RNA–Protein interactions for RNA: ENST00000489212.2

LIME1-207, Transcript of Lck interacting transmembrane adaptor 1, humanhuman

TSL 5

Gene LIME1, Length 559 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1-207ENST00000489212 NISCHQ9Y2I1 1504 aa52.05■■■■■ 5.92
LIME1-207ENST00000489212 CCDC180Q9P1Z9 1646 aa46.36■■■■■ 5.01
LIME1-207ENST00000489212 ABCC9O60706 1549 aa45.72■■■■■ 4.91
LIME1-207ENST00000489212 RB1CC1Q8TDY2 1594 aa43.79■■■■■ 4.6
LIME1-207ENST00000489212 NACADO15069 1562 aa43.67■■■■■ 4.58
LIME1-207ENST00000489212 DCAF8L2P0C7V8 631 aa43.6■■■■■ 4.57
LIME1-207ENST00000489212 MYO15BQ96JP2 1530 aa43.3■■■■■ 4.52
LIME1-207ENST00000489212 ZCCHC6Q5VYS8 1495 aaKnown RBP43.3■■■■■ 4.52
LIME1-207ENST00000489212 DCAF1Q9Y4B6 1507 aa43.02■■■■■ 4.48
LIME1-207ENST00000489212 UNC13AQ9UPW8 1703 aa42.85■■■■■ 4.45
LIME1-207ENST00000489212 PABPN1Q86U42 306 aaKnown RBP eCLIP42.69■■■■■ 4.422e-15■■■□□ 16.7
LIME1-207ENST00000489212 BICRAQ9NZM4 1560 aa42.55■■■■■ 4.4
LIME1-207ENST00000489212 SCRIBQ14160 1630 aa42.34■■■■■ 4.37
LIME1-207ENST00000489212 DNAJC5BQ9UF47 199 aa42.3■■■■■ 4.36
LIME1-207ENST00000489212 SHROOM4Q9ULL8 1493 aa41.96■■■■■ 4.31
LIME1-207ENST00000489212 EIF4G1Q04637 1599 aaKnown RBP41.42■■■■■ 4.22
LIME1-207ENST00000489212 CC2D2AQ9P2K1 1620 aa41.33■■■■■ 4.21
LIME1-207ENST00000489212 CECR2Q9BXF3 1484 aa41.09■■■■■ 4.17
LIME1-207ENST00000489212 SMARCA4P51532 1647 aa40.45■■■■■ 4.07
LIME1-207ENST00000489212 BAZ1AQ9NRL2 1556 aaPredicted RBP40.33■■■■■ 4.05
LIME1-207ENST00000489212 NCAPD3P42695 1498 aa40.32■■■■■ 4.04
LIME1-207ENST00000489212 ATAD2BQ9ULI0 1458 aa40.32■■■■■ 4.04
LIME1-207ENST00000489212 SMARCA2P51531 1590 aa40.2■■■■■ 4.03
LIME1-207ENST00000489212 MROH2BQ7Z745 1585 aa40.14■■■■■ 4.02
LIME1-207ENST00000489212 HMGXB3Q12766 1538 aa40.08■■■■■ 4.01
LIME1-207ENST00000489212 PEG3Q9GZU2 1588 aa40.05■■■■■ 4
LIME1-207ENST00000489212 BAZ1BQ9UIG0 1483 aaKnown RBP39.94■■■■□ 3.98
LIME1-207ENST00000489212 WIZO95785 1651 aa39.69■■■■□ 3.94
LIME1-207ENST00000489212 RSF1Q96T23 1441 aaPredicted RBP39.56■■■■□ 3.92
LIME1-207ENST00000489212 NESP48681 1621 aa39.5■■■■□ 3.91
LIME1-207ENST00000489212 ERCC6Q03468 1493 aa39.37■■■■□ 3.89
