RNA–Protein interactions for RNA: ENST00000489261.1

ITSN1-231, Transcript of intersectin 1, humanhuman

TSL 1 (best)

Gene ITSN1, Length 1,108 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ITSN1-231ENST00000489261 NISCHQ9Y2I1 1504 aa23.99■■□□□ 1.43
ITSN1-231ENST00000489261 CCDC180Q9P1Z9 1646 aa21.49■■□□□ 1.03
ITSN1-231ENST00000489261 ABCC9O60706 1549 aa21.05■□□□□ 0.96
ITSN1-231ENST00000489261 RB1CC1Q8TDY2 1594 aa20.25■□□□□ 0.83
ITSN1-231ENST00000489261 NACADO15069 1562 aa20.18■□□□□ 0.82
ITSN1-231ENST00000489261 MYO15BQ96JP2 1530 aa20.04■□□□□ 0.8
ITSN1-231ENST00000489261 ZCCHC6Q5VYS8 1495 aaKnown RBP20.04■□□□□ 0.8
ITSN1-231ENST00000489261 DCAF8L2P0C7V8 631 aa19.91■□□□□ 0.78
ITSN1-231ENST00000489261 UNC13AQ9UPW8 1703 aa19.9■□□□□ 0.78
ITSN1-231ENST00000489261 DCAF1Q9Y4B6 1507 aa19.88■□□□□ 0.77
ITSN1-231ENST00000489261 BICRAQ9NZM4 1560 aa19.67■□□□□ 0.74
ITSN1-231ENST00000489261 PABPN1Q86U42 306 aaKnown RBP eCLIP19.57■□□□□ 0.72
ITSN1-231ENST00000489261 SCRIBQ14160 1630 aa19.51■□□□□ 0.71
ITSN1-231ENST00000489261 SHROOM4Q9ULL8 1493 aa19.48■□□□□ 0.71
ITSN1-231ENST00000489261 DNAJC5BQ9UF47 199 aa19.45■□□□□ 0.7
ITSN1-231ENST00000489261 EIF4G1Q04637 1599 aaKnown RBP19.14■□□□□ 0.65
ITSN1-231ENST00000489261 CC2D2AQ9P2K1 1620 aa19.11■□□□□ 0.65
ITSN1-231ENST00000489261 SUPT5HO00267 1087 aaKnown RBP18.95■□□□□ 0.62
ITSN1-231ENST00000489261 CECR2Q9BXF3 1484 aa18.95■□□□□ 0.62
ITSN1-231ENST00000489261 SMARCA4P51532 1647 aa18.68■□□□□ 0.58
ITSN1-231ENST00000489261 BAZ1AQ9NRL2 1556 aaPredicted RBP18.61■□□□□ 0.57
ITSN1-231ENST00000489261 NCAPD3P42695 1498 aa18.59■□□□□ 0.57
ITSN1-231ENST00000489261 ATAD2BQ9ULI0 1458 aa18.58■□□□□ 0.56
ITSN1-231ENST00000489261 RSF1Q96T23 1441 aaPredicted RBP18.57■□□□□ 0.56
ITSN1-231ENST00000489261 SMARCA2P51531 1590 aa18.57■□□□□ 0.56
ITSN1-231ENST00000489261 HMGXB3Q12766 1538 aa18.54■□□□□ 0.56
ITSN1-231ENST00000489261 PEG3Q9GZU2 1588 aa18.53■□□□□ 0.56
ITSN1-231ENST00000489261 MROH2BQ7Z745 1585 aa18.47■□□□□ 0.55
ITSN1-231ENST00000489261 BAZ1BQ9UIG0 1483 aaKnown RBP18.39■□□□□ 0.54
ITSN1-231ENST00000489261 CHIC1Q5VXU3 224 aa18.34■□□□□ 0.53
ITSN1-231ENST00000489261 WIZO95785 1651 aa18.3■□□□□ 0.52
