RNA–Protein interactions for RNA: ENST00000489912.1

LSM10-203, Transcript of LSM10, U7 small nuclear RNA associated, humanhuman

TSL 3

Gene LSM10, Length 401 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM10-203ENST00000489912 NISCHQ9Y2I1 1504 aa55.17■■■■■ 6.42
LSM10-203ENST00000489912 CCDC180Q9P1Z9 1646 aa49.08■■■■■ 5.45
LSM10-203ENST00000489912 ABCC9O60706 1549 aa48.17■■■■■ 5.3
LSM10-203ENST00000489912 DCAF8L2P0C7V8 631 aa46.31■■■■■ 5
LSM10-203ENST00000489912 RB1CC1Q8TDY2 1594 aa46.24■■■■■ 4.99
LSM10-203ENST00000489912 NACADO15069 1562 aa46.13■■■■■ 4.97
LSM10-203ENST00000489912 ZCCHC6Q5VYS8 1495 aaKnown RBP45.93■■■■■ 4.94
LSM10-203ENST00000489912 MYO15BQ96JP2 1530 aa45.72■■■■■ 4.91
LSM10-203ENST00000489912 DCAF1Q9Y4B6 1507 aa45.55■■■■■ 4.88
LSM10-203ENST00000489912 UNC13AQ9UPW8 1703 aa45.3■■■■■ 4.84
LSM10-203ENST00000489912 PABPN1Q86U42 306 aaKnown RBP eCLIP45.03■■■■■ 4.8
LSM10-203ENST00000489912 SCRIBQ14160 1630 aa44.91■■■■■ 4.78
LSM10-203ENST00000489912 BICRAQ9NZM4 1560 aa44.84■■■■■ 4.77
LSM10-203ENST00000489912 SHROOM4Q9ULL8 1493 aa44.22■■■■■ 4.67
LSM10-203ENST00000489912 DNAJC5BQ9UF47 199 aa44.21■■■■■ 4.67
LSM10-203ENST00000489912 EIF4G1Q04637 1599 aaKnown RBP43.67■■■■■ 4.58
LSM10-203ENST00000489912 CC2D2AQ9P2K1 1620 aa43.55■■■■■ 4.56
LSM10-203ENST00000489912 CECR2Q9BXF3 1484 aa43.24■■■■■ 4.51
LSM10-203ENST00000489912 SMARCA4P51532 1647 aa42.87■■■■■ 4.45
LSM10-203ENST00000489912 BAZ1AQ9NRL2 1556 aaPredicted RBP42.77■■■■■ 4.44
LSM10-203ENST00000489912 ATAD2BQ9ULI0 1458 aa42.6■■■■■ 4.41
LSM10-203ENST00000489912 MROH2BQ7Z745 1585 aa42.56■■■■■ 4.4
LSM10-203ENST00000489912 SMARCA2P51531 1590 aa42.55■■■■■ 4.4
LSM10-203ENST00000489912 NCAPD3P42695 1498 aa42.52■■■■■ 4.4
LSM10-203ENST00000489912 HMGXB3Q12766 1538 aa42.35■■■■■ 4.37
LSM10-203ENST00000489912 PEG3Q9GZU2 1588 aa42.35■■■■■ 4.37
LSM10-203ENST00000489912 BAZ1BQ9UIG0 1483 aaKnown RBP42.3■■■■■ 4.36
LSM10-203ENST00000489912 WIZO95785 1651 aa42.17■■■■■ 4.34
LSM10-203ENST00000489912 RSF1Q96T23 1441 aaPredicted RBP42.02■■■■■ 4.32
LSM10-203ENST00000489912 NESP48681 1621 aa41.67■■■■■ 4.26
LSM10-203ENST00000489912 TOP2AP11388 1531 aaKnown RBP41.64■■■■■ 4.26