LIME1-207ENST00000489212 LAMC3Q9Y6N6 1575 aa39.28■■■■□ 3.88
LIME1-207ENST00000489212 TOP2AP11388 1531 aaKnown RBP39.21■■■■□ 3.87
LIME1-207ENST00000489212 CADPSQ9ULU8 1353 aa39.13■■■■□ 3.85
LIME1-207ENST00000489212 CUX2O14529 1486 aa39.06■■■■□ 3.84
LIME1-207ENST00000489212 PDS5BQ9NTI5 1447 aa39.02■■■■□ 3.84
LIME1-207ENST00000489212 KIF21AQ7Z4S6 1674 aa39■■■■□ 3.83
LIME1-207ENST00000489212 THOC2Q8NI27 1593 aaKnown RBP38.94■■■■□ 3.82
LIME1-207ENST00000489212 CFTRP13569 1480 aa38.84■■■■□ 3.81
LIME1-207ENST00000489212 CCDC88BA6NC98 1476 aa38.79■■■■□ 3.8
LIME1-207ENST00000489212 FANCD2Q9BXW9 1451 aa38.68■■■■□ 3.78
LIME1-207ENST00000489212 MRC2Q9UBG0 1479 aa38.66■■■■□ 3.78
LIME1-207ENST00000489212 CEP164Q9UPV0 1460 aa38.64■■■■□ 3.78
LIME1-207ENST00000489212 WDR62O43379 1518 aa38.56■■■■□ 3.76
LIME1-207ENST00000489212 PRDM2Q13029 1718 aa38.49■■■■□ 3.75
LIME1-207ENST00000489212 URB2Q14146 1524 aaKnown RBP38.35■■■■□ 3.73
LIME1-207ENST00000489212 SUPT5HO00267 1087 aaKnown RBP38.32■■■■□ 3.72
LIME1-207ENST00000489212 DNAJC5Q9H3Z4 198 aa38.26■■■■□ 3.72
LIME1-207ENST00000489212 TOPBP1Q92547 1522 aa38.04■■■■□ 3.68
LIME1-207ENST00000489212 DNMBPQ6XZF7 1577 aa37.96■■■■□ 3.67
LIME1-207ENST00000489212 ABCC8Q09428 1581 aa37.95■■■■□ 3.67
LIME1-207ENST00000489212 IFT140Q96RY7 1462 aa37.85■■■■□ 3.65
LIME1-207ENST00000489212 ZNF608Q9ULD9 1512 aaPredicted RBP37.77■■■■□ 3.64
LIME1-207ENST00000489212 POLA1P09884 1462 aaPredicted RBP37.71■■■■□ 3.63
LIME1-207ENST00000489212 CUX1P39880 1505 aa37.66■■■■□ 3.62
LIME1-207ENST00000489212 TARBP1Q13395 1621 aaKnown RBP37.66■■■■□ 3.62
LIME1-207ENST00000489212 RAD54L2Q9Y4B4 1467 aa37.58■■■■□ 3.61
LIME1-207ENST00000489212 EIF4G3O43432 1585 aaKnown RBP37.57■■■■□ 3.6
LIME1-207ENST00000489212 FGD5Q6ZNL6 1462 aa37.57■■■■□ 3.6
LIME1-207ENST00000489212 SOGA1O94964 1423 aa37.53■■■■□ 3.6
LIME1-207ENST00000489212 AQRO60306 1485 aaKnown RBP eCLIP37.51■■■■□ 3.596e-6■■■■□ 25.1
LIME1-207ENST00000489212 OSCARQ8IYS5 282 aa37.4■■■■□ 3.58
LIME1-207ENST00000489212 TDRD9Q8NDG6 1382 aaKnown RBP37.38■■■■□ 3.57
LIME1-207ENST00000489212 WDR97A6NE52 1622 aa37.28■■■■□ 3.56
LIME1-207ENST00000489212 WRNQ14191 1432 aaPredicted RBP eCLIP37.27■■■■□ 3.56
