RNA–Protein interactions for RNA: ENST00000490398.5

COL9A3-214, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 4

Gene COL9A3, Length 496 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-214ENST00000490398 NISCHQ9Y2I1 1504 aa44.53■■■■■ 4.72
COL9A3-214ENST00000490398 CCDC180Q9P1Z9 1646 aa39.55■■■■□ 3.92
COL9A3-214ENST00000490398 ABCC9O60706 1549 aa39.1■■■■□ 3.85
COL9A3-214ENST00000490398 DCAF8L2P0C7V8 631 aa37.36■■■■□ 3.57
COL9A3-214ENST00000490398 RB1CC1Q8TDY2 1594 aa37.36■■■■□ 3.57
COL9A3-214ENST00000490398 NACADO15069 1562 aa37.27■■■■□ 3.56
COL9A3-214ENST00000490398 ZCCHC6Q5VYS8 1495 aaKnown RBP37.04■■■■□ 3.52
COL9A3-214ENST00000490398 MYO15BQ96JP2 1530 aa36.95■■■■□ 3.51
COL9A3-214ENST00000490398 DCAF1Q9Y4B6 1507 aa36.75■■■■□ 3.47
COL9A3-214ENST00000490398 PABPN1Q86U42 306 aaKnown RBP eCLIP36.57■■■■□ 3.446e-12■■■□□ 16
COL9A3-214ENST00000490398 UNC13AQ9UPW8 1703 aa36.56■■■■□ 3.44
COL9A3-214ENST00000490398 BICRAQ9NZM4 1560 aa36.38■■■■□ 3.41
COL9A3-214ENST00000490398 DNAJC5BQ9UF47 199 aa36.22■■■■□ 3.39
COL9A3-214ENST00000490398 SCRIBQ14160 1630 aa36.22■■■■□ 3.39
COL9A3-214ENST00000490398 SHROOM4Q9ULL8 1493 aa35.77■■■■□ 3.32
COL9A3-214ENST00000490398 EIF4G1Q04637 1599 aaKnown RBP35.38■■■■□ 3.25
COL9A3-214ENST00000490398 CC2D2AQ9P2K1 1620 aa35.3■■■■□ 3.24
COL9A3-214ENST00000490398 CECR2Q9BXF3 1484 aa35.1■■■■□ 3.21
COL9A3-214ENST00000490398 SMARCA4P51532 1647 aa34.58■■■■□ 3.13
COL9A3-214ENST00000490398 ATAD2BQ9ULI0 1458 aa34.48■■■■□ 3.11
COL9A3-214ENST00000490398 NCAPD3P42695 1498 aa34.46■■■■□ 3.11
COL9A3-214ENST00000490398 BAZ1AQ9NRL2 1556 aaPredicted RBP34.45■■■■□ 3.11
COL9A3-214ENST00000490398 MROH2BQ7Z745 1585 aa34.37■■■■□ 3.09
COL9A3-214ENST00000490398 SMARCA2P51531 1590 aa34.32■■■■□ 3.09
COL9A3-214ENST00000490398 HMGXB3Q12766 1538 aa34.21■■■■□ 3.07
COL9A3-214ENST00000490398 PEG3Q9GZU2 1588 aa34.21■■■■□ 3.07
COL9A3-214ENST00000490398 BAZ1BQ9UIG0 1483 aaKnown RBP34.14■■■■□ 3.06
COL9A3-214ENST00000490398 WIZO95785 1651 aa33.96■■■■□ 3.03
COL9A3-214ENST00000490398 RSF1Q96T23 1441 aaPredicted RBP33.9■■■■□ 3.02
COL9A3-214ENST00000490398 NESP48681 1621 aa33.81■■■■□ 3
COL9A3-214ENST00000490398 ERCC6Q03468 1493 aa33.63■■■□□ 2.97
