RNA–Protein interactions for RNA: ENST00000489142.5

VTI1A-206, Transcript of vesicle transport through interaction with t-SNAREs 1A, humanhuman

TSL 2

Gene VTI1A, Length 727 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VTI1A-206ENST00000489142 NISCHQ9Y2I1 1504 aa34.65■■■■□ 3.14
VTI1A-206ENST00000489142 CCDC180Q9P1Z9 1646 aa30.97■■■□□ 2.55
VTI1A-206ENST00000489142 ABCC9O60706 1549 aa30.69■■■□□ 2.5
VTI1A-206ENST00000489142 RB1CC1Q8TDY2 1594 aa29.3■■■□□ 2.28
VTI1A-206ENST00000489142 DCAF8L2P0C7V8 631 aa29.16■■■□□ 2.26
VTI1A-206ENST00000489142 NACADO15069 1562 aa29.15■■■□□ 2.26
VTI1A-206ENST00000489142 ZCCHC6Q5VYS8 1495 aaKnown RBP28.8■■■□□ 2.2
VTI1A-206ENST00000489142 MYO15BQ96JP2 1530 aa28.79■■■□□ 2.2
VTI1A-206ENST00000489142 UNC13AQ9UPW8 1703 aa28.77■■■□□ 2.2
VTI1A-206ENST00000489142 PABPN1Q86U42 306 aaKnown RBP eCLIP28.62■■■□□ 2.17
VTI1A-206ENST00000489142 DCAF1Q9Y4B6 1507 aa28.58■■■□□ 2.17
VTI1A-206ENST00000489142 BICRAQ9NZM4 1560 aa28.47■■■□□ 2.15
VTI1A-206ENST00000489142 DNAJC5BQ9UF47 199 aa28.46■■■□□ 2.15
VTI1A-206ENST00000489142 SCRIBQ14160 1630 aa28.33■■■□□ 2.13
VTI1A-206ENST00000489142 SHROOM4Q9ULL8 1493 aa27.98■■■□□ 2.07
VTI1A-206ENST00000489142 CC2D2AQ9P2K1 1620 aa27.74■■■□□ 2.03
VTI1A-206ENST00000489142 EIF4G1Q04637 1599 aaKnown RBP27.73■■■□□ 2.03
VTI1A-206ENST00000489142 CECR2Q9BXF3 1484 aa27.56■■■□□ 2
VTI1A-206ENST00000489142 SMARCA4P51532 1647 aa27.01■■□□□ 1.91
VTI1A-206ENST00000489142 ATAD2BQ9ULI0 1458 aa26.9■■□□□ 1.9
VTI1A-206ENST00000489142 NCAPD3P42695 1498 aa26.88■■□□□ 1.89
VTI1A-206ENST00000489142 BAZ1AQ9NRL2 1556 aaPredicted RBP26.87■■□□□ 1.89
VTI1A-206ENST00000489142 SMARCA2P51531 1590 aa26.83■■□□□ 1.89
VTI1A-206ENST00000489142 MROH2BQ7Z745 1585 aa26.75■■□□□ 1.87
VTI1A-206ENST00000489142 HMGXB3Q12766 1538 aa26.75■■□□□ 1.87
VTI1A-206ENST00000489142 BAZ1BQ9UIG0 1483 aaKnown RBP26.68■■□□□ 1.86
VTI1A-206ENST00000489142 PEG3Q9GZU2 1588 aa26.67■■□□□ 1.86
VTI1A-206ENST00000489142 WIZO95785 1651 aa26.5■■□□□ 1.83
VTI1A-206ENST00000489142 NESP48681 1621 aa26.47■■□□□ 1.83
VTI1A-206ENST00000489142 ERCC6Q03468 1493 aa26.44■■□□□ 1.82
VTI1A-206ENST00000489142 RSF1Q96T23 1441 aaPredicted RBP26.28■■□□□ 1.8
