RNA–Protein interactions for RNA: ENST00000490207.5

SMC4-222, Transcript of structural maintenance of chromosomes 4, humanhuman

TSL 5

Gene SMC4, Length 821 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4-222ENST00000490207 NISCHQ9Y2I1 1504 aa48.73■■■■■ 5.39
SMC4-222ENST00000490207 CCDC180Q9P1Z9 1646 aa43.6■■■■■ 4.57
SMC4-222ENST00000490207 ABCC9O60706 1549 aa42.89■■■■■ 4.46
SMC4-222ENST00000490207 RB1CC1Q8TDY2 1594 aa41.15■■■■■ 4.18
SMC4-222ENST00000490207 NACADO15069 1562 aa40.99■■■■■ 4.15
SMC4-222ENST00000490207 DCAF8L2P0C7V8 631 aa40.74■■■■■ 4.11
SMC4-222ENST00000490207 MYO15BQ96JP2 1530 aa40.61■■■■■ 4.09
SMC4-222ENST00000490207 ZCCHC6Q5VYS8 1495 aaKnown RBP40.56■■■■■ 4.08
SMC4-222ENST00000490207 DCAF1Q9Y4B6 1507 aa40.32■■■■■ 4.04
SMC4-222ENST00000490207 UNC13AQ9UPW8 1703 aa40.3■■■■■ 4.04
SMC4-222ENST00000490207 PABPN1Q86U42 306 aaKnown RBP eCLIP39.93■■■■□ 3.98
SMC4-222ENST00000490207 BICRAQ9NZM4 1560 aa39.91■■■■□ 3.98
SMC4-222ENST00000490207 SCRIBQ14160 1630 aa39.72■■■■□ 3.95
SMC4-222ENST00000490207 DNAJC5BQ9UF47 199 aa39.58■■■■□ 3.93
SMC4-222ENST00000490207 SHROOM4Q9ULL8 1493 aa39.47■■■■□ 3.91
SMC4-222ENST00000490207 EIF4G1Q04637 1599 aaKnown RBP38.89■■■■□ 3.82
SMC4-222ENST00000490207 CC2D2AQ9P2K1 1620 aa38.83■■■■□ 3.81
SMC4-222ENST00000490207 CECR2Q9BXF3 1484 aa38.58■■■■□ 3.77
SMC4-222ENST00000490207 SMARCA4P51532 1647 aa37.95■■■■□ 3.67
SMC4-222ENST00000490207 BAZ1AQ9NRL2 1556 aaPredicted RBP37.82■■■■□ 3.65
SMC4-222ENST00000490207 NCAPD3P42695 1498 aa37.77■■■■□ 3.64
SMC4-222ENST00000490207 ATAD2BQ9ULI0 1458 aa37.76■■■■□ 3.63
SMC4-222ENST00000490207 SMARCA2P51531 1590 aa37.75■■■■□ 3.63
SMC4-222ENST00000490207 HMGXB3Q12766 1538 aa37.64■■■■□ 3.62
SMC4-222ENST00000490207 PEG3Q9GZU2 1588 aa37.56■■■■□ 3.6
SMC4-222ENST00000490207 MROH2BQ7Z745 1585 aa37.55■■■■□ 3.6
SMC4-222ENST00000490207 BAZ1BQ9UIG0 1483 aaKnown RBP37.46■■■■□ 3.59
SMC4-222ENST00000490207 WIZO95785 1651 aa37.18■■■■□ 3.54
SMC4-222ENST00000490207 ERCC6Q03468 1493 aa37.01■■■■□ 3.52
SMC4-222ENST00000490207 NESP48681 1621 aa37.01■■■■□ 3.52
SMC4-222ENST00000490207 RSF1Q96T23 1441 aaPredicted RBP36.94■■■■□ 3.5
