RNA–Protein interactions for RNA: ENST00000489434.3

SFXN3-207, Transcript of sideroflexin 3, humanhuman

TSL 3

Gene SFXN3, Length 744 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SFXN3-207ENST00000489434 NISCHQ9Y2I1 1504 aa29.84■■■□□ 2.37
SFXN3-207ENST00000489434 ABCC9O60706 1549 aa26.88■■□□□ 1.89
SFXN3-207ENST00000489434 CCDC180Q9P1Z9 1646 aa26.83■■□□□ 1.89
SFXN3-207ENST00000489434 RB1CC1Q8TDY2 1594 aa25.6■■□□□ 1.69
SFXN3-207ENST00000489434 NACADO15069 1562 aa25.39■■□□□ 1.66
SFXN3-207ENST00000489434 DCAF8L2P0C7V8 631 aa25.3■■□□□ 1.64
SFXN3-207ENST00000489434 DNAJC5BQ9UF47 199 aa25.23■■□□□ 1.63
SFXN3-207ENST00000489434 PABPN1Q86U42 306 aaKnown RBP eCLIP25.02■■□□□ 1.6
SFXN3-207ENST00000489434 MYO15BQ96JP2 1530 aa25.02■■□□□ 1.6
SFXN3-207ENST00000489434 UNC13AQ9UPW8 1703 aa24.95■■□□□ 1.58
SFXN3-207ENST00000489434 BICRAQ9NZM4 1560 aa24.76■■□□□ 1.55
SFXN3-207ENST00000489434 ZCCHC6Q5VYS8 1495 aaKnown RBP24.7■■□□□ 1.54
SFXN3-207ENST00000489434 DCAF1Q9Y4B6 1507 aa24.66■■□□□ 1.54
SFXN3-207ENST00000489434 SHROOM4Q9ULL8 1493 aa24.52■■□□□ 1.52
SFXN3-207ENST00000489434 SCRIBQ14160 1630 aa24.42■■□□□ 1.5
SFXN3-207ENST00000489434 CC2D2AQ9P2K1 1620 aa24.28■■□□□ 1.48
SFXN3-207ENST00000489434 CECR2Q9BXF3 1484 aa24.25■■□□□ 1.47
SFXN3-207ENST00000489434 EIF4G1Q04637 1599 aaKnown RBP24.2■■□□□ 1.47
SFXN3-207ENST00000489434 NCAPD3P42695 1498 aa23.43■■□□□ 1.34
SFXN3-207ENST00000489434 ATAD2BQ9ULI0 1458 aa23.33■■□□□ 1.33
SFXN3-207ENST00000489434 SMARCA2P51531 1590 aa23.31■■□□□ 1.32
SFXN3-207ENST00000489434 DNAJC5Q9H3Z4 198 aa23.3■■□□□ 1.32
SFXN3-207ENST00000489434 SMARCA4P51532 1647 aa23.29■■□□□ 1.32
SFXN3-207ENST00000489434 ERCC6Q03468 1493 aa23.28■■□□□ 1.32
SFXN3-207ENST00000489434 HMGXB3Q12766 1538 aa23.25■■□□□ 1.31
SFXN3-207ENST00000489434 CUX2O14529 1486 aa23.23■■□□□ 1.31
SFXN3-207ENST00000489434 BAZ1AQ9NRL2 1556 aaPredicted RBP23.19■■□□□ 1.3
SFXN3-207ENST00000489434 BAZ1BQ9UIG0 1483 aaKnown RBP23.14■■□□□ 1.29
SFXN3-207ENST00000489434 PEG3Q9GZU2 1588 aa23.06■■□□□ 1.28
SFXN3-207ENST00000489434 NESP48681 1621 aa23.04■■□□□ 1.28
SFXN3-207ENST00000489434 MROH2BQ7Z745 1585 aa22.96■■□□□ 1.27
SFXN3-207ENST00000489434 LAMC3Q9Y6N6 1575 aa22.93■■□□□ 1.26
