RNA–Protein interactions for RNA: ENST00000489861.2

COL9A1-209, Transcript of collagen type IX alpha 1 chain, humanhuman

TSL 3

Gene COL9A1, Length 243 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A1-209ENST00000489861 NISCHQ9Y2I1 1504 aa19.31■□□□□ 0.68
COL9A1-209ENST00000489861 ABCC9O60706 1549 aa18.42■□□□□ 0.54
COL9A1-209ENST00000489861 DNAJC5BQ9UF47 199 aa18.04■□□□□ 0.48
COL9A1-209ENST00000489861 CCDC180Q9P1Z9 1646 aa17.65■□□□□ 0.42
COL9A1-209ENST00000489861 RB1CC1Q8TDY2 1594 aa17.15■□□□□ 0.34
COL9A1-209ENST00000489861 DNAJC5Q9H3Z4 198 aa17.05■□□□□ 0.32
COL9A1-209ENST00000489861 PABPN1Q86U42 306 aaKnown RBP eCLIP17.04■□□□□ 0.32
COL9A1-209ENST00000489861 UNC13AQ9UPW8 1703 aa16.9■□□□□ 0.3
COL9A1-209ENST00000489861 NACADO15069 1562 aa16.85■□□□□ 0.29
COL9A1-209ENST00000489861 BICRAQ9NZM4 1560 aa16.77■□□□□ 0.28
COL9A1-209ENST00000489861 CECR2Q9BXF3 1484 aa16.66■□□□□ 0.26
COL9A1-209ENST00000489861 CC2D2AQ9P2K1 1620 aa16.61■□□□□ 0.25
COL9A1-209ENST00000489861 DCAF8L2P0C7V8 631 aa16.61■□□□□ 0.25
COL9A1-209ENST00000489861 EIF4G1Q04637 1599 aaKnown RBP16.37■□□□□ 0.21
COL9A1-209ENST00000489861 MYO15BQ96JP2 1530 aa16.35■□□□□ 0.21
COL9A1-209ENST00000489861 SHROOM4Q9ULL8 1493 aa16.33■□□□□ 0.2
COL9A1-209ENST00000489861 AEBP2Q6ZN18 517 aaPredicted RBP16.25■□□□□ 0.19
COL9A1-209ENST00000489861 CUX2O14529 1486 aa16.14■□□□□ 0.17
COL9A1-209ENST00000489861 SCRIBQ14160 1630 aa16.06■□□□□ 0.16
COL9A1-209ENST00000489861 TRIM41Q8WV44 630 aa15.97■□□□□ 0.15
COL9A1-209ENST00000489861 ERCC6Q03468 1493 aa15.91■□□□□ 0.14
COL9A1-209ENST00000489861 DCAF1Q9Y4B6 1507 aa15.87■□□□□ 0.13
COL9A1-209ENST00000489861 ZCCHC6Q5VYS8 1495 aaKnown RBP15.84■□□□□ 0.13
COL9A1-209ENST00000489861 NESP48681 1621 aa15.65■□□□□ 0.1
COL9A1-209ENST00000489861 THOC2Q8NI27 1593 aaKnown RBP15.62■□□□□ 0.09
COL9A1-209ENST00000489861 NCAPD3P42695 1498 aa15.58■□□□□ 0.08
COL9A1-209ENST00000489861 SMARCA2P51531 1590 aa15.45■□□□□ 0.06
COL9A1-209ENST00000489861 ATAD2BQ9ULI0 1458 aa15.44■□□□□ 0.06
COL9A1-209ENST00000489861 KIF21AQ7Z4S6 1674 aa15.42■□□□□ 0.06
COL9A1-209ENST00000489861 HMGXB3Q12766 1538 aa15.38■□□□□ 0.05
COL9A1-209ENST00000489861 BAZ1AQ9NRL2 1556 aaPredicted RBP15.34■□□□□ 0.05
COL9A1-209ENST00000489861 LAMC3Q9Y6N6 1575 aa15.33■□□□□ 0.05
