RNA–Protein interactions for RNA: ENST00000490346.1

ECM1-205, Transcript of extracellular matrix protein 1, humanhuman

TSL 3

Gene ECM1, Length 502 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ECM1-205ENST00000490346 NISCHQ9Y2I1 1504 aa22.19■■□□□ 1.14
ECM1-205ENST00000490346 CCDC180Q9P1Z9 1646 aa19.69■□□□□ 0.74
ECM1-205ENST00000490346 ABCC9O60706 1549 aa19.24■□□□□ 0.67
ECM1-205ENST00000490346 DCAF8L2P0C7V8 631 aa18.54■□□□□ 0.56
ECM1-205ENST00000490346 RB1CC1Q8TDY2 1594 aa18.51■□□□□ 0.55
ECM1-205ENST00000490346 ZCCHC6Q5VYS8 1495 aaKnown RBP18.5■□□□□ 0.55
ECM1-205ENST00000490346 NACADO15069 1562 aa18.5■□□□□ 0.55
ECM1-205ENST00000490346 MYO15BQ96JP2 1530 aa18.38■□□□□ 0.53
ECM1-205ENST00000490346 DCAF1Q9Y4B6 1507 aa18.33■□□□□ 0.53
ECM1-205ENST00000490346 UNC13AQ9UPW8 1703 aa18.11■□□□□ 0.49
ECM1-205ENST00000490346 SCRIBQ14160 1630 aa18.01■□□□□ 0.47
ECM1-205ENST00000490346 PABPN1Q86U42 306 aaKnown RBP eCLIP17.99■□□□□ 0.47
ECM1-205ENST00000490346 BICRAQ9NZM4 1560 aa17.96■□□□□ 0.46
ECM1-205ENST00000490346 SHROOM4Q9ULL8 1493 aa17.73■□□□□ 0.43
ECM1-205ENST00000490346 DNAJC5BQ9UF47 199 aa17.59■□□□□ 0.41
ECM1-205ENST00000490346 EIF4G1Q04637 1599 aaKnown RBP17.47■□□□□ 0.39
ECM1-205ENST00000490346 CC2D2AQ9P2K1 1620 aa17.39■□□□□ 0.38
ECM1-205ENST00000490346 CECR2Q9BXF3 1484 aa17.3■□□□□ 0.36
ECM1-205ENST00000490346 SMARCA4P51532 1647 aa17.21■□□□□ 0.35
ECM1-205ENST00000490346 BAZ1AQ9NRL2 1556 aaPredicted RBP17.19■□□□□ 0.34
ECM1-205ENST00000490346 MROH2BQ7Z745 1585 aa17.12■□□□□ 0.33
ECM1-205ENST00000490346 ATAD2BQ9ULI0 1458 aa17.1■□□□□ 0.33
ECM1-205ENST00000490346 SMARCA2P51531 1590 aa17.07■□□□□ 0.32
ECM1-205ENST00000490346 NCAPD3P42695 1498 aa17.06■□□□□ 0.32
ECM1-205ENST00000490346 PEG3Q9GZU2 1588 aa17.02■□□□□ 0.31
ECM1-205ENST00000490346 HMGXB3Q12766 1538 aa16.99■□□□□ 0.31
ECM1-205ENST00000490346 BAZ1BQ9UIG0 1483 aaKnown RBP16.96■□□□□ 0.31
ECM1-205ENST00000490346 WIZO95785 1651 aa16.95■□□□□ 0.3
ECM1-205ENST00000490346 RSF1Q96T23 1441 aaPredicted RBP16.94■□□□□ 0.3
ECM1-205ENST00000490346 TOP2AP11388 1531 aaKnown RBP16.75■□□□□ 0.27
ECM1-205ENST00000490346 NESP48681 1621 aa16.67■□□□□ 0.26
