RNA–Protein interactions for RNA: ENST00000489304.5

CD40-206, Transcript of CD40 molecule, humanhuman

TSL 5

Gene CD40, Length 1,733 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD40-206ENST00000489304 NISCHQ9Y2I1 1504 aa41.22■■■■■ 4.19
CD40-206ENST00000489304 CCDC180Q9P1Z9 1646 aa35.96■■■■□ 3.35
CD40-206ENST00000489304 ZCCHC6Q5VYS8 1495 aaKnown RBP34.57■■■■□ 3.12
CD40-206ENST00000489304 ABCC9O60706 1549 aa34.4■■■■□ 3.1
CD40-206ENST00000489304 DCAF8L2P0C7V8 631 aa34.22■■■■□ 3.07
CD40-206ENST00000489304 DCAF1Q9Y4B6 1507 aa34■■■■□ 3.03
CD40-206ENST00000489304 MYO15BQ96JP2 1530 aa33.67■■■□□ 2.98
CD40-206ENST00000489304 SHROOM4Q9ULL8 1493 aa33.58■■■□□ 2.97
CD40-206ENST00000489304 NACADO15069 1562 aa33.58■■■□□ 2.97
CD40-206ENST00000489304 RB1CC1Q8TDY2 1594 aa33.36■■■□□ 2.93
CD40-206ENST00000489304 SCRIBQ14160 1630 aa33.16■■■□□ 2.9
CD40-206ENST00000489304 UNC13AQ9UPW8 1703 aa32.7■■■□□ 2.83
CD40-206ENST00000489304 PABPN1Q86U42 306 aaKnown RBP eCLIP32.45■■■□□ 2.78
CD40-206ENST00000489304 BICRAQ9NZM4 1560 aa32.44■■■□□ 2.78
CD40-206ENST00000489304 SUPT5HO00267 1087 aaKnown RBP32.15■■■□□ 2.74
CD40-206ENST00000489304 CECR2Q9BXF3 1484 aa32.14■■■□□ 2.74
CD40-206ENST00000489304 RSF1Q96T23 1441 aaPredicted RBP31.92■■■□□ 2.7
CD40-206ENST00000489304 MROH2BQ7Z745 1585 aa31.89■■■□□ 2.69
CD40-206ENST00000489304 BAZ1AQ9NRL2 1556 aaPredicted RBP31.8■■■□□ 2.68
CD40-206ENST00000489304 SMARCA4P51532 1647 aa31.72■■■□□ 2.67
CD40-206ENST00000489304 WIZO95785 1651 aa31.6■■■□□ 2.65
CD40-206ENST00000489304 EIF4G1Q04637 1599 aaKnown RBP31.45■■■□□ 2.63
CD40-206ENST00000489304 PEG3Q9GZU2 1588 aa31.31■■■□□ 2.6
CD40-206ENST00000489304 ATAD2BQ9ULI0 1458 aa31.3■■■□□ 2.6
CD40-206ENST00000489304 TOP2AP11388 1531 aaKnown RBP31.22■■■□□ 2.59
CD40-206ENST00000489304 SMARCA2P51531 1590 aa31.2■■■□□ 2.58
CD40-206ENST00000489304 BAZ1BQ9UIG0 1483 aaKnown RBP31.08■■■□□ 2.57
CD40-206ENST00000489304 CC2D2AQ9P2K1 1620 aa31.06■■■□□ 2.56
CD40-206ENST00000489304 NCAPD3P42695 1498 aa31.04■■■□□ 2.56
CD40-206ENST00000489304 CCDC88BA6NC98 1476 aa30.95■■■□□ 2.54
CD40-206ENST00000489304 HMGXB3Q12766 1538 aa30.94■■■□□ 2.54
CD40-206ENST00000489304 CHIC1Q5VXU3 224 aa30.76■■■□□ 2.52
CD40-206ENST00000489304 DNAJC5BQ9UF47 199 aa30.65■■■□□ 2.5
CD40-206ENST00000489304 CFTRP13569 1480 aa30.28■■■□□ 2.44
CD40-206ENST00000489304 CADPSQ9ULU8 1353 aa30.25■■■□□ 2.43
CD40-206ENST00000489304 ABCC8Q09428 1581 aa30.23■■■□□ 2.43
CD40-206ENST00000489304 TRIM41Q8WV44 630 aa30.19■■■□□ 2.42
CD40-206ENST00000489304 NESP48681 1621 aa30.14■■■□□ 2.42
CD40-206ENST00000489304 WRNQ14191 1432 aaPredicted RBP eCLIP30.02■■■□□ 2.4
CD40-206ENST00000489304 PRDM2Q13029 1718 aa30.01■■■□□ 2.4
CD40-206ENST00000489304 LAMC3Q9Y6N6 1575 aa29.98■■■□□ 2.39
CD40-206ENST00000489304 SYNJ1O43426 1573 aa29.94■■■□□ 2.38
CD40-206ENST00000489304 FANCD2Q9BXW9 1451 aa29.92■■■□□ 2.38
CD40-206ENST00000489304 CUX1P39880 1505 aa29.82■■■□□ 2.36
CD40-206ENST00000489304 PDS5BQ9NTI5 1447 aa29.78■■■□□ 2.36
CD40-206ENST00000489304 TOP2BQ02880 1626 aa29.77■■■□□ 2.36
CD40-206ENST00000489304 BIVM-ERCC5R4GMW8 1640 aa29.74■■■□□ 2.35
CD40-206ENST00000489304 CEP164Q9UPV0 1460 aa29.73■■■□□ 2.35
CD40-206ENST00000489304 FAM9AQ8IZU1 332 aaPredicted RBP29.73■■■□□ 2.35