COL9A3-214ENST00000490398 TOP2AP11388 1531 aaKnown RBP33.53■■■□□ 2.96
COL9A3-214ENST00000490398 LAMC3Q9Y6N6 1575 aa33.52■■■□□ 2.96
COL9A3-214ENST00000490398 CADPSQ9ULU8 1353 aa33.46■■■□□ 2.95
COL9A3-214ENST00000490398 PDS5BQ9NTI5 1447 aa33.32■■■□□ 2.92
COL9A3-214ENST00000490398 CUX2O14529 1486 aa33.31■■■□□ 2.92
COL9A3-214ENST00000490398 KIF21AQ7Z4S6 1674 aa33.29■■■□□ 2.92
COL9A3-214ENST00000490398 THOC2Q8NI27 1593 aaKnown RBP33.25■■■□□ 2.91
COL9A3-214ENST00000490398 CCDC88BA6NC98 1476 aa33.22■■■□□ 2.91
COL9A3-214ENST00000490398 CFTRP13569 1480 aa33.21■■■□□ 2.91
COL9A3-214ENST00000490398 FANCD2Q9BXW9 1451 aa33.07■■■□□ 2.88
COL9A3-214ENST00000490398 MRC2Q9UBG0 1479 aa33.03■■■□□ 2.88
COL9A3-214ENST00000490398 CEP164Q9UPV0 1460 aa33.02■■■□□ 2.88
COL9A3-214ENST00000490398 WDR62O43379 1518 aa32.92■■■□□ 2.86
COL9A3-214ENST00000490398 SUPT5HO00267 1087 aaKnown RBP32.92■■■□□ 2.86
COL9A3-214ENST00000490398 URB2Q14146 1524 aaKnown RBP32.81■■■□□ 2.84
COL9A3-214ENST00000490398 PRDM2Q13029 1718 aa32.8■■■□□ 2.84
COL9A3-214ENST00000490398 DNAJC5Q9H3Z4 198 aa32.64■■■□□ 2.82
COL9A3-214ENST00000490398 TOPBP1Q92547 1522 aa32.53■■■□□ 2.8
COL9A3-214ENST00000490398 DNMBPQ6XZF7 1577 aa32.43■■■□□ 2.78
COL9A3-214ENST00000490398 ABCC8Q09428 1581 aa32.38■■■□□ 2.77
COL9A3-214ENST00000490398 IFT140Q96RY7 1462 aa32.34■■■□□ 2.77
COL9A3-214ENST00000490398 ZNF608Q9ULD9 1512 aaPredicted RBP32.33■■■□□ 2.77
COL9A3-214ENST00000490398 POLA1P09884 1462 aaPredicted RBP32.25■■■□□ 2.75
COL9A3-214ENST00000490398 CUX1P39880 1505 aa32.25■■■□□ 2.75
COL9A3-214ENST00000490398 TARBP1Q13395 1621 aaKnown RBP32.19■■■□□ 2.74
COL9A3-214ENST00000490398 RAD54L2Q9Y4B4 1467 aa32.18■■■□□ 2.74
COL9A3-214ENST00000490398 FGD5Q6ZNL6 1462 aa32.15■■■□□ 2.74
COL9A3-214ENST00000490398 AQRO60306 1485 aaKnown RBP eCLIP32.1■■■□□ 2.73
COL9A3-214ENST00000490398 SOGA1O94964 1423 aa32.1■■■□□ 2.73
COL9A3-214ENST00000490398 EIF4G3O43432 1585 aaKnown RBP32.1■■■□□ 2.73
COL9A3-214ENST00000490398 TDRD9Q8NDG6 1382 aaKnown RBP32.02■■■□□ 2.72
COL9A3-214ENST00000490398 OSCARQ8IYS5 282 aa31.94■■■□□ 2.7
COL9A3-214ENST00000490398 WRNQ14191 1432 aaPredicted RBP eCLIP31.92■■■□□ 2.7
COL9A3-214ENST00000490398 SYNJ1O43426 1573 aa31.9■■■□□ 2.7
COL9A3-214ENST00000490398 WDR97A6NE52 1622 aa31.83■■■□□ 2.69