COL9A1-209ENST00000489861 OSCARQ8IYS5 282 aa15.27■□□□□ 0.04
COL9A1-209ENST00000489861 PDS5BQ9NTI5 1447 aa15.25■□□□□ 0.03
COL9A1-209ENST00000489861 SMARCA4P51532 1647 aa15.25■□□□□ 0.03
COL9A1-209ENST00000489861 RIMBP3CA6NJZ7 1639 aa15.23■□□□□ 0.03
COL9A1-209ENST00000489861 RIMBP3BA6NNM3 1639 aa15.23■□□□□ 0.03
COL9A1-209ENST00000489861 RIMBP3Q9UFD9 1639 aa15.23■□□□□ 0.03
COL9A1-209ENST00000489861 BAZ1BQ9UIG0 1483 aaKnown RBP15.21■□□□□ 0.03
COL9A1-209ENST00000489861 WDR62O43379 1518 aa15.2■□□□□ 0.02
COL9A1-209ENST00000489861 MRC2Q9UBG0 1479 aa15.19■□□□□ 0.02
COL9A1-209ENST00000489861 CHIC1Q5VXU3 224 aa15.1■□□□□ 0.01
COL9A1-209ENST00000489861 PEG3Q9GZU2 1588 aa15.08■□□□□ 0
COL9A1-209ENST00000489861 ARHGEF11O15085 1522 aa15.07■□□□□ 0
COL9A1-209ENST00000489861 CADPSQ9ULU8 1353 aa15.06■□□□□ 0
COL9A1-209ENST00000489861 TRHP20396 242 aaPredicted RBP15.05■□□□□ -0
COL9A1-209ENST00000489861 CYB5RLQ6IPT4 315 aa15□□□□□ -0.01
COL9A1-209ENST00000489861 CEP164Q9UPV0 1460 aa14.96□□□□□ -0.01
COL9A1-209ENST00000489861 MROH2BQ7Z745 1585 aa14.9□□□□□ -0.02
COL9A1-209ENST00000489861 FANCD2Q9BXW9 1451 aa14.9□□□□□ -0.02
COL9A1-209ENST00000489861 ARAP1Q96P48 1450 aa14.89□□□□□ -0.03
COL9A1-209ENST00000489861 URB2Q14146 1524 aaKnown RBP14.87□□□□□ -0.03
COL9A1-209ENST00000489861 ZNF608Q9ULD9 1512 aaPredicted RBP14.82□□□□□ -0.04
COL9A1-209ENST00000489861 CHD1O14646 1710 aa14.75□□□□□ -0.05
COL9A1-209ENST00000489861 CFTRP13569 1480 aa14.74□□□□□ -0.05
COL9A1-209ENST00000489861 WIZO95785 1651 aa14.71□□□□□ -0.06
COL9A1-209ENST00000489861 ILDR1Q86SU0 546 aaPredicted RBP14.7□□□□□ -0.06
COL9A1-209ENST00000489861 RSF1Q96T23 1441 aaPredicted RBP14.69□□□□□ -0.06
COL9A1-209ENST00000489861 IFT140Q96RY7 1462 aa14.69□□□□□ -0.06
COL9A1-209ENST00000489861 EIF4G3O43432 1585 aaKnown RBP14.67□□□□□ -0.06
COL9A1-209ENST00000489861 FBLN2P98095 1184 aa14.58□□□□□ -0.08
COL9A1-209ENST00000489861 PRDM2Q13029 1718 aa14.58□□□□□ -0.08
COL9A1-209ENST00000489861 AQRO60306 1485 aaKnown RBP eCLIP14.57□□□□□ -0.08
COL9A1-209ENST00000489861 TOPBP1Q92547 1522 aa14.55□□□□□ -0.08
COL9A1-209ENST00000489861 CLASP1Q7Z460 1538 aa14.52□□□□□ -0.08
COL9A1-209ENST00000489861 TARBP1Q13395 1621 aaKnown RBP14.51□□□□□ -0.09
