RNA–Protein interactions for RNA: ENST00000489979.1

VARS-227, Transcript of valyl-tRNA synthetase, humanhuman

TSL 3

Gene VARS, Length 658 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VARS-227ENST00000489979 NISCHQ9Y2I1 1504 aa35.47■■■■□ 3.27
VARS-227ENST00000489979 ABCC9O60706 1549 aa32.3■■■□□ 2.76
VARS-227ENST00000489979 CCDC180Q9P1Z9 1646 aa31.95■■■□□ 2.71
VARS-227ENST00000489979 DNAJC5BQ9UF47 199 aa30.59■■■□□ 2.49
VARS-227ENST00000489979 RB1CC1Q8TDY2 1594 aa30.58■■■□□ 2.49
VARS-227ENST00000489979 NACADO15069 1562 aa30.29■■■□□ 2.44
VARS-227ENST00000489979 DCAF8L2P0C7V8 631 aa30.13■■■□□ 2.41
VARS-227ENST00000489979 PABPN1Q86U42 306 aaKnown RBP eCLIP30.04■■■□□ 2.4
VARS-227ENST00000489979 UNC13AQ9UPW8 1703 aa29.91■■■□□ 2.38
VARS-227ENST00000489979 MYO15BQ96JP2 1530 aa29.74■■■□□ 2.35
VARS-227ENST00000489979 BICRAQ9NZM4 1560 aa29.71■■■□□ 2.35
VARS-227ENST00000489979 ZCCHC6Q5VYS8 1495 aaKnown RBP29.33■■■□□ 2.29
VARS-227ENST00000489979 DCAF1Q9Y4B6 1507 aa29.26■■■□□ 2.27
VARS-227ENST00000489979 SHROOM4Q9ULL8 1493 aa29.23■■■□□ 2.27
VARS-227ENST00000489979 CC2D2AQ9P2K1 1620 aa29.16■■■□□ 2.26
VARS-227ENST00000489979 SCRIBQ14160 1630 aa29.13■■■□□ 2.25
VARS-227ENST00000489979 CECR2Q9BXF3 1484 aa29.11■■■□□ 2.25
VARS-227ENST00000489979 EIF4G1Q04637 1599 aaKnown RBP29.01■■■□□ 2.23
VARS-227ENST00000489979 DNAJC5Q9H3Z4 198 aa28.3■■■□□ 2.12
VARS-227ENST00000489979 NCAPD3P42695 1498 aa27.97■■■□□ 2.07
VARS-227ENST00000489979 CUX2O14529 1486 aa27.94■■■□□ 2.06
VARS-227ENST00000489979 ERCC6Q03468 1493 aa27.9■■■□□ 2.06
VARS-227ENST00000489979 ATAD2BQ9ULI0 1458 aa27.85■■■□□ 2.05
VARS-227ENST00000489979 SMARCA4P51532 1647 aa27.74■■■□□ 2.03
VARS-227ENST00000489979 SMARCA2P51531 1590 aa27.74■■■□□ 2.03
VARS-227ENST00000489979 HMGXB3Q12766 1538 aa27.72■■■□□ 2.03
VARS-227ENST00000489979 NESP48681 1621 aa27.66■■■□□ 2.02
VARS-227ENST00000489979 BAZ1BQ9UIG0 1483 aaKnown RBP27.57■■■□□ 2
VARS-227ENST00000489979 BAZ1AQ9NRL2 1556 aaPredicted RBP27.55■■■□□ 2
VARS-227ENST00000489979 PEG3Q9GZU2 1588 aa27.46■■□□□ 1.99
VARS-227ENST00000489979 THOC2Q8NI27 1593 aaKnown RBP27.43■■□□□ 1.98
VARS-227ENST00000489979 LAMC3Q9Y6N6 1575 aa27.39■■□□□ 1.97