ITSN1-231ENST00000489261 NESP48681 1621 aa18.19■□□□□ 0.5
ITSN1-231ENST00000489261 LAMC3Q9Y6N6 1575 aa18.17■□□□□ 0.5
ITSN1-231ENST00000489261 ERCC6Q03468 1493 aa18.14■□□□□ 0.5
ITSN1-231ENST00000489261 TOP2AP11388 1531 aaKnown RBP18.08■□□□□ 0.49
ITSN1-231ENST00000489261 CUX2O14529 1486 aa18.08■□□□□ 0.49
ITSN1-231ENST00000489261 KIF21AQ7Z4S6 1674 aa18.06■□□□□ 0.48
ITSN1-231ENST00000489261 THOC2Q8NI27 1593 aaKnown RBP18.04■□□□□ 0.48
ITSN1-231ENST00000489261 CADPSQ9ULU8 1353 aa18.01■□□□□ 0.47
ITSN1-231ENST00000489261 PDS5BQ9NTI5 1447 aa17.98■□□□□ 0.47
ITSN1-231ENST00000489261 CCDC88BA6NC98 1476 aa17.91■□□□□ 0.46
ITSN1-231ENST00000489261 CFTRP13569 1480 aa17.91■□□□□ 0.46
ITSN1-231ENST00000489261 PRDM2Q13029 1718 aa17.9■□□□□ 0.46
ITSN1-231ENST00000489261 TRIM41Q8WV44 630 aa17.89■□□□□ 0.45
ITSN1-231ENST00000489261 MRC2Q9UBG0 1479 aa17.84■□□□□ 0.45
ITSN1-231ENST00000489261 WDR62O43379 1518 aa17.83■□□□□ 0.45
ITSN1-231ENST00000489261 FANCD2Q9BXW9 1451 aa17.82■□□□□ 0.44
ITSN1-231ENST00000489261 CEP164Q9UPV0 1460 aa17.82■□□□□ 0.44
ITSN1-231ENST00000489261 URB2Q14146 1524 aaKnown RBP17.67■□□□□ 0.42
ITSN1-231ENST00000489261 DNAJC5Q9H3Z4 198 aa17.65■□□□□ 0.42
ITSN1-231ENST00000489261 LOC105371045A0A1W2PR82 267 aa17.57■□□□□ 0.4
ITSN1-231ENST00000489261 TOPBP1Q92547 1522 aa17.54■□□□□ 0.4
ITSN1-231ENST00000489261 DNMBPQ6XZF7 1577 aa17.53■□□□□ 0.4
ITSN1-231ENST00000489261 ABCC8Q09428 1581 aa17.52■□□□□ 0.39
ITSN1-231ENST00000489261 WRNQ14191 1432 aaPredicted RBP eCLIP17.49■□□□□ 0.39
ITSN1-231ENST00000489261 EEA1Q15075 1411 aa17.48■□□□□ 0.39
ITSN1-231ENST00000489261 IFT140Q96RY7 1462 aa17.46■□□□□ 0.39
ITSN1-231ENST00000489261 FAM9AQ8IZU1 332 aaPredicted RBP17.45■□□□□ 0.38
ITSN1-231ENST00000489261 TARBP1Q13395 1621 aaKnown RBP17.41■□□□□ 0.38
ITSN1-231ENST00000489261 ZNF608Q9ULD9 1512 aaPredicted RBP17.39■□□□□ 0.37
ITSN1-231ENST00000489261 POLA1P09884 1462 aaPredicted RBP17.37■□□□□ 0.37
ITSN1-231ENST00000489261 EIF4G3O43432 1585 aaKnown RBP17.37■□□□□ 0.37
ITSN1-231ENST00000489261 CUX1P39880 1505 aa17.35■□□□□ 0.37
ITSN1-231ENST00000489261 CSRNP3Q8WYN3 585 aa17.33■□□□□ 0.36
ITSN1-231ENST00000489261 SYNJ1O43426 1573 aa17.3■□□□□ 0.36
ITSN1-231ENST00000489261 FGD5Q6ZNL6 1462 aa17.3■□□□□ 0.36
