RNA–Protein interactions for RNA: ENST00000489554.1

SCAMP4-208, Transcript of secretory carrier membrane protein 4, humanhuman

TSL 3

Gene SCAMP4, Length 573 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCAMP4-208ENST00000489554 NISCHQ9Y2I1 1504 aa25.83■■□□□ 1.72
SCAMP4-208ENST00000489554 CCDC180Q9P1Z9 1646 aa23.05■■□□□ 1.28
SCAMP4-208ENST00000489554 ABCC9O60706 1549 aa22.75■■□□□ 1.23
SCAMP4-208ENST00000489554 RB1CC1Q8TDY2 1594 aa21.82■■□□□ 1.08
SCAMP4-208ENST00000489554 NACADO15069 1562 aa21.75■■□□□ 1.07
SCAMP4-208ENST00000489554 DCAF8L2P0C7V8 631 aa21.65■■□□□ 1.06
SCAMP4-208ENST00000489554 MYO15BQ96JP2 1530 aa21.57■■□□□ 1.04
SCAMP4-208ENST00000489554 ZCCHC6Q5VYS8 1495 aaKnown RBP21.47■■□□□ 1.03
SCAMP4-208ENST00000489554 DCAF1Q9Y4B6 1507 aa21.39■■□□□ 1.01
SCAMP4-208ENST00000489554 UNC13AQ9UPW8 1703 aa21.23■□□□□ 0.99
SCAMP4-208ENST00000489554 PABPN1Q86U42 306 aaKnown RBP eCLIP21.22■□□□□ 0.99
SCAMP4-208ENST00000489554 BICRAQ9NZM4 1560 aa21.13■□□□□ 0.97
SCAMP4-208ENST00000489554 DNAJC5BQ9UF47 199 aa21.06■□□□□ 0.96
SCAMP4-208ENST00000489554 SCRIBQ14160 1630 aa20.99■□□□□ 0.95
SCAMP4-208ENST00000489554 SHROOM4Q9ULL8 1493 aa20.97■□□□□ 0.95
SCAMP4-208ENST00000489554 EIF4G1Q04637 1599 aaKnown RBP20.61■□□□□ 0.89
SCAMP4-208ENST00000489554 CC2D2AQ9P2K1 1620 aa20.56■□□□□ 0.88
SCAMP4-208ENST00000489554 CECR2Q9BXF3 1484 aa20.49■□□□□ 0.87
SCAMP4-208ENST00000489554 NCAPD3P42695 1498 aa20.08■□□□□ 0.81
SCAMP4-208ENST00000489554 SMARCA4P51532 1647 aa20.07■□□□□ 0.8
SCAMP4-208ENST00000489554 BAZ1AQ9NRL2 1556 aaPredicted RBP20.04■□□□□ 0.8
SCAMP4-208ENST00000489554 ATAD2BQ9ULI0 1458 aa20.04■□□□□ 0.8
SCAMP4-208ENST00000489554 SMARCA2P51531 1590 aa20.02■□□□□ 0.8
SCAMP4-208ENST00000489554 HMGXB3Q12766 1538 aa19.95■□□□□ 0.78
SCAMP4-208ENST00000489554 PEG3Q9GZU2 1588 aa19.9■□□□□ 0.78
SCAMP4-208ENST00000489554 MROH2BQ7Z745 1585 aa19.88■□□□□ 0.77
SCAMP4-208ENST00000489554 BAZ1BQ9UIG0 1483 aaKnown RBP19.86■□□□□ 0.77
SCAMP4-208ENST00000489554 ERCC6Q03468 1493 aa19.66■□□□□ 0.74
SCAMP4-208ENST00000489554 WIZO95785 1651 aa19.63■□□□□ 0.73
SCAMP4-208ENST00000489554 NESP48681 1621 aa19.61■□□□□ 0.73
SCAMP4-208ENST00000489554 RSF1Q96T23 1441 aaPredicted RBP19.59■□□□□ 0.73