ECM1-205ENST00000490346 LAMC3Q9Y6N6 1575 aa16.6■□□□□ 0.25
ECM1-205ENST00000490346 SUPT5HO00267 1087 aaKnown RBP16.59■□□□□ 0.25
ECM1-205ENST00000490346 CADPSQ9ULU8 1353 aa16.58■□□□□ 0.24
ECM1-205ENST00000490346 CCDC88BA6NC98 1476 aa16.56■□□□□ 0.24
ECM1-205ENST00000490346 ERCC6Q03468 1493 aa16.56■□□□□ 0.24
ECM1-205ENST00000490346 CFTRP13569 1480 aa16.49■□□□□ 0.23
ECM1-205ENST00000490346 PDS5BQ9NTI5 1447 aa16.49■□□□□ 0.23
ECM1-205ENST00000490346 KIF21AQ7Z4S6 1674 aa16.46■□□□□ 0.23
ECM1-205ENST00000490346 FANCD2Q9BXW9 1451 aa16.4■□□□□ 0.22
ECM1-205ENST00000490346 THOC2Q8NI27 1593 aaKnown RBP16.39■□□□□ 0.21
ECM1-205ENST00000490346 PRDM2Q13029 1718 aa16.39■□□□□ 0.21
ECM1-205ENST00000490346 CEP164Q9UPV0 1460 aa16.37■□□□□ 0.21
ECM1-205ENST00000490346 CUX2O14529 1486 aa16.34■□□□□ 0.21
ECM1-205ENST00000490346 MRC2Q9UBG0 1479 aa16.33■□□□□ 0.2
ECM1-205ENST00000490346 WDR62O43379 1518 aa16.27■□□□□ 0.2
ECM1-205ENST00000490346 URB2Q14146 1524 aaKnown RBP16.24■□□□□ 0.19
ECM1-205ENST00000490346 TOPBP1Q92547 1522 aa16.14■□□□□ 0.18
ECM1-205ENST00000490346 DNMBPQ6XZF7 1577 aa16.13■□□□□ 0.17
ECM1-205ENST00000490346 ABCC8Q09428 1581 aa16.12■□□□□ 0.17
ECM1-205ENST00000490346 CUX1P39880 1505 aa16.06■□□□□ 0.16
ECM1-205ENST00000490346 POLA1P09884 1462 aaPredicted RBP16.01■□□□□ 0.15
ECM1-205ENST00000490346 IFT140Q96RY7 1462 aa16.01■□□□□ 0.15
ECM1-205ENST00000490346 FGD5Q6ZNL6 1462 aa15.99■□□□□ 0.15
ECM1-205ENST00000490346 WRNQ14191 1432 aaPredicted RBP eCLIP15.97■□□□□ 0.15
ECM1-205ENST00000490346 ZNF608Q9ULD9 1512 aaPredicted RBP15.96■□□□□ 0.15
ECM1-205ENST00000490346 TARBP1Q13395 1621 aaKnown RBP15.96■□□□□ 0.15
ECM1-205ENST00000490346 RAD54L2Q9Y4B4 1467 aa15.96■□□□□ 0.14
ECM1-205ENST00000490346 SOGA1O94964 1423 aa15.94■□□□□ 0.14
ECM1-205ENST00000490346 SYNJ1O43426 1573 aa15.94■□□□□ 0.14
ECM1-205ENST00000490346 BIVM-ERCC5R4GMW8 1640 aa15.93■□□□□ 0.14
ECM1-205ENST00000490346 TOP2BQ02880 1626 aa15.92■□□□□ 0.14
ECM1-205ENST00000490346 EIF4G3O43432 1585 aaKnown RBP15.9■□□□□ 0.14
ECM1-205ENST00000490346 AQRO60306 1485 aaKnown RBP eCLIP15.88■□□□□ 0.13
ECM1-205ENST00000490346 WDR97A6NE52 1622 aa15.86■□□□□ 0.13