SFXN3-207ENST00000489434 PDS5BQ9NTI5 1447 aa22.83■■□□□ 1.25
SFXN3-207ENST00000489434 THOC2Q8NI27 1593 aaKnown RBP22.82■■□□□ 1.24
SFXN3-207ENST00000489434 KIF21AQ7Z4S6 1674 aa22.76■■□□□ 1.23
SFXN3-207ENST00000489434 CADPSQ9ULU8 1353 aa22.73■■□□□ 1.23
SFXN3-207ENST00000489434 WIZO95785 1651 aa22.68■■□□□ 1.22
SFXN3-207ENST00000489434 MRC2Q9UBG0 1479 aa22.6■■□□□ 1.21
SFXN3-207ENST00000489434 WDR62O43379 1518 aa22.52■■□□□ 1.2
SFXN3-207ENST00000489434 CEP164Q9UPV0 1460 aa22.51■■□□□ 1.19
SFXN3-207ENST00000489434 RSF1Q96T23 1441 aaPredicted RBP22.48■■□□□ 1.19
SFXN3-207ENST00000489434 FANCD2Q9BXW9 1451 aa22.47■■□□□ 1.19
SFXN3-207ENST00000489434 CFTRP13569 1480 aa22.43■■□□□ 1.18
SFXN3-207ENST00000489434 TOP2AP11388 1531 aaKnown RBP22.42■■□□□ 1.18
SFXN3-207ENST00000489434 TRIM41Q8WV44 630 aa22.27■■□□□ 1.16
SFXN3-207ENST00000489434 URB2Q14146 1524 aaKnown RBP22.25■■□□□ 1.15
SFXN3-207ENST00000489434 PRDM2Q13029 1718 aa22.22■■□□□ 1.15
SFXN3-207ENST00000489434 OSCARQ8IYS5 282 aa22.2■■□□□ 1.14
SFXN3-207ENST00000489434 CCDC88BA6NC98 1476 aa22.16■■□□□ 1.14
SFXN3-207ENST00000489434 IFT140Q96RY7 1462 aa22.06■■□□□ 1.12
SFXN3-207ENST00000489434 ABCC8Q09428 1581 aa22.04■■□□□ 1.12
SFXN3-207ENST00000489434 TOPBP1Q92547 1522 aa22.01■■□□□ 1.11
SFXN3-207ENST00000489434 ZNF608Q9ULD9 1512 aaPredicted RBP21.97■■□□□ 1.11
SFXN3-207ENST00000489434 DNMBPQ6XZF7 1577 aa21.94■■□□□ 1.1
SFXN3-207ENST00000489434 EIF4G3O43432 1585 aaKnown RBP21.87■■□□□ 1.09
SFXN3-207ENST00000489434 RIMBP3CA6NJZ7 1639 aa21.84■■□□□ 1.09
SFXN3-207ENST00000489434 RIMBP3BA6NNM3 1639 aa21.84■■□□□ 1.09
SFXN3-207ENST00000489434 RIMBP3Q9UFD9 1639 aa21.84■■□□□ 1.09
SFXN3-207ENST00000489434 TARBP1Q13395 1621 aaKnown RBP21.8■■□□□ 1.08
SFXN3-207ENST00000489434 AQRO60306 1485 aaKnown RBP eCLIP21.8■■□□□ 1.08
SFXN3-207ENST00000489434 POLA1P09884 1462 aaPredicted RBP21.77■■□□□ 1.08
SFXN3-207ENST00000489434 ARHGEF11O15085 1522 aa21.77■■□□□ 1.08
SFXN3-207ENST00000489434 FBLN2P98095 1184 aa21.74■■□□□ 1.07
SFXN3-207ENST00000489434 CHD1O14646 1710 aa21.73■■□□□ 1.07
SFXN3-207ENST00000489434 SOGA1O94964 1423 aa21.72■■□□□ 1.07
SFXN3-207ENST00000489434 RAD54L2Q9Y4B4 1467 aa21.69■■□□□ 1.06