SCAMP4-208ENST00000489554 LAMC3Q9Y6N6 1575 aa19.57■□□□□ 0.72
SCAMP4-208ENST00000489554 CUX2O14529 1486 aa19.54■□□□□ 0.72
SCAMP4-208ENST00000489554 CADPSQ9ULU8 1353 aa19.47■□□□□ 0.71
SCAMP4-208ENST00000489554 PDS5BQ9NTI5 1447 aa19.47■□□□□ 0.71
SCAMP4-208ENST00000489554 TOP2AP11388 1531 aaKnown RBP19.46■□□□□ 0.71
SCAMP4-208ENST00000489554 THOC2Q8NI27 1593 aaKnown RBP19.37■□□□□ 0.69
SCAMP4-208ENST00000489554 KIF21AQ7Z4S6 1674 aa19.35■□□□□ 0.69
SCAMP4-208ENST00000489554 CFTRP13569 1480 aa19.31■□□□□ 0.68
SCAMP4-208ENST00000489554 MRC2Q9UBG0 1479 aa19.27■□□□□ 0.67
SCAMP4-208ENST00000489554 FANCD2Q9BXW9 1451 aa19.24■□□□□ 0.67
SCAMP4-208ENST00000489554 CEP164Q9UPV0 1460 aa19.24■□□□□ 0.67
SCAMP4-208ENST00000489554 CCDC88BA6NC98 1476 aa19.22■□□□□ 0.67
SCAMP4-208ENST00000489554 WDR62O43379 1518 aa19.2■□□□□ 0.66
SCAMP4-208ENST00000489554 DNAJC5Q9H3Z4 198 aa19.18■□□□□ 0.66
SCAMP4-208ENST00000489554 PRDM2Q13029 1718 aa19.09■□□□□ 0.65
SCAMP4-208ENST00000489554 URB2Q14146 1524 aaKnown RBP19.05■□□□□ 0.64
SCAMP4-208ENST00000489554 ABCC8Q09428 1581 aa18.93■□□□□ 0.62
SCAMP4-208ENST00000489554 SUPT5HO00267 1087 aaKnown RBP18.92■□□□□ 0.62
SCAMP4-208ENST00000489554 TOPBP1Q92547 1522 aa18.9■□□□□ 0.62
SCAMP4-208ENST00000489554 DNMBPQ6XZF7 1577 aa18.86■□□□□ 0.61
SCAMP4-208ENST00000489554 IFT140Q96RY7 1462 aa18.86■□□□□ 0.61
SCAMP4-208ENST00000489554 ZNF608Q9ULD9 1512 aaPredicted RBP18.75■□□□□ 0.59
SCAMP4-208ENST00000489554 POLA1P09884 1462 aaPredicted RBP18.73■□□□□ 0.59
SCAMP4-208ENST00000489554 TARBP1Q13395 1621 aaKnown RBP18.7■□□□□ 0.58
SCAMP4-208ENST00000489554 OSCARQ8IYS5 282 aa18.69■□□□□ 0.58
SCAMP4-208ENST00000489554 EIF4G3O43432 1585 aaKnown RBP18.68■□□□□ 0.58
SCAMP4-208ENST00000489554 CUX1P39880 1505 aa18.67■□□□□ 0.58
SCAMP4-208ENST00000489554 SOGA1O94964 1423 aa18.66■□□□□ 0.58
SCAMP4-208ENST00000489554 FGD5Q6ZNL6 1462 aa18.65■□□□□ 0.58
SCAMP4-208ENST00000489554 AQRO60306 1485 aaKnown RBP eCLIP18.63■□□□□ 0.572e-7■■■■■ 46.8
SCAMP4-208ENST00000489554 RAD54L2Q9Y4B4 1467 aa18.63■□□□□ 0.57
SCAMP4-208ENST00000489554 WDR97A6NE52 1622 aa18.58■□□□□ 0.56
SCAMP4-208ENST00000489554 TDRD9Q8NDG6 1382 aaKnown RBP18.56■□□□□ 0.56
SCAMP4-208ENST00000489554 WRNQ14191 1432 aaPredicted RBP eCLIP18.49■□□□□ 0.55
