RNA–Protein interactions for RNA: ENST00000489857.5

FAM3D-204, Transcript of family with sequence similarity 3 member D, humanhuman

TSL 3

Gene FAM3D, Length 633 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
FAM3D-204ENST00000489857 NISCHQ9Y2I1 1504 aa38.02■■■■□ 3.68
FAM3D-204ENST00000489857 ABCC9O60706 1549 aa34.38■■■■□ 3.09
FAM3D-204ENST00000489857 CCDC180Q9P1Z9 1646 aa34.15■■■■□ 3.06
FAM3D-204ENST00000489857 RB1CC1Q8TDY2 1594 aa32.6■■■□□ 2.81
FAM3D-204ENST00000489857 DNAJC5BQ9UF47 199 aa32.44■■■□□ 2.78
FAM3D-204ENST00000489857 NACADO15069 1562 aa32.34■■■□□ 2.77
FAM3D-204ENST00000489857 DCAF8L2P0C7V8 631 aa32.14■■■□□ 2.74
FAM3D-204ENST00000489857 PABPN1Q86U42 306 aaKnown RBP eCLIP31.99■■■□□ 2.71
FAM3D-204ENST00000489857 MYO15BQ96JP2 1530 aa31.85■■■□□ 2.69
FAM3D-204ENST00000489857 UNC13AQ9UPW8 1703 aa31.84■■■□□ 2.69
FAM3D-204ENST00000489857 BICRAQ9NZM4 1560 aa31.71■■■□□ 2.67
FAM3D-204ENST00000489857 ZCCHC6Q5VYS8 1495 aaKnown RBP31.48■■■□□ 2.63
FAM3D-204ENST00000489857 DCAF1Q9Y4B6 1507 aa31.39■■■□□ 2.61
FAM3D-204ENST00000489857 SHROOM4Q9ULL8 1493 aa31.22■■■□□ 2.59
FAM3D-204ENST00000489857 SCRIBQ14160 1630 aa31.14■■■□□ 2.58
FAM3D-204ENST00000489857 CC2D2AQ9P2K1 1620 aa31.02■■■□□ 2.56
FAM3D-204ENST00000489857 CECR2Q9BXF3 1484 aa30.98■■■□□ 2.55
FAM3D-204ENST00000489857 EIF4G1Q04637 1599 aaKnown RBP30.92■■■□□ 2.54
FAM3D-204ENST00000489857 NCAPD3P42695 1498 aa29.89■■■□□ 2.38
FAM3D-204ENST00000489857 DNAJC5Q9H3Z4 198 aa29.88■■■□□ 2.37
FAM3D-204ENST00000489857 ATAD2BQ9ULI0 1458 aa29.78■■■□□ 2.36
FAM3D-204ENST00000489857 SMARCA4P51532 1647 aa29.68■■■□□ 2.34
FAM3D-204ENST00000489857 CUX2O14529 1486 aa29.68■■■□□ 2.34
FAM3D-204ENST00000489857 ERCC6Q03468 1493 aa29.67■■■□□ 2.34
FAM3D-204ENST00000489857 SMARCA2P51531 1590 aa29.65■■■□□ 2.34
FAM3D-204ENST00000489857 HMGXB3Q12766 1538 aa29.64■■■□□ 2.34
FAM3D-204ENST00000489857 BAZ1AQ9NRL2 1556 aaPredicted RBP29.51■■■□□ 2.31
FAM3D-204ENST00000489857 NESP48681 1621 aa29.49■■■□□ 2.31
FAM3D-204ENST00000489857 BAZ1BQ9UIG0 1483 aaKnown RBP29.46■■■□□ 2.31
FAM3D-204ENST00000489857 PEG3Q9GZU2 1588 aa29.4■■■□□ 2.3
FAM3D-204ENST00000489857 MROH2BQ7Z745 1585 aa29.31■■■□□ 2.28
FAM3D-204ENST00000489857 THOC2Q8NI27 1593 aaKnown RBP29.21■■■□□ 2.27
