RNA–Protein interactions for RNA: ENST00000489283.5

PLS3-207, Transcript of plastin 3, humanhuman

TSL 1 (best)

Gene PLS3, Length 926 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PLS3-207ENST00000489283 NISCHQ9Y2I1 1504 aa35.11■■■■□ 3.21
PLS3-207ENST00000489283 CCDC180Q9P1Z9 1646 aa31.53■■■□□ 2.64
PLS3-207ENST00000489283 ABCC9O60706 1549 aa31.24■■■□□ 2.59
PLS3-207ENST00000489283 RB1CC1Q8TDY2 1594 aa29.86■■■□□ 2.37
PLS3-207ENST00000489283 NACADO15069 1562 aa29.69■■■□□ 2.34
PLS3-207ENST00000489283 DCAF8L2P0C7V8 631 aa29.43■■■□□ 2.3
PLS3-207ENST00000489283 MYO15BQ96JP2 1530 aa29.32■■■□□ 2.28
PLS3-207ENST00000489283 UNC13AQ9UPW8 1703 aa29.31■■■□□ 2.28
PLS3-207ENST00000489283 ZCCHC6Q5VYS8 1495 aaKnown RBP29.17■■■□□ 2.26
PLS3-207ENST00000489283 DNAJC5BQ9UF47 199 aa29.05■■■□□ 2.24
PLS3-207ENST00000489283 PABPN1Q86U42 306 aaKnown RBP eCLIP29.04■■■□□ 2.24
PLS3-207ENST00000489283 DCAF1Q9Y4B6 1507 aa29.03■■■□□ 2.24
PLS3-207ENST00000489283 BICRAQ9NZM4 1560 aa29■■■□□ 2.23
PLS3-207ENST00000489283 SCRIBQ14160 1630 aa28.71■■■□□ 2.19
PLS3-207ENST00000489283 SHROOM4Q9ULL8 1493 aa28.6■■■□□ 2.17
PLS3-207ENST00000489283 CC2D2AQ9P2K1 1620 aa28.28■■■□□ 2.12
PLS3-207ENST00000489283 EIF4G1Q04637 1599 aaKnown RBP28.26■■■□□ 2.11
PLS3-207ENST00000489283 CECR2Q9BXF3 1484 aa28.11■■■□□ 2.09
PLS3-207ENST00000489283 SMARCA4P51532 1647 aa27.41■■□□□ 1.98
PLS3-207ENST00000489283 NCAPD3P42695 1498 aa27.35■■□□□ 1.97
PLS3-207ENST00000489283 ATAD2BQ9ULI0 1458 aa27.32■■□□□ 1.96
PLS3-207ENST00000489283 SMARCA2P51531 1590 aa27.28■■□□□ 1.96
PLS3-207ENST00000489283 BAZ1AQ9NRL2 1556 aaPredicted RBP27.26■■□□□ 1.96
PLS3-207ENST00000489283 HMGXB3Q12766 1538 aa27.24■■□□□ 1.95
PLS3-207ENST00000489283 PEG3Q9GZU2 1588 aa27.13■■□□□ 1.93
PLS3-207ENST00000489283 BAZ1BQ9UIG0 1483 aaKnown RBP27.08■■□□□ 1.93
PLS3-207ENST00000489283 MROH2BQ7Z745 1585 aa27.06■■□□□ 1.92
PLS3-207ENST00000489283 ERCC6Q03468 1493 aa26.95■■□□□ 1.91
PLS3-207ENST00000489283 NESP48681 1621 aa26.9■■□□□ 1.9
PLS3-207ENST00000489283 CUX2O14529 1486 aa26.85■■□□□ 1.89
PLS3-207ENST00000489283 WIZO95785 1651 aa26.8■■□□□ 1.88
PLS3-207ENST00000489283 LAMC3Q9Y6N6 1575 aa26.77■■□□□ 1.88