SCAMP4-208ENST00000489554 ABCA10Q8WWZ4 1543 aa18.48■□□□□ 0.55
SCAMP4-208ENST00000489554 GRIN2BQ13224 1484 aa18.47■□□□□ 0.55
SCAMP4-208ENST00000489554 FBLN2P98095 1184 aa18.46■□□□□ 0.55
SCAMP4-208ENST00000489554 SNAPC4Q5SXM2 1469 aa18.46■□□□□ 0.54
SCAMP4-208ENST00000489554 MAGI1Q96QZ7 1491 aaPredicted RBP18.46■□□□□ 0.54
SCAMP4-208ENST00000489554 TOP2BQ02880 1626 aa18.45■□□□□ 0.54
SCAMP4-208ENST00000489554 CHD1O14646 1710 aa18.45■□□□□ 0.54
SCAMP4-208ENST00000489554 BIVM-ERCC5R4GMW8 1640 aa18.45■□□□□ 0.54
SCAMP4-208ENST00000489554 GAPVD1Q14C86 1478 aa18.44■□□□□ 0.54
SCAMP4-208ENST00000489554 TRIM41Q8WV44 630 aa18.43■□□□□ 0.54
SCAMP4-208ENST00000489554 SYNJ1O43426 1573 aa18.42■□□□□ 0.54
SCAMP4-208ENST00000489554 ABCA5Q8WWZ7 1642 aa18.39■□□□□ 0.53
SCAMP4-208ENST00000489554 CHMP7Q8WUX9 453 aaPredicted RBP18.39■□□□□ 0.53
SCAMP4-208ENST00000489554 SYNJ2O15056 1496 aa18.38■□□□□ 0.53
SCAMP4-208ENST00000489554 RIMBP3CA6NJZ7 1639 aa18.37■□□□□ 0.53
SCAMP4-208ENST00000489554 RIMBP3BA6NNM3 1639 aa18.37■□□□□ 0.53
SCAMP4-208ENST00000489554 RIMBP3Q9UFD9 1639 aa18.37■□□□□ 0.53
SCAMP4-208ENST00000489554 PBRM1Q86U86 1689 aa18.37■□□□□ 0.53
SCAMP4-208ENST00000489554 ARHGEF11O15085 1522 aa18.36■□□□□ 0.53
SCAMP4-208ENST00000489554 CLASP1Q7Z460 1538 aa18.29■□□□□ 0.52
SCAMP4-208ENST00000489554 ERICH3Q5RHP9 1530 aa18.25■□□□□ 0.51
SCAMP4-208ENST00000489554 ADAMTS12P58397 1594 aa18.24■□□□□ 0.51
SCAMP4-208ENST00000489554 FHAD1B1AJZ9 1412 aa18.23■□□□□ 0.51
SCAMP4-208ENST00000489554 GRIN2AQ12879 1464 aa18.22■□□□□ 0.51
SCAMP4-208ENST00000489554 CYB5RLQ6IPT4 315 aa18.21■□□□□ 0.51
SCAMP4-208ENST00000489554 ARAP1Q96P48 1450 aa18.2■□□□□ 0.5
SCAMP4-208ENST00000489554 NUP160Q12769 1436 aa18.16■□□□□ 0.5
SCAMP4-208ENST00000489554 KIF27Q86VH2 1401 aa18.14■□□□□ 0.49
SCAMP4-208ENST00000489554 CEP170Q5SW79 1584 aa18.13■□□□□ 0.49
SCAMP4-208ENST00000489554 IGF1RP08069 1367 aa18.07■□□□□ 0.48
SCAMP4-208ENST00000489554 CUL7Q14999 1698 aa18.03■□□□□ 0.48
SCAMP4-208ENST00000489554 SHROOM2Q13796 1616 aa18.02■□□□□ 0.48
SCAMP4-208ENST00000489554 ERCC6L2Q5T890 1561 aa17.98■□□□□ 0.47
SCAMP4-208ENST00000489554 RUSC2Q8N2Y8 1516 aa17.98■□□□□ 0.47
SCAMP4-208ENST00000489554 JPH4Q96JJ6 628 aa17.97■□□□□ 0.47
Retrieved 100 of 20,778 RNA–protein pairs in 23.5 ms