COL9A3-214ENST00000490398 TOP2BQ02880 1626 aa31.83■■■□□ 2.69
COL9A3-214ENST00000490398 BIVM-ERCC5R4GMW8 1640 aa31.82■■■□□ 2.68
COL9A3-214ENST00000490398 ABCA10Q8WWZ4 1543 aa31.78■■■□□ 2.68
COL9A3-214ENST00000490398 SNAPC4Q5SXM2 1469 aa31.76■■■□□ 2.67
COL9A3-214ENST00000490398 FBLN2P98095 1184 aa31.73■■■□□ 2.67
COL9A3-214ENST00000490398 GRIN2BQ13224 1484 aa31.72■■■□□ 2.67
COL9A3-214ENST00000490398 GAPVD1Q14C86 1478 aa31.72■■■□□ 2.67
COL9A3-214ENST00000490398 CHD1O14646 1710 aa31.71■■■□□ 2.67
COL9A3-214ENST00000490398 ABCA5Q8WWZ7 1642 aa31.67■■■□□ 2.66
COL9A3-214ENST00000490398 MAGI1Q96QZ7 1491 aaPredicted RBP31.62■■■□□ 2.65
COL9A3-214ENST00000490398 PBRM1Q86U86 1689 aa31.61■■■□□ 2.65
COL9A3-214ENST00000490398 CHMP7Q8WUX9 453 aaPredicted RBP31.57■■■□□ 2.64
COL9A3-214ENST00000490398 SYNJ2O15056 1496 aa31.54■■■□□ 2.64
COL9A3-214ENST00000490398 TRIM41Q8WV44 630 aa31.52■■■□□ 2.64
COL9A3-214ENST00000490398 RIMBP3CA6NJZ7 1639 aa31.47■■■□□ 2.63
COL9A3-214ENST00000490398 RIMBP3BA6NNM3 1639 aa31.47■■■□□ 2.63
COL9A3-214ENST00000490398 RIMBP3Q9UFD9 1639 aa31.47■■■□□ 2.63
COL9A3-214ENST00000490398 ARHGEF11O15085 1522 aa31.44■■■□□ 2.62
COL9A3-214ENST00000490398 CLASP1Q7Z460 1538 aa31.4■■■□□ 2.62
COL9A3-214ENST00000490398 ADAMTS12P58397 1594 aa31.39■■■□□ 2.62
COL9A3-214ENST00000490398 ERICH3Q5RHP9 1530 aa31.35■■■□□ 2.61
COL9A3-214ENST00000490398 GRIN2AQ12879 1464 aa31.33■■■□□ 2.61
COL9A3-214ENST00000490398 FHAD1B1AJZ9 1412 aa31.32■■■□□ 2.61
COL9A3-214ENST00000490398 KIF27Q86VH2 1401 aa31.23■■■□□ 2.59
COL9A3-214ENST00000490398 CEP170Q5SW79 1584 aa31.22■■■□□ 2.59
COL9A3-214ENST00000490398 ARAP1Q96P48 1450 aa31.22■■■□□ 2.59
COL9A3-214ENST00000490398 CYB5RLQ6IPT4 315 aa31.22■■■□□ 2.59
COL9A3-214ENST00000490398 IGF1RP08069 1367 aa31.21■■■□□ 2.59
COL9A3-214ENST00000490398 NUP160Q12769 1436 aa31.21■■■□□ 2.59
COL9A3-214ENST00000490398 ERCC6L2Q5T890 1561 aa31.06■■■□□ 2.56
COL9A3-214ENST00000490398 RUSC2Q8N2Y8 1516 aa31.06■■■□□ 2.56
COL9A3-214ENST00000490398 CUL7Q14999 1698 aa31■■■□□ 2.55
COL9A3-214ENST00000490398 CARMIL1Q5VZK9 1371 aa30.98■■■□□ 2.55
COL9A3-214ENST00000490398 SHROOM2Q13796 1616 aa30.96■■■□□ 2.55
Retrieved 100 of 20,778 RNA–protein pairs in 68.6 ms