RNA–Protein interactions for RNA: ENST00000490231.5

NUP58-213, Transcript of nucleoporin 58, humanhuman

TSL 4

Gene NUP58, Length 563 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP58-213ENST00000490231 NISCHQ9Y2I1 1504 aa39.31■■■■□ 3.88
NUP58-213ENST00000490231 CCDC180Q9P1Z9 1646 aa35.25■■■■□ 3.23
NUP58-213ENST00000490231 ABCC9O60706 1549 aa35.22■■■■□ 3.23
NUP58-213ENST00000490231 RB1CC1Q8TDY2 1594 aa33.56■■■□□ 2.96
NUP58-213ENST00000490231 NACADO15069 1562 aa33.35■■■□□ 2.93
NUP58-213ENST00000490231 DCAF8L2P0C7V8 631 aa33.12■■■□□ 2.89
NUP58-213ENST00000490231 DNAJC5BQ9UF47 199 aa33.02■■■□□ 2.88
NUP58-213ENST00000490231 MYO15BQ96JP2 1530 aa32.94■■■□□ 2.86
NUP58-213ENST00000490231 PABPN1Q86U42 306 aaKnown RBP eCLIP32.78■■■□□ 2.84
NUP58-213ENST00000490231 UNC13AQ9UPW8 1703 aa32.7■■■□□ 2.83
NUP58-213ENST00000490231 ZCCHC6Q5VYS8 1495 aaKnown RBP32.6■■■□□ 2.81
NUP58-213ENST00000490231 BICRAQ9NZM4 1560 aa32.56■■■□□ 2.8
NUP58-213ENST00000490231 DCAF1Q9Y4B6 1507 aa32.52■■■□□ 2.8
NUP58-213ENST00000490231 SHROOM4Q9ULL8 1493 aa32.22■■■□□ 2.75
NUP58-213ENST00000490231 SCRIBQ14160 1630 aa32.08■■■□□ 2.73
NUP58-213ENST00000490231 CC2D2AQ9P2K1 1620 aa31.81■■■□□ 2.68
NUP58-213ENST00000490231 EIF4G1Q04637 1599 aaKnown RBP31.77■■■□□ 2.68
NUP58-213ENST00000490231 CECR2Q9BXF3 1484 aa31.74■■■□□ 2.67
NUP58-213ENST00000490231 NCAPD3P42695 1498 aa30.82■■■□□ 2.52
NUP58-213ENST00000490231 ATAD2BQ9ULI0 1458 aa30.7■■■□□ 2.5
NUP58-213ENST00000490231 SMARCA4P51532 1647 aa30.64■■■□□ 2.5
NUP58-213ENST00000490231 SMARCA2P51531 1590 aa30.61■■■□□ 2.49
NUP58-213ENST00000490231 HMGXB3Q12766 1538 aa30.57■■■□□ 2.48
NUP58-213ENST00000490231 BAZ1AQ9NRL2 1556 aaPredicted RBP30.52■■■□□ 2.48
NUP58-213ENST00000490231 ERCC6Q03468 1493 aa30.42■■■□□ 2.46
NUP58-213ENST00000490231 CUX2O14529 1486 aa30.4■■■□□ 2.46
NUP58-213ENST00000490231 PEG3Q9GZU2 1588 aa30.39■■■□□ 2.46
NUP58-213ENST00000490231 BAZ1BQ9UIG0 1483 aaKnown RBP30.38■■■□□ 2.45
NUP58-213ENST00000490231 DNAJC5Q9H3Z4 198 aa30.35■■■□□ 2.45
NUP58-213ENST00000490231 MROH2BQ7Z745 1585 aa30.27■■■□□ 2.44
NUP58-213ENST00000490231 NESP48681 1621 aa30.25■■■□□ 2.43
NUP58-213ENST00000490231 LAMC3Q9Y6N6 1575 aa30.09■■■□□ 2.41
