RNA–Protein interactions for RNA: ENST00000489318.1

C9orf3-220, Transcript of chromosome 9 open reading frame 3, humanhuman

TSL 3

Gene C9orf3, Length 682 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
C9orf3-220ENST00000489318 NISCHQ9Y2I1 1504 aa26.8■■□□□ 1.88
C9orf3-220ENST00000489318 CCDC180Q9P1Z9 1646 aa23.63■■□□□ 1.37
C9orf3-220ENST00000489318 ZCCHC6Q5VYS8 1495 aaKnown RBP22.54■■□□□ 1.2
C9orf3-220ENST00000489318 DCAF1Q9Y4B6 1507 aa22.29■■□□□ 1.16
C9orf3-220ENST00000489318 ABCC9O60706 1549 aa22.21■■□□□ 1.15
C9orf3-220ENST00000489318 MYO15BQ96JP2 1530 aa22.12■■□□□ 1.13
C9orf3-220ENST00000489318 NACADO15069 1562 aa21.95■■□□□ 1.11
C9orf3-220ENST00000489318 RB1CC1Q8TDY2 1594 aa21.79■■□□□ 1.08
C9orf3-220ENST00000489318 DCAF8L2P0C7V8 631 aa21.79■■□□□ 1.08
C9orf3-220ENST00000489318 SCRIBQ14160 1630 aa21.5■■□□□ 1.03
C9orf3-220ENST00000489318 SHROOM4Q9ULL8 1493 aa21.44■■□□□ 1.02
C9orf3-220ENST00000489318 UNC13AQ9UPW8 1703 aa21.42■■□□□ 1.02
C9orf3-220ENST00000489318 BICRAQ9NZM4 1560 aa21.15■□□□□ 0.98
C9orf3-220ENST00000489318 PABPN1Q86U42 306 aaKnown RBP eCLIP20.78■□□□□ 0.92
C9orf3-220ENST00000489318 CECR2Q9BXF3 1484 aa20.75■□□□□ 0.91
C9orf3-220ENST00000489318 BAZ1AQ9NRL2 1556 aaPredicted RBP20.74■□□□□ 0.91
C9orf3-220ENST00000489318 SMARCA4P51532 1647 aa20.69■□□□□ 0.9
C9orf3-220ENST00000489318 MROH2BQ7Z745 1585 aa20.66■□□□□ 0.9
C9orf3-220ENST00000489318 RSF1Q96T23 1441 aaPredicted RBP20.65■□□□□ 0.9
C9orf3-220ENST00000489318 PEG3Q9GZU2 1588 aa20.52■□□□□ 0.88
C9orf3-220ENST00000489318 EIF4G1Q04637 1599 aaKnown RBP20.5■□□□□ 0.87
C9orf3-220ENST00000489318 WIZO95785 1651 aa20.49■□□□□ 0.87
C9orf3-220ENST00000489318 SUPT5HO00267 1087 aaKnown RBP20.48■□□□□ 0.87
C9orf3-220ENST00000489318 SMARCA2P51531 1590 aa20.37■□□□□ 0.85
C9orf3-220ENST00000489318 TOP2AP11388 1531 aaKnown RBP20.34■□□□□ 0.85
C9orf3-220ENST00000489318 ATAD2BQ9ULI0 1458 aa20.32■□□□□ 0.84
C9orf3-220ENST00000489318 HMGXB3Q12766 1538 aa20.26■□□□□ 0.83
C9orf3-220ENST00000489318 CC2D2AQ9P2K1 1620 aa20.22■□□□□ 0.83
C9orf3-220ENST00000489318 NCAPD3P42695 1498 aa20.21■□□□□ 0.83
C9orf3-220ENST00000489318 BAZ1BQ9UIG0 1483 aaKnown RBP20.18■□□□□ 0.82
C9orf3-220ENST00000489318 CCDC88BA6NC98 1476 aa20.02■□□□□ 0.8