ECM1-205ENST00000490346 TDRD9Q8NDG6 1382 aaKnown RBP15.86■□□□□ 0.13
ECM1-205ENST00000490346 ABCA10Q8WWZ4 1543 aa15.83■□□□□ 0.12
ECM1-205ENST00000490346 ABCA5Q8WWZ7 1642 aa15.77■□□□□ 0.12
ECM1-205ENST00000490346 GAPVD1Q14C86 1478 aa15.77■□□□□ 0.11
ECM1-205ENST00000490346 DNAJC5Q9H3Z4 198 aa15.76■□□□□ 0.11
ECM1-205ENST00000490346 PBRM1Q86U86 1689 aa15.74■□□□□ 0.11
ECM1-205ENST00000490346 GRIN2BQ13224 1484 aa15.74■□□□□ 0.11
ECM1-205ENST00000490346 SNAPC4Q5SXM2 1469 aa15.73■□□□□ 0.11
ECM1-205ENST00000490346 CHD1O14646 1710 aa15.69■□□□□ 0.1
ECM1-205ENST00000490346 MAGI1Q96QZ7 1491 aaPredicted RBP15.69■□□□□ 0.1
ECM1-205ENST00000490346 FBLN2P98095 1184 aa15.68■□□□□ 0.1
ECM1-205ENST00000490346 OSCARQ8IYS5 282 aa15.68■□□□□ 0.1
ECM1-205ENST00000490346 TRIM41Q8WV44 630 aa15.64■□□□□ 0.09
ECM1-205ENST00000490346 SYNJ2O15056 1496 aa15.64■□□□□ 0.09
ECM1-205ENST00000490346 ERICH3Q5RHP9 1530 aa15.63■□□□□ 0.09
ECM1-205ENST00000490346 KIF27Q86VH2 1401 aa15.62■□□□□ 0.09
ECM1-205ENST00000490346 CHMP7Q8WUX9 453 aaPredicted RBP15.62■□□□□ 0.09
ECM1-205ENST00000490346 ADAMTS12P58397 1594 aa15.62■□□□□ 0.09
ECM1-205ENST00000490346 FHAD1B1AJZ9 1412 aa15.57■□□□□ 0.08
ECM1-205ENST00000490346 GRIN2AQ12879 1464 aa15.55■□□□□ 0.08
ECM1-205ENST00000490346 IGF1RP08069 1367 aa15.55■□□□□ 0.08
ECM1-205ENST00000490346 RUSC2Q8N2Y8 1516 aa15.53■□□□□ 0.08
ECM1-205ENST00000490346 CUL7Q14999 1698 aa15.51■□□□□ 0.07
ECM1-205ENST00000490346 CLASP1Q7Z460 1538 aa15.5■□□□□ 0.07
ECM1-205ENST00000490346 CHIC1Q5VXU3 224 aa15.5■□□□□ 0.07
ECM1-205ENST00000490346 CEP170Q5SW79 1584 aa15.48■□□□□ 0.07
ECM1-205ENST00000490346 NUP160Q12769 1436 aa15.47■□□□□ 0.07
ECM1-205ENST00000490346 CARMIL1Q5VZK9 1371 aa15.46■□□□□ 0.07
ECM1-205ENST00000490346 ARHGEF11O15085 1522 aa15.44■□□□□ 0.06
ECM1-205ENST00000490346 RIMBP3CA6NJZ7 1639 aa15.44■□□□□ 0.06
ECM1-205ENST00000490346 RIMBP3BA6NNM3 1639 aa15.44■□□□□ 0.06
ECM1-205ENST00000490346 RIMBP3Q9UFD9 1639 aa15.44■□□□□ 0.06
ECM1-205ENST00000490346 RAPGEF2Q9Y4G8 1499 aa15.38■□□□□ 0.05
ECM1-205ENST00000490346 EEA1Q15075 1411 aa15.35■□□□□ 0.05
ECM1-205ENST00000490346 SHROOM2Q13796 1616 aa15.35■□□□□ 0.05
Retrieved 100 of 20,778 RNA–protein pairs in 42.1 ms