SMC4-222ENST00000490207 LAMC3Q9Y6N6 1575 aa36.91■■■■□ 3.5
SMC4-222ENST00000490207 CUX2O14529 1486 aa36.76■■■■□ 3.48
SMC4-222ENST00000490207 TOP2AP11388 1531 aaKnown RBP36.76■■■■□ 3.48
SMC4-222ENST00000490207 KIF21AQ7Z4S6 1674 aa36.67■■■■□ 3.46
SMC4-222ENST00000490207 CADPSQ9ULU8 1353 aa36.64■■■■□ 3.46
SMC4-222ENST00000490207 THOC2Q8NI27 1593 aaKnown RBP36.62■■■■□ 3.45
SMC4-222ENST00000490207 PDS5BQ9NTI5 1447 aa36.61■■■■□ 3.45
SMC4-222ENST00000490207 CFTRP13569 1480 aa36.37■■■■□ 3.41
SMC4-222ENST00000490207 MRC2Q9UBG0 1479 aa36.31■■■■□ 3.4
SMC4-222ENST00000490207 CEP164Q9UPV0 1460 aa36.29■■■■□ 3.4
SMC4-222ENST00000490207 FANCD2Q9BXW9 1451 aa36.27■■■■□ 3.4
SMC4-222ENST00000490207 CCDC88BA6NC98 1476 aa36.26■■■■□ 3.4
SMC4-222ENST00000490207 PRDM2Q13029 1718 aa36.26■■■■□ 3.4
SMC4-222ENST00000490207 WDR62O43379 1518 aa36.23■■■■□ 3.39
SMC4-222ENST00000490207 URB2Q14146 1524 aaKnown RBP35.94■■■■□ 3.34
SMC4-222ENST00000490207 DNAJC5Q9H3Z4 198 aa35.92■■■■□ 3.34
SMC4-222ENST00000490207 SUPT5HO00267 1087 aaKnown RBP35.69■■■■□ 3.3
SMC4-222ENST00000490207 TOPBP1Q92547 1522 aa35.67■■■■□ 3.3
SMC4-222ENST00000490207 DNMBPQ6XZF7 1577 aa35.63■■■■□ 3.29
SMC4-222ENST00000490207 ABCC8Q09428 1581 aa35.61■■■■□ 3.29
SMC4-222ENST00000490207 IFT140Q96RY7 1462 aa35.51■■■■□ 3.28
SMC4-222ENST00000490207 ZNF608Q9ULD9 1512 aaPredicted RBP35.37■■■■□ 3.25
SMC4-222ENST00000490207 TARBP1Q13395 1621 aaKnown RBP35.33■■■■□ 3.25
SMC4-222ENST00000490207 POLA1P09884 1462 aaPredicted RBP35.33■■■■□ 3.25
SMC4-222ENST00000490207 EIF4G3O43432 1585 aaKnown RBP35.32■■■■□ 3.24
SMC4-222ENST00000490207 CUX1P39880 1505 aa35.27■■■■□ 3.24
SMC4-222ENST00000490207 FGD5Q6ZNL6 1462 aa35.21■■■■□ 3.23
SMC4-222ENST00000490207 RAD54L2Q9Y4B4 1467 aa35.16■■■■□ 3.22
SMC4-222ENST00000490207 SOGA1O94964 1423 aa35.13■■■■□ 3.21
SMC4-222ENST00000490207 AQRO60306 1485 aaKnown RBP eCLIP35.1■■■■□ 3.212e-8■■■■■ 40.2
SMC4-222ENST00000490207 WDR97A6NE52 1622 aa35.06■■■■□ 3.2
SMC4-222ENST00000490207 OSCARQ8IYS5 282 aa35.05■■■■□ 3.2
SMC4-222ENST00000490207 CHD1O14646 1710 aa34.97■■■■□ 3.19
SMC4-222ENST00000490207 TDRD9Q8NDG6 1382 aaKnown RBP34.96■■■■□ 3.19
SMC4-222ENST00000490207 BIVM-ERCC5R4GMW8 1640 aa34.93■■■■□ 3.18