PLS3-207ENST00000489283 THOC2Q8NI27 1593 aaKnown RBP26.67■■□□□ 1.86
PLS3-207ENST00000489283 KIF21AQ7Z4S6 1674 aa26.66■■□□□ 1.86
PLS3-207ENST00000489283 RSF1Q96T23 1441 aaPredicted RBP26.53■■□□□ 1.84
PLS3-207ENST00000489283 PDS5BQ9NTI5 1447 aa26.53■■□□□ 1.84
PLS3-207ENST00000489283 DNAJC5Q9H3Z4 198 aa26.51■■□□□ 1.83
PLS3-207ENST00000489283 CADPSQ9ULU8 1353 aa26.5■■□□□ 1.83
PLS3-207ENST00000489283 TOP2AP11388 1531 aaKnown RBP26.46■■□□□ 1.83
PLS3-207ENST00000489283 MRC2Q9UBG0 1479 aa26.35■■□□□ 1.81
PLS3-207ENST00000489283 WDR62O43379 1518 aa26.31■■□□□ 1.8
PLS3-207ENST00000489283 CEP164Q9UPV0 1460 aa26.29■■□□□ 1.8
PLS3-207ENST00000489283 CFTRP13569 1480 aa26.28■■□□□ 1.8
PLS3-207ENST00000489283 FANCD2Q9BXW9 1451 aa26.25■■□□□ 1.79
PLS3-207ENST00000489283 PRDM2Q13029 1718 aa26.22■■□□□ 1.79
PLS3-207ENST00000489283 CCDC88BA6NC98 1476 aa26.1■■□□□ 1.77
PLS3-207ENST00000489283 URB2Q14146 1524 aaKnown RBP26.04■■□□□ 1.76
PLS3-207ENST00000489283 TOPBP1Q92547 1522 aa25.8■■□□□ 1.72
PLS3-207ENST00000489283 DNMBPQ6XZF7 1577 aa25.75■■□□□ 1.71
PLS3-207ENST00000489283 IFT140Q96RY7 1462 aa25.72■■□□□ 1.71
PLS3-207ENST00000489283 ABCC8Q09428 1581 aa25.72■■□□□ 1.71
PLS3-207ENST00000489283 ZNF608Q9ULD9 1512 aaPredicted RBP25.68■■□□□ 1.7
PLS3-207ENST00000489283 EIF4G3O43432 1585 aaKnown RBP25.63■■□□□ 1.69
PLS3-207ENST00000489283 TARBP1Q13395 1621 aaKnown RBP25.59■■□□□ 1.69
PLS3-207ENST00000489283 OSCARQ8IYS5 282 aa25.55■■□□□ 1.68
PLS3-207ENST00000489283 POLA1P09884 1462 aaPredicted RBP25.54■■□□□ 1.68
PLS3-207ENST00000489283 TRIM41Q8WV44 630 aa25.46■■□□□ 1.67
PLS3-207ENST00000489283 SUPT5HO00267 1087 aaKnown RBP25.44■■□□□ 1.66
PLS3-207ENST00000489283 AQRO60306 1485 aaKnown RBP eCLIP25.44■■□□□ 1.66
PLS3-207ENST00000489283 CHD1O14646 1710 aa25.43■■□□□ 1.66
PLS3-207ENST00000489283 CUX1P39880 1505 aa25.43■■□□□ 1.66
PLS3-207ENST00000489283 RAD54L2Q9Y4B4 1467 aa25.42■■□□□ 1.66
PLS3-207ENST00000489283 FGD5Q6ZNL6 1462 aa25.41■■□□□ 1.66
PLS3-207ENST00000489283 SOGA1O94964 1423 aa25.37■■□□□ 1.65
PLS3-207ENST00000489283 RIMBP3CA6NJZ7 1639 aa25.36■■□□□ 1.65
PLS3-207ENST00000489283 RIMBP3BA6NNM3 1639 aa25.36■■□□□ 1.65
