ7Z4S6 1674 aa19.46■□□□□ 0.71
TTC28-207ENST00000490475 RSF1Q96T23 1441 aaPredicted RBP19.38■□□□□ 0.69
TTC28-207ENST00000490475 MRC2Q9UBG0 1479 aa19.35■□□□□ 0.69
TTC28-207ENST00000490475 TOP2AP11388 1531 aaKnown RBP19.33■□□□□ 0.68
TTC28-207ENST00000490475 CEP164Q9UPV0 1460 aa19.3■□□□□ 0.68
TTC28-207ENST00000490475 WDR62O43379 1518 aa19.3■□□□□ 0.68
TTC28-207ENST00000490475 CFTRP13569 1480 aa19.29■□□□□ 0.68
TTC28-207ENST00000490475 FANCD2Q9BXW9 1451 aa19.26■□□□□ 0.67
TTC28-207ENST00000490475 PRDM2Q13029 1718 aa19.14■□□□□ 0.66
TTC28-207ENST00000490475 CCDC88BA6NC98 1476 aa19.07■□□□□ 0.64
TTC28-207ENST00000490475 URB2Q14146 1524 aaKnown RBP19.05■□□□□ 0.64
TTC28-207ENST00000490475 ABCC8Q09428 1581 aa18.99■□□□□ 0.63
TTC28-207ENST00000490475 IFT140Q96RY7 1462 aa18.93■□□□□ 0.62
TTC28-207ENST00000490475 OSCARQ8IYS5 282 aa18.93■□□□□ 0.62
TTC28-207ENST00000490475 TOPBP1Q92547 1522 aa18.9■□□□□ 0.62
TTC28-207ENST00000490475 DNMBPQ6XZF7 1577 aa18.86■□□□□ 0.61
TTC28-207ENST00000490475 TRIM41Q8WV44 630 aa18.79■□□□□ 0.6
TTC28-207ENST00000490475 ZNF608Q9ULD9 1512 aaPredicted RBP18.77■□□□□ 0.6
TTC28-207ENST00000490475 EIF4G3O43432 1585 aaKnown RBP18.73■□□□□ 0.59
TTC28-207ENST00000490475 TARBP1Q13395 1621 aaKnown RBP18.71■□□□□ 0.58
TTC28-207ENST00000490475 POLA1P09884 1462 aaPredicted RBP18.7■□□□□ 0.58
TTC28-207ENST00000490475 WDR97A6NE52 1622 aa18.67■□□□□ 0.58
TTC28-207ENST00000490475 SOGA1O94964 1423 aa18.64■□□□□ 0.57
TTC28-207ENST00000490475 AQRO60306 1485 aaKnown RBP eCLIP18.64■□□□□ 0.57
TTC28-207ENST00000490475 RIMBP3CA6NJZ7 1639 aa18.6■□□□□ 0.57
TTC28-207ENST00000490475 RIMBP3BA6NNM3 1639 aa18.6■□□□□ 0.57
TTC28-207ENST00000490475 RIMBP3Q9UFD9 1639 aa18.6■□□□□ 0.57
TTC28-207ENST00000490475 FGD5Q6ZNL6 1462 aa18.58■□□□□ 0.57
TTC28-207ENST00000490475 CHD1O14646 1710 aa18.57■□□□□ 0.56
TTC28-207ENST00000490475 ARHGEF11O15085 1522 aa18.57■□□□□ 0.56
TTC28-207ENST00000490475 RAD54L2Q9Y4B4 1467 aa18.57■□□□□ 0.56
TTC28-207ENST00000490475 CUX1P39880 1505 aa18.55■□□□□ 0.56
TTC28-207ENST00000490475 SUPT5HO00267 1087 aaKnown RBP18.54■□□□□ 0.56
TTC28-207ENST00000490475 FBLN2P98095 1184 aa18.54■□□□□ 0.56
TTC28-207ENST00000490475 TDRD9Q8NDG6 1382 aaKnown RBP18.54■□□□□ 0.56
TTC28-207ENST00000490475 MAGI1Q96QZ7 1491 aaPredicted RBP18.52■□□□□ 0.55
TTC28-207ENST00000490475 GRIN2BQ13224 1484 aa18.5■□□□□ 0.55
TTC28-207ENST00000490475 SNAPC4Q5SXM2 1469 aa18.47■□□□□ 0.55
TTC28-207ENST00000490475 CHMP7Q8WUX9 453 aaPredicted RBP18.47■□□□□ 0.55
TTC28-207ENST00000490475 SYNJ1O43426 1573 aa18.44■□□□□ 0.54
TTC28-207ENST00000490475 ABCA10Q8WWZ4 1543 aa18.43■□□□□ 0.54
TTC28-207ENST00000490475 SYNJ2O15056 1496 aa18.42■□□□□ 0.54
TTC28-207ENST00000490475 GAPVD1Q14C86 1478 aa18.42■□□□□ 0.54
TTC28-207ENST00000490475 CYB5RLQ6IPT4 315 aa18.41■□□□□ 0.54
TTC28-207ENST00000490475 PBRM1Q86U86 1689 aa18.39■□□□□ 0.53
TTC28-207ENST00000490475 WRNQ14191 1432 aaPredicted RBP eCLIP18.39■□□□□ 0.53
TTC28-207ENST00000490475 CLASP1Q7Z460 1538 aa18.38■□□□□ 0.53
TTC28-207ENST00000490475 ABCA5Q8WWZ7 1642 aa18.36■□□□□ 0.53
TTC28-207ENST00000490475 ARAP1Q96P48 1450 aa18.36■□□□□ 0.53
TTC28-207ENST00000490475 TOP2BQ02880 1626 aa18.34■□□□□ 0.53
TTC28-207ENST00000490475 BIVM-ERCC5R4GMW8 1640 aa18.34■□□□□ 0.53
TTC28-207ENST00000490475 GRIN2AQ12879 1464 aa18.23■□□□□ 0.51
TTC28-207ENST00000490475 ERICH3Q5RHP9 1530 aa18.23■□□□□ 0.51
TTC28-207ENST00000490475 TRHP20396 242 aaPredicted RBP18.22■□□□□ 0.51
TTC28-207ENST00000490475 FHAD1B1AJZ9 1412 aa18.22■□□□□ 0.51
TTC28-207ENST00000490475 ADAMTS12P58397 1594 aa18.21■□□□□ 0.51
TTC28-207ENST00000490475 NUP160Q12769 1436 aa18.17■□□□□ 0.5
TTC28-207ENST00000490475 CEP170Q5SW79 1584 aa18.11■□□□□ 0.49
TTC28-207ENST00000490475 SHROOM2Q13796 1616 aa18.09■□□□□ 0.49
TTC28-207ENST00000490475 KIF27Q86VH2 1401 aa18.02■□□□□ 0.48
TTC28-207ENST00000490475 JPH4Q96JJ6 628 aa18■□□□□ 0.47
TTC28-207ENST00000490475 ERCC6L2Q5T890 1561 aa18■□□□□ 0.47
TTC28-207ENST00000490475 CUL7Q14999 1698 aa17.98■□□□□ 0.47
TTC28-207ENST00000490475 PRG4Q92954 1404 aaPredicted RBP17.98■□□□□ 0.47
Retrieved 100 of 20,778 RNA–protein pairs in 9.4 ms