VARS-227ENST00000489979 MROH2BQ7Z745 1585 aa27.35■■□□□ 1.97
VARS-227ENST00000489979 KIF21AQ7Z4S6 1674 aa27.29■■□□□ 1.96
VARS-227ENST00000489979 PDS5BQ9NTI5 1447 aa27.24■■□□□ 1.95
VARS-227ENST00000489979 CADPSQ9ULU8 1353 aa27.11■■□□□ 1.93
VARS-227ENST00000489979 MRC2Q9UBG0 1479 aa27.04■■□□□ 1.92
VARS-227ENST00000489979 WIZO95785 1651 aa27.01■■□□□ 1.91
VARS-227ENST00000489979 WDR62O43379 1518 aa26.97■■□□□ 1.91
VARS-227ENST00000489979 TRIM41Q8WV44 630 aa26.97■■□□□ 1.91
VARS-227ENST00000489979 CEP164Q9UPV0 1460 aa26.87■■□□□ 1.89
VARS-227ENST00000489979 FANCD2Q9BXW9 1451 aa26.81■■□□□ 1.88
VARS-227ENST00000489979 CFTRP13569 1480 aa26.74■■□□□ 1.87
VARS-227ENST00000489979 RSF1Q96T23 1441 aaPredicted RBP26.65■■□□□ 1.86
VARS-227ENST00000489979 OSCARQ8IYS5 282 aa26.63■■□□□ 1.85
VARS-227ENST00000489979 TOP2AP11388 1531 aaKnown RBP26.63■■□□□ 1.85
VARS-227ENST00000489979 URB2Q14146 1524 aaKnown RBP26.61■■□□□ 1.85
VARS-227ENST00000489979 PRDM2Q13029 1718 aa26.45■■□□□ 1.83
VARS-227ENST00000489979 ZNF608Q9ULD9 1512 aaPredicted RBP26.34■■□□□ 1.81
VARS-227ENST00000489979 CCDC88BA6NC98 1476 aa26.34■■□□□ 1.81
VARS-227ENST00000489979 IFT140Q96RY7 1462 aa26.34■■□□□ 1.81
VARS-227ENST00000489979 RIMBP3CA6NJZ7 1639 aa26.32■■□□□ 1.8
VARS-227ENST00000489979 RIMBP3BA6NNM3 1639 aa26.32■■□□□ 1.8
VARS-227ENST00000489979 RIMBP3Q9UFD9 1639 aa26.32■■□□□ 1.8
VARS-227ENST00000489979 TOPBP1Q92547 1522 aa26.27■■□□□ 1.8
VARS-227ENST00000489979 ARHGEF11O15085 1522 aa26.19■■□□□ 1.78
VARS-227ENST00000489979 EIF4G3O43432 1585 aaKnown RBP26.17■■□□□ 1.78
VARS-227ENST00000489979 ABCC8Q09428 1581 aa26.17■■□□□ 1.78
VARS-227ENST00000489979 DNMBPQ6XZF7 1577 aa26.14■■□□□ 1.78
VARS-227ENST00000489979 AQRO60306 1485 aaKnown RBP eCLIP26.07■■□□□ 1.761e-6■■■■□ 22.8
VARS-227ENST00000489979 TARBP1Q13395 1621 aaKnown RBP26.06■■□□□ 1.76
VARS-227ENST00000489979 CHD1O14646 1710 aa26.05■■□□□ 1.76
VARS-227ENST00000489979 CYB5RLQ6IPT4 315 aa26.05■■□□□ 1.76
VARS-227ENST00000489979 POLA1P09884 1462 aaPredicted RBP25.98■■□□□ 1.75
VARS-227ENST00000489979 FBLN2P98095 1184 aa25.97■■□□□ 1.75
VARS-227ENST00000489979 ARAP1Q96P48 1450 aa25.92■■□□□ 1.74
