RNA–Protein interactions for RNA: ENST00000489555.1

PRUNE2-213, Transcript of prune homolog 2, humanhuman

TSL 3

Gene PRUNE2, Length 635 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRUNE2-213ENST00000489555 NISCHQ9Y2I1 1504 aa19.28■□□□□ 0.68
PRUNE2-213ENST00000489555 ABCC9O60706 1549 aa17.66■□□□□ 0.42
PRUNE2-213ENST00000489555 CCDC180Q9P1Z9 1646 aa17.58■□□□□ 0.41
PRUNE2-213ENST00000489555 RB1CC1Q8TDY2 1594 aa16.81■□□□□ 0.28
PRUNE2-213ENST00000489555 DNAJC5BQ9UF47 199 aa16.78■□□□□ 0.28
PRUNE2-213ENST00000489555 NACADO15069 1562 aa16.64■□□□□ 0.25
PRUNE2-213ENST00000489555 UNC13AQ9UPW8 1703 aa16.48■□□□□ 0.23
PRUNE2-213ENST00000489555 MYO15BQ96JP2 1530 aa16.36■□□□□ 0.21
PRUNE2-213ENST00000489555 BICRAQ9NZM4 1560 aa16.3■□□□□ 0.2
PRUNE2-213ENST00000489555 PABPN1Q86U42 306 aaKnown RBP eCLIP16.29■□□□□ 0.2
PRUNE2-213ENST00000489555 SHROOM4Q9ULL8 1493 aa16.2■□□□□ 0.18
PRUNE2-213ENST00000489555 DCAF8L2P0C7V8 631 aa16.17■□□□□ 0.18
PRUNE2-213ENST00000489555 CC2D2AQ9P2K1 1620 aa16.03■□□□□ 0.16
PRUNE2-213ENST00000489555 DCAF1Q9Y4B6 1507 aa16.01■□□□□ 0.15
PRUNE2-213ENST00000489555 CECR2Q9BXF3 1484 aa15.99■□□□□ 0.15
PRUNE2-213ENST00000489555 EIF4G1Q04637 1599 aaKnown RBP15.93■□□□□ 0.14
PRUNE2-213ENST00000489555 ZCCHC6Q5VYS8 1495 aaKnown RBP15.92■□□□□ 0.14
PRUNE2-213ENST00000489555 SCRIBQ14160 1630 aa15.82■□□□□ 0.12
PRUNE2-213ENST00000489555 DNAJC5Q9H3Z4 198 aa15.75■□□□□ 0.11
PRUNE2-213ENST00000489555 CUX2O14529 1486 aa15.49■□□□□ 0.07
PRUNE2-213ENST00000489555 NCAPD3P42695 1498 aa15.32■□□□□ 0.04
PRUNE2-213ENST00000489555 ERCC6Q03468 1493 aa15.31■□□□□ 0.04
PRUNE2-213ENST00000489555 HMGXB3Q12766 1538 aa15.22■□□□□ 0.03
PRUNE2-213ENST00000489555 SMARCA2P51531 1590 aa15.19■□□□□ 0.02
PRUNE2-213ENST00000489555 ATAD2BQ9ULI0 1458 aa15.18■□□□□ 0.02
PRUNE2-213ENST00000489555 SMARCA4P51532 1647 aa15.14■□□□□ 0.01
PRUNE2-213ENST00000489555 THOC2Q8NI27 1593 aaKnown RBP15.11■□□□□ 0.01
PRUNE2-213ENST00000489555 NESP48681 1621 aa15.07■□□□□ 0
PRUNE2-213ENST00000489555 LAMC3Q9Y6N6 1575 aa15.07■□□□□ 0
PRUNE2-213ENST00000489555 PEG3Q9GZU2 1588 aa15.06■□□□□ 0
PRUNE2-213ENST00000489555 BAZ1AQ9NRL2 1556 aaPredicted RBP15.02■□□□□ -0
PRUNE2-213ENST00000489555 BAZ1BQ9UIG0 1483 aaKnown RBP15.02■□□□□ -0