ITSN1-231ENST00000489261 SOGA1O94964 1423 aa17.29■□□□□ 0.36
ITSN1-231ENST00000489261 WDR97A6NE52 1622 aa17.29■□□□□ 0.36
ITSN1-231ENST00000489261 TOP2BQ02880 1626 aa17.29■□□□□ 0.36
ITSN1-231ENST00000489261 RAD54L2Q9Y4B4 1467 aa17.26■□□□□ 0.35
ITSN1-231ENST00000489261 BIVM-ERCC5R4GMW8 1640 aa17.25■□□□□ 0.35
ITSN1-231ENST00000489261 AQRO60306 1485 aaKnown RBP eCLIP17.24■□□□□ 0.35
ITSN1-231ENST00000489261 CHD1O14646 1710 aa17.22■□□□□ 0.35
ITSN1-231ENST00000489261 TNIKQ9UKE5 1360 aa17.2■□□□□ 0.34
ITSN1-231ENST00000489261 OSCARQ8IYS5 282 aa17.2■□□□□ 0.34
ITSN1-231ENST00000489261 RUSC2Q8N2Y8 1516 aa17.16■□□□□ 0.34
ITSN1-231ENST00000489261 PBRM1Q86U86 1689 aa17.16■□□□□ 0.34
ITSN1-231ENST00000489261 TDRD9Q8NDG6 1382 aaKnown RBP17.15■□□□□ 0.34
ITSN1-231ENST00000489261 GOLGA3Q08378 1498 aa17.15■□□□□ 0.34
ITSN1-231ENST00000489261 ABCA10Q8WWZ4 1543 aa17.15■□□□□ 0.34
ITSN1-231ENST00000489261 ABCA5Q8WWZ7 1642 aa17.14■□□□□ 0.33
ITSN1-231ENST00000489261 KIF21BO75037 1637 aa17.11■□□□□ 0.33
ITSN1-231ENST00000489261 TRIM26Q12899 539 aaPredicted RBP17.11■□□□□ 0.33
ITSN1-231ENST00000489261 SNAPC4Q5SXM2 1469 aa17.11■□□□□ 0.33
ITSN1-231ENST00000489261 EHMT2Q96KQ7 1210 aa17.1■□□□□ 0.33
ITSN1-231ENST00000489261 GRIN2BQ13224 1484 aa17.1■□□□□ 0.33
ITSN1-231ENST00000489261 MAGI1Q96QZ7 1491 aaPredicted RBP17.1■□□□□ 0.33
ITSN1-231ENST00000489261 UBTFP17480 764 aaKnown RBP17.09■□□□□ 0.33
ITSN1-231ENST00000489261 RIMBP3CA6NJZ7 1639 aa17.07■□□□□ 0.32
ITSN1-231ENST00000489261 RIMBP3BA6NNM3 1639 aa17.07■□□□□ 0.32
ITSN1-231ENST00000489261 RIMBP3Q9UFD9 1639 aa17.07■□□□□ 0.32
ITSN1-231ENST00000489261 GAPVD1Q14C86 1478 aa17.07■□□□□ 0.32
ITSN1-231ENST00000489261 KIF27Q86VH2 1401 aa17.07■□□□□ 0.32
ITSN1-231ENST00000489261 PCGF6Q9BYE7 350 aa17.05■□□□□ 0.32
ITSN1-231ENST00000489261 CEP162Q5TB80 1403 aa17.03■□□□□ 0.32
ITSN1-231ENST00000489261 SYNJ2O15056 1496 aa17.02■□□□□ 0.32
ITSN1-231ENST00000489261 ARHGEF11O15085 1522 aa17.01■□□□□ 0.31
ITSN1-231ENST00000489261 CLASP1Q7Z460 1538 aa17■□□□□ 0.31
ITSN1-231ENST00000489261 ERICH3Q5RHP9 1530 aa16.99■□□□□ 0.31
ITSN1-231ENST00000489261 PRXQ9BXM0 1461 aa16.99■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 14.3 ms