VARS-227ENST00000489979 RAD54L2Q9Y4B4 1467 aa25.91■■□□□ 1.74
VARS-227ENST00000489979 TDRD9Q8NDG6 1382 aaKnown RBP25.86■■□□□ 1.73
VARS-227ENST00000489979 TRHP20396 242 aaPredicted RBP25.86■■□□□ 1.73
VARS-227ENST00000489979 SOGA1O94964 1423 aa25.86■■□□□ 1.73
VARS-227ENST00000489979 SNAPC4Q5SXM2 1469 aa25.79■■□□□ 1.72
VARS-227ENST00000489979 FGD5Q6ZNL6 1462 aa25.78■■□□□ 1.72
VARS-227ENST00000489979 WDR97A6NE52 1622 aa25.74■■□□□ 1.71
VARS-227ENST00000489979 CLASP1Q7Z460 1538 aa25.73■■□□□ 1.71
VARS-227ENST00000489979 CHMP7Q8WUX9 453 aaPredicted RBP25.72■■□□□ 1.71
VARS-227ENST00000489979 CUX1P39880 1505 aa25.71■■□□□ 1.71
VARS-227ENST00000489979 MAGI1Q96QZ7 1491 aaPredicted RBP25.68■■□□□ 1.7
VARS-227ENST00000489979 SYNJ1O43426 1573 aa25.68■■□□□ 1.7
VARS-227ENST00000489979 GRIN2BQ13224 1484 aa25.66■■□□□ 1.7
VARS-227ENST00000489979 SYNJ2O15056 1496 aa25.61■■□□□ 1.69
VARS-227ENST00000489979 PBRM1Q86U86 1689 aa25.55■■□□□ 1.68
VARS-227ENST00000489979 GAPVD1Q14C86 1478 aa25.54■■□□□ 1.68
VARS-227ENST00000489979 ABCA10Q8WWZ4 1543 aa25.45■■□□□ 1.66
VARS-227ENST00000489979 ABCA5Q8WWZ7 1642 aa25.45■■□□□ 1.66
VARS-227ENST00000489979 GRIN2AQ12879 1464 aa25.34■■□□□ 1.65
VARS-227ENST00000489979 ERCC6L2Q5T890 1561 aa25.33■■□□□ 1.65
VARS-227ENST00000489979 AEBP2Q6ZN18 517 aaPredicted RBP25.33■■□□□ 1.65
VARS-227ENST00000489979 WRNQ14191 1432 aaPredicted RBP eCLIP25.29■■□□□ 1.64
VARS-227ENST00000489979 ADAMTS12P58397 1594 aa25.28■■□□□ 1.64
VARS-227ENST00000489979 SUPT5HO00267 1087 aaKnown RBP25.28■■□□□ 1.64
VARS-227ENST00000489979 NUP160Q12769 1436 aa25.27■■□□□ 1.64
VARS-227ENST00000489979 CEP170Q5SW79 1584 aa25.27■■□□□ 1.64
VARS-227ENST00000489979 BIVM-ERCC5R4GMW8 1640 aa25.2■■□□□ 1.62
VARS-227ENST00000489979 FHAD1B1AJZ9 1412 aa25.2■■□□□ 1.62
VARS-227ENST00000489979 TOP2BQ02880 1626 aa25.19■■□□□ 1.62
VARS-227ENST00000489979 SHROOM2Q13796 1616 aa25.18■■□□□ 1.62
VARS-227ENST00000489979 ERICH3Q5RHP9 1530 aa25.12■■□□□ 1.61
VARS-227ENST00000489979 PRG4Q92954 1404 aaPredicted RBP25.05■■□□□ 1.6
VARS-227ENST00000489979 KIF13AQ9H1H9 1805 aa25.04■■□□□ 1.6
VARS-227ENST00000489979 JPH4Q96JJ6 628 aa25.02■■□□□ 1.6
Retrieved 100 of 20,778 RNA–protein pairs in 52.2 ms