VTI1A-206ENST00000489142 LAMC3Q9Y6N6 1575 aa26.26■■□□□ 1.79
VTI1A-206ENST00000489142 CUX2O14529 1486 aa26.21■■□□□ 1.79
VTI1A-206ENST00000489142 KIF21AQ7Z4S6 1674 aa26.19■■□□□ 1.78
VTI1A-206ENST00000489142 THOC2Q8NI27 1593 aaKnown RBP26.12■■□□□ 1.77
VTI1A-206ENST00000489142 TOP2AP11388 1531 aaKnown RBP26.12■■□□□ 1.77
VTI1A-206ENST00000489142 CADPSQ9ULU8 1353 aa26.09■■□□□ 1.77
VTI1A-206ENST00000489142 PDS5BQ9NTI5 1447 aa26.06■■□□□ 1.76
VTI1A-206ENST00000489142 CFTRP13569 1480 aa25.88■■□□□ 1.73
VTI1A-206ENST00000489142 MRC2Q9UBG0 1479 aa25.87■■□□□ 1.73
VTI1A-206ENST00000489142 FANCD2Q9BXW9 1451 aa25.85■■□□□ 1.73
VTI1A-206ENST00000489142 CEP164Q9UPV0 1460 aa25.85■■□□□ 1.73
VTI1A-206ENST00000489142 CCDC88BA6NC98 1476 aa25.83■■□□□ 1.73
VTI1A-206ENST00000489142 WDR62O43379 1518 aa25.8■■□□□ 1.72
VTI1A-206ENST00000489142 DNAJC5Q9H3Z4 198 aa25.79■■□□□ 1.72
VTI1A-206ENST00000489142 PRDM2Q13029 1718 aa25.77■■□□□ 1.72
VTI1A-206ENST00000489142 URB2Q14146 1524 aaKnown RBP25.64■■□□□ 1.7
VTI1A-206ENST00000489142 SUPT5HO00267 1087 aaKnown RBP25.45■■□□□ 1.66
VTI1A-206ENST00000489142 TOPBP1Q92547 1522 aa25.41■■□□□ 1.66
VTI1A-206ENST00000489142 DNMBPQ6XZF7 1577 aa25.35■■□□□ 1.65
VTI1A-206ENST00000489142 ZNF608Q9ULD9 1512 aaPredicted RBP25.28■■□□□ 1.64
VTI1A-206ENST00000489142 ABCC8Q09428 1581 aa25.28■■□□□ 1.64
VTI1A-206ENST00000489142 IFT140Q96RY7 1462 aa25.28■■□□□ 1.64
VTI1A-206ENST00000489142 EIF4G3O43432 1585 aaKnown RBP25.18■■□□□ 1.62
VTI1A-206ENST00000489142 TARBP1Q13395 1621 aaKnown RBP25.17■■□□□ 1.62
VTI1A-206ENST00000489142 POLA1P09884 1462 aaPredicted RBP25.16■■□□□ 1.62
VTI1A-206ENST00000489142 CUX1P39880 1505 aa25.12■■□□□ 1.61
VTI1A-206ENST00000489142 RAD54L2Q9Y4B4 1467 aa25.1■■□□□ 1.61
VTI1A-206ENST00000489142 AQRO60306 1485 aaKnown RBP eCLIP25.09■■□□□ 1.61
VTI1A-206ENST00000489142 FGD5Q6ZNL6 1462 aa25.08■■□□□ 1.6
VTI1A-206ENST00000489142 OSCARQ8IYS5 282 aa25.05■■□□□ 1.6
VTI1A-206ENST00000489142 SOGA1O94964 1423 aa25.03■■□□□ 1.6
VTI1A-206ENST00000489142 TDRD9Q8NDG6 1382 aaKnown RBP24.97■■□□□ 1.59
VTI1A-206ENST00000489142 CHD1O14646 1710 aa24.97■■□□□ 1.59
VTI1A-206ENST00000489142 TRIM41Q8WV44 630 aa24.92■■□□□ 1.58
VTI1A-206ENST00000489142 WDR97A6NE52 1622 aa24.92■■□□□ 1.58