SMC4-222ENST00000490207 TOP2BQ02880 1626 aa34.89■■■■□ 3.18
SMC4-222ENST00000490207 WRNQ14191 1432 aaPredicted RBP eCLIP34.88■■■■□ 3.17
SMC4-222ENST00000490207 SYNJ1O43426 1573 aa34.87■■■■□ 3.17
SMC4-222ENST00000490207 PBRM1Q86U86 1689 aa34.84■■■■□ 3.17
SMC4-222ENST00000490207 SNAPC4Q5SXM2 1469 aa34.84■■■■□ 3.17
SMC4-222ENST00000490207 ABCA10Q8WWZ4 1543 aa34.83■■■■□ 3.17
SMC4-222ENST00000490207 GRIN2BQ13224 1484 aa34.8■■■■□ 3.16
SMC4-222ENST00000490207 ABCA5Q8WWZ7 1642 aa34.8■■■■□ 3.16
SMC4-222ENST00000490207 MAGI1Q96QZ7 1491 aaPredicted RBP34.77■■■■□ 3.16
SMC4-222ENST00000490207 GAPVD1Q14C86 1478 aa34.76■■■■□ 3.15
SMC4-222ENST00000490207 FBLN2P98095 1184 aa34.71■■■■□ 3.15
SMC4-222ENST00000490207 RIMBP3CA6NJZ7 1639 aa34.69■■■■□ 3.14
SMC4-222ENST00000490207 RIMBP3BA6NNM3 1639 aa34.69■■■■□ 3.14
SMC4-222ENST00000490207 RIMBP3Q9UFD9 1639 aa34.69■■■■□ 3.14
SMC4-222ENST00000490207 TRIM41Q8WV44 630 aa34.64■■■■□ 3.14
SMC4-222ENST00000490207 SYNJ2O15056 1496 aa34.63■■■■□ 3.13
SMC4-222ENST00000490207 ARHGEF11O15085 1522 aa34.61■■■■□ 3.13
SMC4-222ENST00000490207 CHMP7Q8WUX9 453 aaPredicted RBP34.56■■■■□ 3.12
SMC4-222ENST00000490207 CLASP1Q7Z460 1538 aa34.52■■■■□ 3.12
SMC4-222ENST00000490207 ADAMTS12P58397 1594 aa34.5■■■■□ 3.11
SMC4-222ENST00000490207 ERICH3Q5RHP9 1530 aa34.43■■■■□ 3.1
SMC4-222ENST00000490207 GRIN2AQ12879 1464 aa34.37■■■■□ 3.09
SMC4-222ENST00000490207 FHAD1B1AJZ9 1412 aa34.32■■■■□ 3.08
SMC4-222ENST00000490207 ARAP1Q96P48 1450 aa34.31■■■■□ 3.08
SMC4-222ENST00000490207 CEP170Q5SW79 1584 aa34.25■■■■□ 3.07
SMC4-222ENST00000490207 NUP160Q12769 1436 aa34.21■■■■□ 3.07
SMC4-222ENST00000490207 CYB5RLQ6IPT4 315 aa34.19■■■■□ 3.06
SMC4-222ENST00000490207 KIF27Q86VH2 1401 aa34.16■■■■□ 3.06
SMC4-222ENST00000490207 CUL7Q14999 1698 aa34.1■■■■□ 3.05
SMC4-222ENST00000490207 SHROOM2Q13796 1616 aa34.07■■■■□ 3.04
SMC4-222ENST00000490207 IGF1RP08069 1367 aa34.01■■■■□ 3.04
SMC4-222ENST00000490207 RUSC2Q8N2Y8 1516 aa34■■■■□ 3.03
SMC4-222ENST00000490207 ERCC6L2Q5T890 1561 aa34■■■■□ 3.03
SMC4-222ENST00000490207 CARMIL1Q5VZK9 1371 aa33.83■■■■□ 3.01
Retrieved 100 of 20,778 RNA–protein pairs in 12.4 ms