LSM10-203ENST00000489912 ERCC6Q03468 1493 aa41.53■■■■■ 4.24
LSM10-203ENST00000489912 LAMC3Q9Y6N6 1575 aa41.47■■■■■ 4.23
LSM10-203ENST00000489912 CADPSQ9ULU8 1353 aa41.33■■■■■ 4.21
LSM10-203ENST00000489912 KIF21AQ7Z4S6 1674 aa41.22■■■■■ 4.19
LSM10-203ENST00000489912 PDS5BQ9NTI5 1447 aa41.19■■■■■ 4.18
LSM10-203ENST00000489912 CCDC88BA6NC98 1476 aa41.15■■■■■ 4.18
LSM10-203ENST00000489912 SUPT5HO00267 1087 aaKnown RBP41.08■■■■■ 4.17
LSM10-203ENST00000489912 CFTRP13569 1480 aa41.06■■■■■ 4.16
LSM10-203ENST00000489912 THOC2Q8NI27 1593 aaKnown RBP41.01■■■■■ 4.16
LSM10-203ENST00000489912 CUX2O14529 1486 aa40.99■■■■■ 4.15
LSM10-203ENST00000489912 FANCD2Q9BXW9 1451 aa40.9■■■■■ 4.14
LSM10-203ENST00000489912 PRDM2Q13029 1718 aa40.87■■■■■ 4.13
LSM10-203ENST00000489912 CEP164Q9UPV0 1460 aa40.86■■■■■ 4.13
LSM10-203ENST00000489912 MRC2Q9UBG0 1479 aa40.8■■■■■ 4.12
LSM10-203ENST00000489912 WDR62O43379 1518 aa40.65■■■■■ 4.1
LSM10-203ENST00000489912 URB2Q14146 1524 aaKnown RBP40.51■■■■■ 4.08
LSM10-203ENST00000489912 TOPBP1Q92547 1522 aa40.25■■■■■ 4.03
LSM10-203ENST00000489912 DNMBPQ6XZF7 1577 aa40.19■■■■■ 4.02
LSM10-203ENST00000489912 ABCC8Q09428 1581 aa40.16■■■■■ 4.02
LSM10-203ENST00000489912 IFT140Q96RY7 1462 aa39.97■■■■□ 3.99
LSM10-203ENST00000489912 CUX1P39880 1505 aa39.94■■■■□ 3.98
LSM10-203ENST00000489912 POLA1P09884 1462 aaPredicted RBP39.89■■■■□ 3.98
LSM10-203ENST00000489912 ZNF608Q9ULD9 1512 aaPredicted RBP39.86■■■■□ 3.97
LSM10-203ENST00000489912 FGD5Q6ZNL6 1462 aa39.81■■■■□ 3.96
LSM10-203ENST00000489912 TARBP1Q13395 1621 aaKnown RBP39.8■■■■□ 3.96
LSM10-203ENST00000489912 DNAJC5Q9H3Z4 198 aa39.8■■■■□ 3.96
LSM10-203ENST00000489912 RAD54L2Q9Y4B4 1467 aa39.78■■■■□ 3.96
LSM10-203ENST00000489912 SOGA1O94964 1423 aa39.74■■■■□ 3.95
LSM10-203ENST00000489912 EIF4G3O43432 1585 aaKnown RBP39.71■■■■□ 3.95
LSM10-203ENST00000489912 WRNQ14191 1432 aaPredicted RBP eCLIP39.65■■■■□ 3.94
LSM10-203ENST00000489912 AQRO60306 1485 aaKnown RBP eCLIP39.62■■■■□ 3.934e-8■■■■□ 22.5
LSM10-203ENST00000489912 SYNJ1O43426 1573 aa39.6■■■■□ 3.93
LSM10-203ENST00000489912 BIVM-ERCC5R4GMW8 1640 aa39.57■■■■□ 3.92
LSM10-203ENST00000489912 TOP2BQ02880 1626 aa39.56■■■■□ 3.92