C9orf3-220ENST00000489318 PRDM2Q13029 1718 aa19.77■□□□□ 0.76
C9orf3-220ENST00000489318 CFTRP13569 1480 aa19.71■□□□□ 0.75
C9orf3-220ENST00000489318 DNAJC5BQ9UF47 199 aa19.67■□□□□ 0.74
C9orf3-220ENST00000489318 CHIC1Q5VXU3 224 aa19.62■□□□□ 0.73
C9orf3-220ENST00000489318 CADPSQ9ULU8 1353 aa19.61■□□□□ 0.73
C9orf3-220ENST00000489318 LAMC3Q9Y6N6 1575 aa19.61■□□□□ 0.73
C9orf3-220ENST00000489318 ABCC8Q09428 1581 aa19.53■□□□□ 0.72
C9orf3-220ENST00000489318 NESP48681 1621 aa19.47■□□□□ 0.71
C9orf3-220ENST00000489318 BIVM-ERCC5R4GMW8 1640 aa19.44■□□□□ 0.7
C9orf3-220ENST00000489318 WRNQ14191 1432 aaPredicted RBP eCLIP19.44■□□□□ 0.7
C9orf3-220ENST00000489318 SYNJ1O43426 1573 aa19.44■□□□□ 0.7
C9orf3-220ENST00000489318 TOP2BQ02880 1626 aa19.41■□□□□ 0.7
C9orf3-220ENST00000489318 FANCD2Q9BXW9 1451 aa19.41■□□□□ 0.7
C9orf3-220ENST00000489318 KIF21AQ7Z4S6 1674 aa19.36■□□□□ 0.69
C9orf3-220ENST00000489318 CUX1P39880 1505 aa19.35■□□□□ 0.69
C9orf3-220ENST00000489318 PDS5BQ9NTI5 1447 aa19.34■□□□□ 0.69
C9orf3-220ENST00000489318 TRIM41Q8WV44 630 aa19.34■□□□□ 0.69
C9orf3-220ENST00000489318 CEP164Q9UPV0 1460 aa19.33■□□□□ 0.68
C9orf3-220ENST00000489318 DNMBPQ6XZF7 1577 aa19.29■□□□□ 0.68
C9orf3-220ENST00000489318 URB2Q14146 1524 aaKnown RBP19.2■□□□□ 0.66
C9orf3-220ENST00000489318 TOPBP1Q92547 1522 aa19.2■□□□□ 0.66
C9orf3-220ENST00000489318 MRC2Q9UBG0 1479 aa19.16■□□□□ 0.66
C9orf3-220ENST00000489318 FGD5Q6ZNL6 1462 aa19.15■□□□□ 0.66
C9orf3-220ENST00000489318 THOC2Q8NI27 1593 aaKnown RBP19.15■□□□□ 0.66
C9orf3-220ENST00000489318 WDR62O43379 1518 aa19.14■□□□□ 0.65
C9orf3-220ENST00000489318 EEA1Q15075 1411 aa19.13■□□□□ 0.65
C9orf3-220ENST00000489318 WDR97A6NE52 1622 aa19.11■□□□□ 0.65
C9orf3-220ENST00000489318 POLA1P09884 1462 aaPredicted RBP19.09■□□□□ 0.65
C9orf3-220ENST00000489318 SOGA1O94964 1423 aa19.08■□□□□ 0.64
C9orf3-220ENST00000489318 ERCC6Q03468 1493 aa19.07■□□□□ 0.64
C9orf3-220ENST00000489318 RUSC2Q8N2Y8 1516 aa19.02■□□□□ 0.64
C9orf3-220ENST00000489318 ABCA10Q8WWZ4 1543 aa19.02■□□□□ 0.64
C9orf3-220ENST00000489318 TARBP1Q13395 1621 aaKnown RBP19■□□□□ 0.63
C9orf3-220ENST00000489318 KIF27Q86VH2 1401 aa18.96■□□□□ 0.63
C9orf3-220ENST00000489318 KIF21BO75037 1637 aa18.95■□□□□ 0.62