LIME1-207ENST00000489212 SYNJ1O43426 1573 aa37.25■■■■□ 3.55
LIME1-207ENST00000489212 TOP2BQ02880 1626 aa37.23■■■■□ 3.55
LIME1-207ENST00000489212 BIVM-ERCC5R4GMW8 1640 aa37.23■■■■□ 3.55
LIME1-207ENST00000489212 ABCA10Q8WWZ4 1543 aa37.18■■■■□ 3.54
LIME1-207ENST00000489212 CHD1O14646 1710 aa37.16■■■■□ 3.54
LIME1-207ENST00000489212 SNAPC4Q5SXM2 1469 aa37.13■■■■□ 3.54
LIME1-207ENST00000489212 GRIN2BQ13224 1484 aa37.11■■■■□ 3.53
LIME1-207ENST00000489212 GAPVD1Q14C86 1478 aa37.09■■■■□ 3.53
LIME1-207ENST00000489212 FBLN2P98095 1184 aa37.07■■■■□ 3.52
LIME1-207ENST00000489212 ABCA5Q8WWZ7 1642 aa37.07■■■■□ 3.52
LIME1-207ENST00000489212 MAGI1Q96QZ7 1491 aaPredicted RBP37.04■■■■□ 3.52
LIME1-207ENST00000489212 PBRM1Q86U86 1689 aa37.03■■■■□ 3.52
LIME1-207ENST00000489212 SYNJ2O15056 1496 aa36.91■■■■□ 3.5
LIME1-207ENST00000489212 CHMP7Q8WUX9 453 aaPredicted RBP36.91■■■■□ 3.5
LIME1-207ENST00000489212 TRIM41Q8WV44 630 aa36.88■■■■□ 3.49
LIME1-207ENST00000489212 RIMBP3CA6NJZ7 1639 aa36.88■■■■□ 3.49
LIME1-207ENST00000489212 RIMBP3BA6NNM3 1639 aa36.88■■■■□ 3.49
LIME1-207ENST00000489212 RIMBP3Q9UFD9 1639 aa36.88■■■■□ 3.49
LIME1-207ENST00000489212 ARHGEF11O15085 1522 aa36.83■■■■□ 3.49
LIME1-207ENST00000489212 CLASP1Q7Z460 1538 aa36.75■■■■□ 3.47
LIME1-207ENST00000489212 ADAMTS12P58397 1594 aa36.74■■■■□ 3.47
LIME1-207ENST00000489212 ERICH3Q5RHP9 1530 aa36.71■■■■□ 3.47
LIME1-207ENST00000489212 GRIN2AQ12879 1464 aa36.65■■■■□ 3.46
LIME1-207ENST00000489212 FHAD1B1AJZ9 1412 aa36.64■■■■□ 3.46
LIME1-207ENST00000489212 ARAP1Q96P48 1450 aa36.53■■■■□ 3.44
LIME1-207ENST00000489212 NUP160Q12769 1436 aa36.51■■■■□ 3.44
LIME1-207ENST00000489212 CEP170Q5SW79 1584 aa36.51■■■■□ 3.44
LIME1-207ENST00000489212 CYB5RLQ6IPT4 315 aa36.5■■■■□ 3.43
LIME1-207ENST00000489212 KIF27Q86VH2 1401 aa36.5■■■■□ 3.43
LIME1-207ENST00000489212 IGF1RP08069 1367 aa36.44■■■■□ 3.42
LIME1-207ENST00000489212 CUL7Q14999 1698 aa36.3■■■■□ 3.4
LIME1-207ENST00000489212 ERCC6L2Q5T890 1561 aa36.27■■■■□ 3.4
LIME1-207ENST00000489212 SHROOM2Q13796 1616 aa36.26■■■■□ 3.4
LIME1-207ENST00000489212 CARMIL1Q5VZK9 1371 aa36.2■■■■□ 3.39
LIME1-207ENST00000489212 RUSC2Q8N2Y8 1516 aa36.19■■■■□ 3.38
Retrieved 100 of 20,778 RNA–protein pairs in 9.9 ms