NUP58-213ENST00000490231 THOC2Q8NI27 1593 aaKnown RBP29.95■■■□□ 2.39
NUP58-213ENST00000490231 PDS5BQ9NTI5 1447 aa29.93■■■□□ 2.38
NUP58-213ENST00000490231 WIZO95785 1651 aa29.87■■■□□ 2.37
NUP58-213ENST00000490231 CADPSQ9ULU8 1353 aa29.87■■■□□ 2.37
NUP58-213ENST00000490231 KIF21AQ7Z4S6 1674 aa29.82■■■□□ 2.36
NUP58-213ENST00000490231 RSF1Q96T23 1441 aaPredicted RBP29.67■■■□□ 2.34
NUP58-213ENST00000490231 MRC2Q9UBG0 1479 aa29.65■■■□□ 2.34
NUP58-213ENST00000490231 WDR62O43379 1518 aa29.58■■■□□ 2.33
NUP58-213ENST00000490231 TOP2AP11388 1531 aaKnown RBP29.55■■■□□ 2.32
NUP58-213ENST00000490231 CEP164Q9UPV0 1460 aa29.54■■■□□ 2.32
NUP58-213ENST00000490231 CFTRP13569 1480 aa29.53■■■□□ 2.32
NUP58-213ENST00000490231 FANCD2Q9BXW9 1451 aa29.5■■■□□ 2.31
NUP58-213ENST00000490231 URB2Q14146 1524 aaKnown RBP29.25■■■□□ 2.27
NUP58-213ENST00000490231 CCDC88BA6NC98 1476 aa29.21■■■□□ 2.27
NUP58-213ENST00000490231 PRDM2Q13029 1718 aa29.14■■■□□ 2.25
NUP58-213ENST00000490231 OSCARQ8IYS5 282 aa29■■■□□ 2.23
NUP58-213ENST00000490231 TRIM41Q8WV44 630 aa28.97■■■□□ 2.23
NUP58-213ENST00000490231 IFT140Q96RY7 1462 aa28.96■■■□□ 2.23
NUP58-213ENST00000490231 TOPBP1Q92547 1522 aa28.94■■■□□ 2.22
NUP58-213ENST00000490231 ABCC8Q09428 1581 aa28.92■■■□□ 2.22
NUP58-213ENST00000490231 ZNF608Q9ULD9 1512 aaPredicted RBP28.87■■■□□ 2.21
NUP58-213ENST00000490231 DNMBPQ6XZF7 1577 aa28.84■■■□□ 2.21
NUP58-213ENST00000490231 EIF4G3O43432 1585 aaKnown RBP28.71■■■□□ 2.19
NUP58-213ENST00000490231 TARBP1Q13395 1621 aaKnown RBP28.68■■■□□ 2.18
NUP58-213ENST00000490231 POLA1P09884 1462 aaPredicted RBP28.66■■■□□ 2.18
NUP58-213ENST00000490231 AQRO60306 1485 aaKnown RBP eCLIP28.62■■■□□ 2.172e-6■■□□□ 12.6
NUP58-213ENST00000490231 RIMBP3CA6NJZ7 1639 aa28.58■■■□□ 2.17
NUP58-213ENST00000490231 RIMBP3BA6NNM3 1639 aa28.58■■■□□ 2.17
NUP58-213ENST00000490231 RIMBP3Q9UFD9 1639 aa28.58■■■□□ 2.17
NUP58-213ENST00000490231 RAD54L2Q9Y4B4 1467 aa28.53■■■□□ 2.16
NUP58-213ENST00000490231 SOGA1O94964 1423 aa28.52■■■□□ 2.16
NUP58-213ENST00000490231 ARHGEF11O15085 1522 aa28.52■■■□□ 2.16
NUP58-213ENST00000490231 FGD5Q6ZNL6 1462 aa28.46■■■□□ 2.15
NUP58-213ENST00000490231 TDRD9Q8NDG6 1382 aaKnown RBP28.45■■■□□ 2.14