PRUNE2-213ENST00000489555 KIF21AQ7Z4S6 1674 aa14.99□□□□□ -0.01
PRUNE2-213ENST00000489555 PDS5BQ9NTI5 1447 aa14.93□□□□□ -0.02
PRUNE2-213ENST00000489555 WDR62O43379 1518 aa14.83□□□□□ -0.04
PRUNE2-213ENST00000489555 MRC2Q9UBG0 1479 aa14.82□□□□□ -0.04
PRUNE2-213ENST00000489555 MROH2BQ7Z745 1585 aa14.79□□□□□ -0.04
PRUNE2-213ENST00000489555 TRIM41Q8WV44 630 aa14.79□□□□□ -0.04
PRUNE2-213ENST00000489555 CADPSQ9ULU8 1353 aa14.79□□□□□ -0.04
PRUNE2-213ENST00000489555 CEP164Q9UPV0 1460 aa14.69□□□□□ -0.06
PRUNE2-213ENST00000489555 WIZO95785 1651 aa14.62□□□□□ -0.07
PRUNE2-213ENST00000489555 OSCARQ8IYS5 282 aa14.62□□□□□ -0.07
PRUNE2-213ENST00000489555 FANCD2Q9BXW9 1451 aa14.62□□□□□ -0.07
PRUNE2-213ENST00000489555 PRDM2Q13029 1718 aa14.58□□□□□ -0.07
PRUNE2-213ENST00000489555 CFTRP13569 1480 aa14.58□□□□□ -0.08
PRUNE2-213ENST00000489555 RIMBP3CA6NJZ7 1639 aa14.53□□□□□ -0.08
PRUNE2-213ENST00000489555 RIMBP3BA6NNM3 1639 aa14.53□□□□□ -0.08
PRUNE2-213ENST00000489555 RIMBP3Q9UFD9 1639 aa14.53□□□□□ -0.08
PRUNE2-213ENST00000489555 URB2Q14146 1524 aaKnown RBP14.51□□□□□ -0.09
PRUNE2-213ENST00000489555 TOP2AP11388 1531 aaKnown RBP14.46□□□□□ -0.09
PRUNE2-213ENST00000489555 ARHGEF11O15085 1522 aa14.44□□□□□ -0.1
PRUNE2-213ENST00000489555 IFT140Q96RY7 1462 aa14.43□□□□□ -0.1
PRUNE2-213ENST00000489555 RSF1Q96T23 1441 aaPredicted RBP14.37□□□□□ -0.11
PRUNE2-213ENST00000489555 ZNF608Q9ULD9 1512 aaPredicted RBP14.36□□□□□ -0.11
PRUNE2-213ENST00000489555 ABCC8Q09428 1581 aa14.35□□□□□ -0.11
PRUNE2-213ENST00000489555 EIF4G3O43432 1585 aaKnown RBP14.34□□□□□ -0.11
PRUNE2-213ENST00000489555 CHD1O14646 1710 aa14.33□□□□□ -0.12
PRUNE2-213ENST00000489555 TOPBP1Q92547 1522 aa14.32□□□□□ -0.12
PRUNE2-213ENST00000489555 DNMBPQ6XZF7 1577 aa14.28□□□□□ -0.12
PRUNE2-213ENST00000489555 TARBP1Q13395 1621 aaKnown RBP14.26□□□□□ -0.13
PRUNE2-213ENST00000489555 ARAP1Q96P48 1450 aa14.25□□□□□ -0.13
PRUNE2-213ENST00000489555 CYB5RLQ6IPT4 315 aa14.23□□□□□ -0.13
PRUNE2-213ENST00000489555 CCDC88BA6NC98 1476 aa14.23□□□□□ -0.13
PRUNE2-213ENST00000489555 WDR97A6NE52 1622 aa14.21□□□□□ -0.13
PRUNE2-213ENST00000489555 AQRO60306 1485 aaKnown RBP eCLIP14.16□□□□□ -0.14
PRUNE2-213ENST00000489555 TRHP20396 242 aaPredicted RBP14.15□□□□□ -0.14