CD40-206ENST00000489304 KIF21AQ7Z4S6 1674 aa29.69■■■□□ 2.34
CD40-206ENST00000489304 SOGA1O94964 1423 aa29.63■■■□□ 2.33
CD40-206ENST00000489304 URB2Q14146 1524 aaKnown RBP29.59■■■□□ 2.33
CD40-206ENST00000489304 RUSC2Q8N2Y8 1516 aa29.58■■■□□ 2.33
CD40-206ENST00000489304 DNMBPQ6XZF7 1577 aa29.57■■■□□ 2.32
CD40-206ENST00000489304 TOPBP1Q92547 1522 aa29.57■■■□□ 2.32
CD40-206ENST00000489304 LOC105371045A0A1W2PR82 267 aa29.54■■■□□ 2.32
CD40-206ENST00000489304 FGD5Q6ZNL6 1462 aa29.52■■■□□ 2.32
CD40-206ENST00000489304 EEA1Q15075 1411 aa29.52■■■□□ 2.32
CD40-206ENST00000489304 ERCC6Q03468 1493 aa29.45■■■□□ 2.3
CD40-206ENST00000489304 MRC2Q9UBG0 1479 aa29.44■■■□□ 2.3
CD40-206ENST00000489304 POLA1P09884 1462 aaPredicted RBP29.41■■■□□ 2.3
CD40-206ENST00000489304 EHMT2Q96KQ7 1210 aa29.37■■■□□ 2.29
CD40-206ENST00000489304 RAD54L2Q9Y4B4 1467 aa29.37■■■□□ 2.29
CD40-206ENST00000489304 CSRNP3Q8WYN3 585 aa29.35■■■□□ 2.29
CD40-206ENST00000489304 CUX2O14529 1486 aa29.28■■■□□ 2.28
CD40-206ENST00000489304 WDR62O43379 1518 aa29.28■■■□□ 2.28
CD40-206ENST00000489304 THOC2Q8NI27 1593 aaKnown RBP29.27■■■□□ 2.28
CD40-206ENST00000489304 KIF27Q86VH2 1401 aa29.26■■■□□ 2.27
CD40-206ENST00000489304 ABCA10Q8WWZ4 1543 aa29.22■■■□□ 2.27
CD40-206ENST00000489304 KIF21BO75037 1637 aa29.16■■■□□ 2.26
CD40-206ENST00000489304 TARBP1Q13395 1621 aaKnown RBP29.14■■■□□ 2.25
CD40-206ENST00000489304 WDR97A6NE52 1622 aa29.13■■■□□ 2.25
CD40-206ENST00000489304 TDRD9Q8NDG6 1382 aaKnown RBP29.1■■■□□ 2.25
CD40-206ENST00000489304 IGF1RP08069 1367 aa29.09■■■□□ 2.25
CD40-206ENST00000489304 GOLGA3Q08378 1498 aa29.08■■■□□ 2.25
CD40-206ENST00000489304 IFT140Q96RY7 1462 aa29.03■■■□□ 2.24
CD40-206ENST00000489304 PRXQ9BXM0 1461 aa29.02■■■□□ 2.24
CD40-206ENST00000489304 RAPGEF2Q9Y4G8 1499 aa29.01■■■□□ 2.24
CD40-206ENST00000489304 TNIKQ9UKE5 1360 aa29■■■□□ 2.23
CD40-206ENST00000489304 ABCA5Q8WWZ7 1642 aa29■■■□□ 2.23
CD40-206ENST00000489304 GAPVD1Q14C86 1478 aa28.97■■■□□ 2.23
CD40-206ENST00000489304 ZNF608Q9ULD9 1512 aaPredicted RBP28.96■■■□□ 2.23
CD40-206ENST00000489304 ERICH3Q5RHP9 1530 aa28.96■■■□□ 2.23
CD40-206ENST00000489304 AQRO60306 1485 aaKnown RBP eCLIP28.96■■■□□ 2.23
CD40-206ENST00000489304 UBTFP17480 764 aaKnown RBP28.95■■■□□ 2.23
CD40-206ENST00000489304 CARMIL1Q5VZK9 1371 aa28.92■■■□□ 2.22
CD40-206ENST00000489304 CEP162Q5TB80 1403 aa28.82■■■□□ 2.2
CD40-206ENST00000489304 PBRM1Q86U86 1689 aa28.79■■■□□ 2.2
CD40-206ENST00000489304 EIF4G3O43432 1585 aaKnown RBP28.79■■■□□ 2.2
CD40-206ENST00000489304 CUL7Q14999 1698 aa28.77■■■□□ 2.2
CD40-206ENST00000489304 GRIN2BQ13224 1484 aa28.77■■■□□ 2.2
CD40-206ENST00000489304 RANGAP1P46060 587 aaPredicted RBP28.66■■■□□ 2.18
CD40-206ENST00000489304 SNAPC4Q5SXM2 1469 aa28.66■■■□□ 2.18
CD40-206ENST00000489304 ADAMTS12P58397 1594 aa28.64■■■□□ 2.18
CD40-206ENST00000489304 FHAD1B1AJZ9 1412 aa28.64■■■□□ 2.18
CD40-206ENST00000489304 CLIP1P30622 1438 aa28.6■■■□□ 2.17
CD40-206ENST00000489304 MAGI1Q96QZ7 1491 aaPredicted RBP28.52■■■□□ 2.16
CD40-206ENST00000489304 SYNJ2O15056 1496 aa28.44■■■□□ 2.14
CD40-206ENST00000489304 CTTNBP2Q8WZ74 1663 aa28.43■■■□□ 2.14
CD40-206ENST00000489304 CHMP7Q8WUX9 453 aaPredicted RBP28.43■■■□□ 2.14
Retrieved 100 of 20,778 RNA–protein pairs in 84 ms