FAM3D-204ENST00000489857 LAMC3Q9Y6N6 1575 aa29.21■■■□□ 2.27
FAM3D-204ENST00000489857 KIF21AQ7Z4S6 1674 aa29.05■■■□□ 2.24
FAM3D-204ENST00000489857 PDS5BQ9NTI5 1447 aa29.05■■■□□ 2.24
FAM3D-204ENST00000489857 CADPSQ9ULU8 1353 aa28.97■■■□□ 2.23
FAM3D-204ENST00000489857 WIZO95785 1651 aa28.92■■■□□ 2.22
FAM3D-204ENST00000489857 MRC2Q9UBG0 1479 aa28.84■■■□□ 2.21
FAM3D-204ENST00000489857 WDR62O43379 1518 aa28.77■■■□□ 2.2
FAM3D-204ENST00000489857 CEP164Q9UPV0 1460 aa28.67■■■□□ 2.18
FAM3D-204ENST00000489857 RSF1Q96T23 1441 aaPredicted RBP28.64■■■□□ 2.18
FAM3D-204ENST00000489857 FANCD2Q9BXW9 1451 aa28.64■■■□□ 2.17
FAM3D-204ENST00000489857 CFTRP13569 1480 aa28.61■■■□□ 2.17
FAM3D-204ENST00000489857 TOP2AP11388 1531 aaKnown RBP28.55■■■□□ 2.16
FAM3D-204ENST00000489857 TRIM41Q8WV44 630 aa28.48■■■□□ 2.15
FAM3D-204ENST00000489857 URB2Q14146 1524 aaKnown RBP28.43■■■□□ 2.14
FAM3D-204ENST00000489857 OSCARQ8IYS5 282 aa28.29■■■□□ 2.12
FAM3D-204ENST00000489857 CCDC88BA6NC98 1476 aa28.24■■■□□ 2.11
FAM3D-204ENST00000489857 PRDM2Q13029 1718 aa28.22■■■□□ 2.11
FAM3D-204ENST00000489857 ZNF608Q9ULD9 1512 aaPredicted RBP28.13■■■□□ 2.09
FAM3D-204ENST00000489857 IFT140Q96RY7 1462 aa28.12■■■□□ 2.09
FAM3D-204ENST00000489857 TOPBP1Q92547 1522 aa28.08■■■□□ 2.09
FAM3D-204ENST00000489857 ABCC8Q09428 1581 aa27.97■■■□□ 2.07
FAM3D-204ENST00000489857 DNMBPQ6XZF7 1577 aa27.95■■■□□ 2.07
FAM3D-204ENST00000489857 RIMBP3CA6NJZ7 1639 aa27.95■■■□□ 2.06
FAM3D-204ENST00000489857 RIMBP3BA6NNM3 1639 aa27.95■■■□□ 2.06
FAM3D-204ENST00000489857 RIMBP3Q9UFD9 1639 aa27.95■■■□□ 2.06
FAM3D-204ENST00000489857 EIF4G3O43432 1585 aaKnown RBP27.92■■■□□ 2.06
FAM3D-204ENST00000489857 ARHGEF11O15085 1522 aa27.86■■■□□ 2.05
FAM3D-204ENST00000489857 TARBP1Q13395 1621 aaKnown RBP27.85■■■□□ 2.05
FAM3D-204ENST00000489857 AQRO60306 1485 aaKnown RBP eCLIP27.83■■■□□ 2.05
FAM3D-204ENST00000489857 POLA1P09884 1462 aaPredicted RBP27.79■■■□□ 2.04
FAM3D-204ENST00000489857 CHD1O14646 1710 aa27.72■■■□□ 2.03
FAM3D-204ENST00000489857 RAD54L2Q9Y4B4 1467 aa27.7■■■□□ 2.03
FAM3D-204ENST00000489857 FBLN2P98095 1184 aa27.65■■■□□ 2.02
FAM3D-204ENST00000489857 CYB5RLQ6IPT4 315 aa27.65■■■□□ 2.02