PLS3-207ENST00000489283 RIMBP3Q9UFD9 1639 aa25.36■■□□□ 1.65
PLS3-207ENST00000489283 WDR97A6NE52 1622 aa25.35■■□□□ 1.65
PLS3-207ENST00000489283 TDRD9Q8NDG6 1382 aaKnown RBP25.29■■□□□ 1.64
PLS3-207ENST00000489283 ARHGEF11O15085 1522 aa25.27■■□□□ 1.64
PLS3-207ENST00000489283 SNAPC4Q5SXM2 1469 aa25.23■■□□□ 1.63
PLS3-207ENST00000489283 PBRM1Q86U86 1689 aa25.22■■□□□ 1.63
PLS3-207ENST00000489283 FBLN2P98095 1184 aa25.18■■□□□ 1.62
PLS3-207ENST00000489283 GRIN2BQ13224 1484 aa25.16■■□□□ 1.62
PLS3-207ENST00000489283 MAGI1Q96QZ7 1491 aaPredicted RBP25.16■■□□□ 1.62
PLS3-207ENST00000489283 ABCA5Q8WWZ7 1642 aa25.15■■□□□ 1.62
PLS3-207ENST00000489283 BIVM-ERCC5R4GMW8 1640 aa25.13■■□□□ 1.61
PLS3-207ENST00000489283 ABCA10Q8WWZ4 1543 aa25.12■■□□□ 1.61
PLS3-207ENST00000489283 GAPVD1Q14C86 1478 aa25.1■■□□□ 1.61
PLS3-207ENST00000489283 TOP2BQ02880 1626 aa25.09■■□□□ 1.61
PLS3-207ENST00000489283 CLASP1Q7Z460 1538 aa25.08■■□□□ 1.61
PLS3-207ENST00000489283 SYNJ1O43426 1573 aa25.08■■□□□ 1.61
PLS3-207ENST00000489283 SYNJ2O15056 1496 aa25.07■■□□□ 1.6
PLS3-207ENST00000489283 WRNQ14191 1432 aaPredicted RBP eCLIP25.03■■□□□ 1.6
PLS3-207ENST00000489283 ARAP1Q96P48 1450 aa25.02■■□□□ 1.6
PLS3-207ENST00000489283 CHMP7Q8WUX9 453 aaPredicted RBP25.02■■□□□ 1.6
PLS3-207ENST00000489283 CYB5RLQ6IPT4 315 aa24.95■■□□□ 1.58
PLS3-207ENST00000489283 ADAMTS12P58397 1594 aa24.94■■□□□ 1.58
PLS3-207ENST00000489283 GRIN2AQ12879 1464 aa24.87■■□□□ 1.57
PLS3-207ENST00000489283 ERICH3Q5RHP9 1530 aa24.83■■□□□ 1.57
PLS3-207ENST00000489283 CEP170Q5SW79 1584 aa24.81■■□□□ 1.56
PLS3-207ENST00000489283 FHAD1B1AJZ9 1412 aa24.78■■□□□ 1.56
PLS3-207ENST00000489283 NUP160Q12769 1436 aa24.76■■□□□ 1.55
PLS3-207ENST00000489283 ERCC6L2Q5T890 1561 aa24.71■■□□□ 1.55
PLS3-207ENST00000489283 SHROOM2Q13796 1616 aa24.7■■□□□ 1.54
PLS3-207ENST00000489283 TRHP20396 242 aaPredicted RBP24.62■■□□□ 1.53
PLS3-207ENST00000489283 RUSC2Q8N2Y8 1516 aa24.6■■□□□ 1.53
PLS3-207ENST00000489283 CUL7Q14999 1698 aa24.56■■□□□ 1.52
PLS3-207ENST00000489283 KIF27Q86VH2 1401 aa24.53■■□□□ 1.52
PLS3-207ENST00000489283 PRG4Q92954 1404 aaPredicted RBP24.48■■□□□ 1.51
Retrieved 100 of 20,778 RNA–protein pairs in 8.2 ms