VTI1A-206ENST00000489142 FBLN2P98095 1184 aa24.85■■□□□ 1.57
VTI1A-206ENST00000489142 SNAPC4Q5SXM2 1469 aa24.84■■□□□ 1.57
VTI1A-206ENST00000489142 SYNJ1O43426 1573 aa24.83■■□□□ 1.57
VTI1A-206ENST00000489142 RIMBP3CA6NJZ7 1639 aa24.81■■□□□ 1.56
VTI1A-206ENST00000489142 RIMBP3BA6NNM3 1639 aa24.81■■□□□ 1.56
VTI1A-206ENST00000489142 RIMBP3Q9UFD9 1639 aa24.81■■□□□ 1.56
VTI1A-206ENST00000489142 BIVM-ERCC5R4GMW8 1640 aa24.81■■□□□ 1.56
VTI1A-206ENST00000489142 PBRM1Q86U86 1689 aa24.81■■□□□ 1.56
VTI1A-206ENST00000489142 TOP2BQ02880 1626 aa24.79■■□□□ 1.56
VTI1A-206ENST00000489142 WRNQ14191 1432 aaPredicted RBP eCLIP24.78■■□□□ 1.56
VTI1A-206ENST00000489142 GRIN2BQ13224 1484 aa24.77■■□□□ 1.56
VTI1A-206ENST00000489142 ABCA10Q8WWZ4 1543 aa24.76■■□□□ 1.55
VTI1A-206ENST00000489142 ABCA5Q8WWZ7 1642 aa24.75■■□□□ 1.55
VTI1A-206ENST00000489142 GAPVD1Q14C86 1478 aa24.75■■□□□ 1.55
VTI1A-206ENST00000489142 ARHGEF11O15085 1522 aa24.73■■□□□ 1.55
VTI1A-206ENST00000489142 MAGI1Q96QZ7 1491 aaPredicted RBP24.73■■□□□ 1.55
VTI1A-206ENST00000489142 CHMP7Q8WUX9 453 aaPredicted RBP24.67■■□□□ 1.54
VTI1A-206ENST00000489142 SYNJ2O15056 1496 aa24.65■■□□□ 1.54
VTI1A-206ENST00000489142 CLASP1Q7Z460 1538 aa24.61■■□□□ 1.53
VTI1A-206ENST00000489142 ADAMTS12P58397 1594 aa24.55■■□□□ 1.52
VTI1A-206ENST00000489142 ARAP1Q96P48 1450 aa24.52■■□□□ 1.52
VTI1A-206ENST00000489142 CYB5RLQ6IPT4 315 aa24.51■■□□□ 1.51
VTI1A-206ENST00000489142 GRIN2AQ12879 1464 aa24.48■■□□□ 1.51
VTI1A-206ENST00000489142 ERICH3Q5RHP9 1530 aa24.45■■□□□ 1.51
VTI1A-206ENST00000489142 CEP170Q5SW79 1584 aa24.42■■□□□ 1.5
VTI1A-206ENST00000489142 FHAD1B1AJZ9 1412 aa24.42■■□□□ 1.5
VTI1A-206ENST00000489142 NUP160Q12769 1436 aa24.35■■□□□ 1.49
VTI1A-206ENST00000489142 ERCC6L2Q5T890 1561 aa24.32■■□□□ 1.48
VTI1A-206ENST00000489142 KIF27Q86VH2 1401 aa24.27■■□□□ 1.48
VTI1A-206ENST00000489142 SHROOM2Q13796 1616 aa24.24■■□□□ 1.47
VTI1A-206ENST00000489142 IGF1RP08069 1367 aa24.22■■□□□ 1.47
VTI1A-206ENST00000489142 CUL7Q14999 1698 aa24.21■■□□□ 1.47
VTI1A-206ENST00000489142 RUSC2Q8N2Y8 1516 aa24.2■■□□□ 1.47
VTI1A-206ENST00000489142 TRHP20396 242 aaPredicted RBP24.14■■□□□ 1.45
Retrieved 100 of 20,778 RNA–protein pairs in 12.5 ms