PRUNE2-213ENST00000489555 POLA1P09884 1462 aaPredicted RBP14.14□□□□□ -0.15
PRUNE2-213ENST00000489555 CLASP1Q7Z460 1538 aa14.14□□□□□ -0.15
PRUNE2-213ENST00000489555 SYNJ1O43426 1573 aa14.11□□□□□ -0.15
PRUNE2-213ENST00000489555 MAGI1Q96QZ7 1491 aaPredicted RBP14.08□□□□□ -0.16
PRUNE2-213ENST00000489555 AEBP2Q6ZN18 517 aaPredicted RBP14.07□□□□□ -0.16
PRUNE2-213ENST00000489555 FBLN2P98095 1184 aa14.06□□□□□ -0.16
PRUNE2-213ENST00000489555 SNAPC4Q5SXM2 1469 aa14.06□□□□□ -0.16
PRUNE2-213ENST00000489555 SOGA1O94964 1423 aa14.03□□□□□ -0.16
PRUNE2-213ENST00000489555 RAD54L2Q9Y4B4 1467 aa14.02□□□□□ -0.16
PRUNE2-213ENST00000489555 SYNJ2O15056 1496 aa14.01□□□□□ -0.17
PRUNE2-213ENST00000489555 GRIN2BQ13224 1484 aa14□□□□□ -0.17
PRUNE2-213ENST00000489555 TDRD9Q8NDG6 1382 aaKnown RBP14□□□□□ -0.17
PRUNE2-213ENST00000489555 PBRM1Q86U86 1689 aa14□□□□□ -0.17
PRUNE2-213ENST00000489555 FGD5Q6ZNL6 1462 aa13.99□□□□□ -0.17
PRUNE2-213ENST00000489555 CHMP7Q8WUX9 453 aaPredicted RBP13.97□□□□□ -0.17
PRUNE2-213ENST00000489555 GAPVD1Q14C86 1478 aa13.95□□□□□ -0.18
PRUNE2-213ENST00000489555 CUX1P39880 1505 aa13.94□□□□□ -0.18
PRUNE2-213ENST00000489555 ABCA5Q8WWZ7 1642 aa13.91□□□□□ -0.18
PRUNE2-213ENST00000489555 ABCA10Q8WWZ4 1543 aa13.87□□□□□ -0.19
PRUNE2-213ENST00000489555 KIF13AQ9H1H9 1805 aa13.85□□□□□ -0.19
PRUNE2-213ENST00000489555 SHROOM2Q13796 1616 aa13.85□□□□□ -0.19
PRUNE2-213ENST00000489555 GRIN2AQ12879 1464 aa13.82□□□□□ -0.2
PRUNE2-213ENST00000489555 CEP170Q5SW79 1584 aa13.82□□□□□ -0.2
PRUNE2-213ENST00000489555 ADAMTS12P58397 1594 aa13.81□□□□□ -0.2
PRUNE2-213ENST00000489555 NUP160Q12769 1436 aa13.81□□□□□ -0.2
PRUNE2-213ENST00000489555 ERCC6L2Q5T890 1561 aa13.79□□□□□ -0.2
PRUNE2-213ENST00000489555 BIVM-ERCC5R4GMW8 1640 aa13.72□□□□□ -0.21
PRUNE2-213ENST00000489555 ERICH3Q5RHP9 1530 aa13.72□□□□□ -0.21
PRUNE2-213ENST00000489555 FHAD1B1AJZ9 1412 aa13.72□□□□□ -0.21
PRUNE2-213ENST00000489555 WRNQ14191 1432 aaPredicted RBP eCLIP13.72□□□□□ -0.21
PRUNE2-213ENST00000489555 TOP2BQ02880 1626 aa13.69□□□□□ -0.22
PRUNE2-213ENST00000489555 MAPKBP1O60336 1514 aa13.69□□□□□ -0.22
PRUNE2-213ENST00000489555 ABCC10Q5T3U5 1492 aa13.66□□□□□ -0.22
PRUNE2-213ENST00000489555 DIP2BQ9P265 1576 aa13.65□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 59.5 ms