NUP58-213ENST00000490231 CHD1O14646 1710 aa28.44■■■□□ 2.14
NUP58-213ENST00000490231 CUX1P39880 1505 aa28.43■■■□□ 2.14
NUP58-213ENST00000490231 WDR97A6NE52 1622 aa28.43■■■□□ 2.14
NUP58-213ENST00000490231 FBLN2P98095 1184 aa28.41■■■□□ 2.14
NUP58-213ENST00000490231 SNAPC4Q5SXM2 1469 aa28.34■■■□□ 2.13
NUP58-213ENST00000490231 SUPT5HO00267 1087 aaKnown RBP28.31■■■□□ 2.12
NUP58-213ENST00000490231 CYB5RLQ6IPT4 315 aa28.29■■■□□ 2.12
NUP58-213ENST00000490231 GRIN2BQ13224 1484 aa28.28■■■□□ 2.12
NUP58-213ENST00000490231 MAGI1Q96QZ7 1491 aaPredicted RBP28.28■■■□□ 2.12
NUP58-213ENST00000490231 ARAP1Q96P48 1450 aa28.24■■■□□ 2.11
NUP58-213ENST00000490231 CHMP7Q8WUX9 453 aaPredicted RBP28.24■■■□□ 2.11
NUP58-213ENST00000490231 CLASP1Q7Z460 1538 aa28.19■■■□□ 2.1
NUP58-213ENST00000490231 SYNJ2O15056 1496 aa28.19■■■□□ 2.1
NUP58-213ENST00000490231 SYNJ1O43426 1573 aa28.17■■■□□ 2.1
NUP58-213ENST00000490231 GAPVD1Q14C86 1478 aa28.17■■■□□ 2.1
NUP58-213ENST00000490231 ABCA10Q8WWZ4 1543 aa28.17■■■□□ 2.1
NUP58-213ENST00000490231 PBRM1Q86U86 1689 aa28.1■■■□□ 2.09
NUP58-213ENST00000490231 ABCA5Q8WWZ7 1642 aa28.1■■■□□ 2.09
NUP58-213ENST00000490231 WRNQ14191 1432 aaPredicted RBP eCLIP28.06■■■□□ 2.08
NUP58-213ENST00000490231 TOP2BQ02880 1626 aa28■■■□□ 2.07
NUP58-213ENST00000490231 BIVM-ERCC5R4GMW8 1640 aa27.99■■■□□ 2.07
NUP58-213ENST00000490231 TRHP20396 242 aaPredicted RBP27.96■■■□□ 2.07
NUP58-213ENST00000490231 GRIN2AQ12879 1464 aa27.91■■■□□ 2.06
NUP58-213ENST00000490231 ADAMTS12P58397 1594 aa27.88■■■□□ 2.05
NUP58-213ENST00000490231 FHAD1B1AJZ9 1412 aa27.84■■■□□ 2.05
NUP58-213ENST00000490231 NUP160Q12769 1436 aa27.84■■■□□ 2.05
NUP58-213ENST00000490231 ERICH3Q5RHP9 1530 aa27.82■■■□□ 2.04
NUP58-213ENST00000490231 CEP170Q5SW79 1584 aa27.79■■■□□ 2.04
NUP58-213ENST00000490231 ERCC6L2Q5T890 1561 aa27.71■■■□□ 2.03
NUP58-213ENST00000490231 SHROOM2Q13796 1616 aa27.68■■■□□ 2.02
NUP58-213ENST00000490231 PRG4Q92954 1404 aaPredicted RBP27.54■■■□□ 2
NUP58-213ENST00000490231 JPH4Q96JJ6 628 aa27.54■■■□□ 2
NUP58-213ENST00000490231 RUSC2Q8N2Y8 1516 aa27.49■■□□□ 1.99
NUP58-213ENST00000490231 KIF27Q86VH2 1401 aa27.47■■□□□ 1.99
Retrieved 100 of 20,778 RNA–protein pairs in 61.4 ms