C9orf3-220ENST00000489318 ABCA5Q8WWZ7 1642 aa18.95■□□□□ 0.62
C9orf3-220ENST00000489318 CUX2O14529 1486 aa18.95■□□□□ 0.62
C9orf3-220ENST00000489318 RAD54L2Q9Y4B4 1467 aa18.95■□□□□ 0.62
C9orf3-220ENST00000489318 IFT140Q96RY7 1462 aa18.9■□□□□ 0.62
C9orf3-220ENST00000489318 FAM9AQ8IZU1 332 aaPredicted RBP18.87■□□□□ 0.61
C9orf3-220ENST00000489318 CSRNP3Q8WYN3 585 aa18.86■□□□□ 0.61
C9orf3-220ENST00000489318 ERICH3Q5RHP9 1530 aa18.85■□□□□ 0.61
C9orf3-220ENST00000489318 PRXQ9BXM0 1461 aa18.84■□□□□ 0.61
C9orf3-220ENST00000489318 CUL7Q14999 1698 aa18.83■□□□□ 0.61
C9orf3-220ENST00000489318 PBRM1Q86U86 1689 aa18.82■□□□□ 0.6
C9orf3-220ENST00000489318 GOLGA3Q08378 1498 aa18.81■□□□□ 0.6
C9orf3-220ENST00000489318 GAPVD1Q14C86 1478 aa18.78■□□□□ 0.6
C9orf3-220ENST00000489318 EIF4G3O43432 1585 aaKnown RBP18.78■□□□□ 0.6
C9orf3-220ENST00000489318 IGF1RP08069 1367 aa18.77■□□□□ 0.6
C9orf3-220ENST00000489318 RAPGEF2Q9Y4G8 1499 aa18.74■□□□□ 0.59
C9orf3-220ENST00000489318 LOC105371045A0A1W2PR82 267 aa18.74■□□□□ 0.59
C9orf3-220ENST00000489318 ZNF608Q9ULD9 1512 aaPredicted RBP18.73■□□□□ 0.59
C9orf3-220ENST00000489318 TDRD9Q8NDG6 1382 aaKnown RBP18.72■□□□□ 0.59
C9orf3-220ENST00000489318 ADAMTS12P58397 1594 aa18.7■□□□□ 0.58
C9orf3-220ENST00000489318 GRIN2BQ13224 1484 aa18.69■□□□□ 0.58
C9orf3-220ENST00000489318 TNIKQ9UKE5 1360 aa18.68■□□□□ 0.58
C9orf3-220ENST00000489318 AQRO60306 1485 aaKnown RBP eCLIP18.67■□□□□ 0.58
C9orf3-220ENST00000489318 CARMIL1Q5VZK9 1371 aa18.67■□□□□ 0.58
C9orf3-220ENST00000489318 CTTNBP2Q8WZ74 1663 aa18.6■□□□□ 0.57
C9orf3-220ENST00000489318 MAGI1Q96QZ7 1491 aaPredicted RBP18.6■□□□□ 0.57
C9orf3-220ENST00000489318 FHAD1B1AJZ9 1412 aa18.6■□□□□ 0.57
C9orf3-220ENST00000489318 SNAPC4Q5SXM2 1469 aa18.58■□□□□ 0.56
C9orf3-220ENST00000489318 CEP162Q5TB80 1403 aa18.56■□□□□ 0.56
C9orf3-220ENST00000489318 UBTFP17480 764 aaKnown RBP18.51■□□□□ 0.55
C9orf3-220ENST00000489318 EHMT2Q96KQ7 1210 aa18.51■□□□□ 0.55
C9orf3-220ENST00000489318 SYNJ2O15056 1496 aa18.51■□□□□ 0.55
C9orf3-220ENST00000489318 GRIN2AQ12879 1464 aa18.48■□□□□ 0.55
C9orf3-220ENST00000489318 CLIP1P30622 1438 aa18.45■□□□□ 0.54
C9orf3-220ENST00000489318 CHD1O14646 1710 aa18.41■□□□□ 0.54
Retrieved 100 of 20,778 RNA–protein pairs in 106.8 ms