COL9A1-209ENST00000489861 GAPVD1Q14C86 1478 aa14.41□□□□□ -0.1
COL9A1-209ENST00000489861 DNMBPQ6XZF7 1577 aa14.41□□□□□ -0.1
COL9A1-209ENST00000489861 TOP2AP11388 1531 aaKnown RBP14.41□□□□□ -0.1
COL9A1-209ENST00000489861 SYNJ1O43426 1573 aa14.39□□□□□ -0.11
COL9A1-209ENST00000489861 ABCC8Q09428 1581 aa14.39□□□□□ -0.11
COL9A1-209ENST00000489861 KIF13AQ9H1H9 1805 aa14.38□□□□□ -0.11
COL9A1-209ENST00000489861 SNAPC4Q5SXM2 1469 aa14.38□□□□□ -0.11
COL9A1-209ENST00000489861 KDM4FA0A1W2PPD8 638 aa14.37□□□□□ -0.11
COL9A1-209ENST00000489861 TDRD9Q8NDG6 1382 aaKnown RBP14.35□□□□□ -0.11
COL9A1-209ENST00000489861 POLA1P09884 1462 aaPredicted RBP14.35□□□□□ -0.11
COL9A1-209ENST00000489861 RAD54L2Q9Y4B4 1467 aa14.34□□□□□ -0.11
COL9A1-209ENST00000489861 CHMP7Q8WUX9 453 aaPredicted RBP14.33□□□□□ -0.12
COL9A1-209ENST00000489861 ERCC6L2Q5T890 1561 aa14.3□□□□□ -0.12
COL9A1-209ENST00000489861 CCDC88BA6NC98 1476 aa14.27□□□□□ -0.12
COL9A1-209ENST00000489861 MAGI1Q96QZ7 1491 aaPredicted RBP14.27□□□□□ -0.12
COL9A1-209ENST00000489861 SOGA1O94964 1423 aa14.25□□□□□ -0.13
COL9A1-209ENST00000489861 SYNJ2O15056 1496 aa14.25□□□□□ -0.13
COL9A1-209ENST00000489861 WDR97A6NE52 1622 aa14.22□□□□□ -0.13
COL9A1-209ENST00000489861 GRIN2BQ13224 1484 aa14.2□□□□□ -0.14
COL9A1-209ENST00000489861 PBRM1Q86U86 1689 aa14.16□□□□□ -0.14
COL9A1-209ENST00000489861 FGD5Q6ZNL6 1462 aa14.15□□□□□ -0.14
COL9A1-209ENST00000489861 CEP170Q5SW79 1584 aa14.14□□□□□ -0.15
COL9A1-209ENST00000489861 KDM6BO15054 1643 aa14.13□□□□□ -0.15
COL9A1-209ENST00000489861 FAM69CQ0P6D2 419 aa14.12□□□□□ -0.15
COL9A1-209ENST00000489861 HECW2Q9P2P5 1572 aa14.12□□□□□ -0.15
COL9A1-209ENST00000489861 ABCC10Q5T3U5 1492 aa14.11□□□□□ -0.15
COL9A1-209ENST00000489861 TSPOAP1O95153 1857 aa14.09□□□□□ -0.15
COL9A1-209ENST00000489861 DIP2BQ9P265 1576 aa14.08□□□□□ -0.16
COL9A1-209ENST00000489861 SHROOM2Q13796 1616 aa14.08□□□□□ -0.16
COL9A1-209ENST00000489861 ADGRL1O94910 1474 aa14.04□□□□□ -0.16
COL9A1-209ENST00000489861 GRIN2AQ12879 1464 aa14.04□□□□□ -0.16
COL9A1-209ENST00000489861 CUX1P39880 1505 aa14.04□□□□□ -0.16
COL9A1-209ENST00000489861 FBXO41Q8TF61 875 aa14.03□□□□□ -0.16
COL9A1-209ENST00000489861 NUP160Q12769 1436 aa14.02□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 67.5 ms