LSM10-203ENST00000489912 TDRD9Q8NDG6 1382 aaKnown RBP39.56■■■■□ 3.92
LSM10-203ENST00000489912 WDR97A6NE52 1622 aa39.49■■■■□ 3.91
LSM10-203ENST00000489912 ABCA10Q8WWZ4 1543 aa39.37■■■■□ 3.89
LSM10-203ENST00000489912 OSCARQ8IYS5 282 aa39.33■■■■□ 3.89
LSM10-203ENST00000489912 PBRM1Q86U86 1689 aa39.29■■■■□ 3.88
LSM10-203ENST00000489912 CHD1O14646 1710 aa39.28■■■■□ 3.88
LSM10-203ENST00000489912 GAPVD1Q14C86 1478 aa39.28■■■■□ 3.88
LSM10-203ENST00000489912 GRIN2BQ13224 1484 aa39.26■■■■□ 3.88
LSM10-203ENST00000489912 SNAPC4Q5SXM2 1469 aa39.26■■■■□ 3.88
LSM10-203ENST00000489912 ABCA5Q8WWZ7 1642 aa39.25■■■■□ 3.87
LSM10-203ENST00000489912 FBLN2P98095 1184 aa39.25■■■■□ 3.87
LSM10-203ENST00000489912 MAGI1Q96QZ7 1491 aaPredicted RBP39.14■■■■□ 3.86
LSM10-203ENST00000489912 CHMP7Q8WUX9 453 aaPredicted RBP39.05■■■■□ 3.84
LSM10-203ENST00000489912 SYNJ2O15056 1496 aa39.01■■■■□ 3.84
LSM10-203ENST00000489912 ADAMTS12P58397 1594 aa38.91■■■■□ 3.82
LSM10-203ENST00000489912 ERICH3Q5RHP9 1530 aa38.9■■■■□ 3.82
LSM10-203ENST00000489912 KIF27Q86VH2 1401 aa38.81■■■■□ 3.8
LSM10-203ENST00000489912 FHAD1B1AJZ9 1412 aa38.79■■■■□ 3.8
LSM10-203ENST00000489912 GRIN2AQ12879 1464 aa38.77■■■■□ 3.8
LSM10-203ENST00000489912 RIMBP3CA6NJZ7 1639 aa38.77■■■■□ 3.8
LSM10-203ENST00000489912 RIMBP3BA6NNM3 1639 aa38.77■■■■□ 3.8
LSM10-203ENST00000489912 RIMBP3Q9UFD9 1639 aa38.77■■■■□ 3.8
LSM10-203ENST00000489912 CLASP1Q7Z460 1538 aa38.73■■■■□ 3.79
LSM10-203ENST00000489912 TRIM41Q8WV44 630 aa38.73■■■■□ 3.79
LSM10-203ENST00000489912 ARHGEF11O15085 1522 aa38.72■■■■□ 3.79
LSM10-203ENST00000489912 IGF1RP08069 1367 aa38.64■■■■□ 3.78
LSM10-203ENST00000489912 CEP170Q5SW79 1584 aa38.61■■■■□ 3.77
LSM10-203ENST00000489912 CUL7Q14999 1698 aa38.58■■■■□ 3.77
LSM10-203ENST00000489912 NUP160Q12769 1436 aa38.55■■■■□ 3.76
LSM10-203ENST00000489912 RUSC2Q8N2Y8 1516 aa38.52■■■■□ 3.76
LSM10-203ENST00000489912 CARMIL1Q5VZK9 1371 aa38.44■■■■□ 3.74
LSM10-203ENST00000489912 CYB5RLQ6IPT4 315 aa38.41■■■■□ 3.74
LSM10-203ENST00000489912 ARAP1Q96P48 1450 aa38.41■■■■□ 3.74
LSM10-203ENST00000489912 SHROOM2Q13796 1616 aa38.3■■■■□ 3.72
LSM10-203ENST00000489912 ERCC6L2Q5T890 1561 aa38.28■■■■□ 3.72
Retrieved 100 of 20,778 RNA–protein pairs in 51.6 ms