SFXN3-207ENST00000489434 CYB5RLQ6IPT4 315 aa21.67■■□□□ 1.06
SFXN3-207ENST00000489434 TDRD9Q8NDG6 1382 aaKnown RBP21.66■■□□□ 1.06
SFXN3-207ENST00000489434 FGD5Q6ZNL6 1462 aa21.64■■□□□ 1.05
SFXN3-207ENST00000489434 WDR97A6NE52 1622 aa21.63■■□□□ 1.05
SFXN3-207ENST00000489434 CUX1P39880 1505 aa21.59■■□□□ 1.05
SFXN3-207ENST00000489434 SNAPC4Q5SXM2 1469 aa21.58■■□□□ 1.04
SFXN3-207ENST00000489434 CHMP7Q8WUX9 453 aaPredicted RBP21.57■■□□□ 1.04
SFXN3-207ENST00000489434 MAGI1Q96QZ7 1491 aaPredicted RBP21.55■■□□□ 1.04
SFXN3-207ENST00000489434 GRIN2BQ13224 1484 aa21.54■■□□□ 1.04
SFXN3-207ENST00000489434 ARAP1Q96P48 1450 aa21.54■■□□□ 1.04
SFXN3-207ENST00000489434 SYNJ1O43426 1573 aa21.5■■□□□ 1.03
SFXN3-207ENST00000489434 SUPT5HO00267 1087 aaKnown RBP21.49■■□□□ 1.03
SFXN3-207ENST00000489434 TRHP20396 242 aaPredicted RBP21.49■■□□□ 1.03
SFXN3-207ENST00000489434 SYNJ2O15056 1496 aa21.47■■□□□ 1.03
SFXN3-207ENST00000489434 CLASP1Q7Z460 1538 aa21.46■■□□□ 1.03
SFXN3-207ENST00000489434 GAPVD1Q14C86 1478 aa21.45■■□□□ 1.02
SFXN3-207ENST00000489434 PBRM1Q86U86 1689 aa21.41■■□□□ 1.02
SFXN3-207ENST00000489434 ABCA10Q8WWZ4 1543 aa21.39■■□□□ 1.02
SFXN3-207ENST00000489434 WRNQ14191 1432 aaPredicted RBP eCLIP21.35■■□□□ 1.01
SFXN3-207ENST00000489434 ABCA5Q8WWZ7 1642 aa21.34■■□□□ 1.01
SFXN3-207ENST00000489434 TOP2BQ02880 1626 aa21.25■□□□□ 0.99
SFXN3-207ENST00000489434 GRIN2AQ12879 1464 aa21.25■□□□□ 0.99
SFXN3-207ENST00000489434 BIVM-ERCC5R4GMW8 1640 aa21.23■□□□□ 0.99
SFXN3-207ENST00000489434 ADAMTS12P58397 1594 aa21.2■□□□□ 0.98
SFXN3-207ENST00000489434 FHAD1B1AJZ9 1412 aa21.18■□□□□ 0.98
SFXN3-207ENST00000489434 NUP160Q12769 1436 aa21.16■□□□□ 0.98
SFXN3-207ENST00000489434 ERICH3Q5RHP9 1530 aa21.14■□□□□ 0.98
SFXN3-207ENST00000489434 CEP170Q5SW79 1584 aa21.14■□□□□ 0.97
SFXN3-207ENST00000489434 ERCC6L2Q5T890 1561 aa21.09■□□□□ 0.97
SFXN3-207ENST00000489434 SHROOM2Q13796 1616 aa21.07■□□□□ 0.96
SFXN3-207ENST00000489434 PRG4Q92954 1404 aaPredicted RBP20.99■□□□□ 0.95
SFXN3-207ENST00000489434 JPH4Q96JJ6 628 aa20.99■□□□□ 0.95
SFXN3-207ENST00000489434 AEBP2Q6ZN18 517 aaPredicted RBP20.95■□□□□ 0.94
SFXN3-207ENST00000489434 RUSC2Q8N2Y8 1516 aa20.9■□□□□ 0.94
Retrieved 100 of 20,778 RNA–protein pairs in 111.2 ms