FAM3D-204ENST00000489857 SOGA1O94964 1423 aa27.65■■■□□ 2.02
FAM3D-204ENST00000489857 TDRD9Q8NDG6 1382 aaKnown RBP27.63■■■□□ 2.01
FAM3D-204ENST00000489857 FGD5Q6ZNL6 1462 aa27.59■■■□□ 2.01
FAM3D-204ENST00000489857 ARAP1Q96P48 1450 aa27.58■■■□□ 2.01
FAM3D-204ENST00000489857 CUX1P39880 1505 aa27.54■■■□□ 2
FAM3D-204ENST00000489857 SNAPC4Q5SXM2 1469 aa27.53■■■□□ 2
FAM3D-204ENST00000489857 WDR97A6NE52 1622 aa27.51■■□□□ 1.99
FAM3D-204ENST00000489857 CLASP1Q7Z460 1538 aa27.45■■□□□ 1.98
FAM3D-204ENST00000489857 MAGI1Q96QZ7 1491 aaPredicted RBP27.44■■□□□ 1.98
FAM3D-204ENST00000489857 GRIN2BQ13224 1484 aa27.43■■□□□ 1.98
FAM3D-204ENST00000489857 CHMP7Q8WUX9 453 aaPredicted RBP27.42■■□□□ 1.98
FAM3D-204ENST00000489857 TRHP20396 242 aaPredicted RBP27.38■■□□□ 1.97
FAM3D-204ENST00000489857 SYNJ1O43426 1573 aa27.37■■□□□ 1.97
FAM3D-204ENST00000489857 SYNJ2O15056 1496 aa27.36■■□□□ 1.97
FAM3D-204ENST00000489857 GAPVD1Q14C86 1478 aa27.31■■□□□ 1.96
FAM3D-204ENST00000489857 PBRM1Q86U86 1689 aa27.27■■□□□ 1.96
FAM3D-204ENST00000489857 ABCA10Q8WWZ4 1543 aa27.26■■□□□ 1.96
FAM3D-204ENST00000489857 ABCA5Q8WWZ7 1642 aa27.23■■□□□ 1.95
FAM3D-204ENST00000489857 SUPT5HO00267 1087 aaKnown RBP27.22■■□□□ 1.95
FAM3D-204ENST00000489857 WRNQ14191 1432 aaPredicted RBP eCLIP27.1■■□□□ 1.93
FAM3D-204ENST00000489857 GRIN2AQ12879 1464 aa27.07■■□□□ 1.92
FAM3D-204ENST00000489857 ADAMTS12P58397 1594 aa27.04■■□□□ 1.92
FAM3D-204ENST00000489857 TOP2BQ02880 1626 aa27.03■■□□□ 1.92
FAM3D-204ENST00000489857 BIVM-ERCC5R4GMW8 1640 aa27.02■■□□□ 1.92
FAM3D-204ENST00000489857 ERCC6L2Q5T890 1561 aa27.02■■□□□ 1.92
FAM3D-204ENST00000489857 NUP160Q12769 1436 aa27.01■■□□□ 1.91
FAM3D-204ENST00000489857 CEP170Q5SW79 1584 aa27■■□□□ 1.91
FAM3D-204ENST00000489857 FHAD1B1AJZ9 1412 aa26.96■■□□□ 1.91
FAM3D-204ENST00000489857 ERICH3Q5RHP9 1530 aa26.9■■□□□ 1.9
FAM3D-204ENST00000489857 SHROOM2Q13796 1616 aa26.89■■□□□ 1.9
FAM3D-204ENST00000489857 PRG4Q92954 1404 aaPredicted RBP26.75■■□□□ 1.87
FAM3D-204ENST00000489857 JPH4Q96JJ6 628 aa26.71■■□□□ 1.87
FAM3D-204ENST00000489857 AEBP2Q6ZN18 517 aaPredicted RBP26.68■■□□□ 1.86
FAM3D-204ENST00000489857 RUSC2Q8N2Y8 1516 aa26.67■■□□□ 1.86
Retrieved 100 of 20,778 RNA–protein pairs in 46.2 ms