RNA–Protein interactions for RNA: ENST00000489130.2

SRRM1-216, Transcript of serine and arginine repetitive matrix 1, humanhuman

TSL 2

Gene SRRM1, Length 513 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SRRM1-216ENST00000489130 NISCHQ9Y2I1 1504 aa31.17■■■□□ 2.58
SRRM1-216ENST00000489130 CCDC180Q9P1Z9 1646 aa27.86■■■□□ 2.05
SRRM1-216ENST00000489130 ABCC9O60706 1549 aa27.57■■■□□ 2
SRRM1-216ENST00000489130 RB1CC1Q8TDY2 1594 aa26.38■■□□□ 1.81
SRRM1-216ENST00000489130 NACADO15069 1562 aa26.29■■□□□ 1.8
SRRM1-216ENST00000489130 DCAF8L2P0C7V8 631 aa26.09■■□□□ 1.77
SRRM1-216ENST00000489130 MYO15BQ96JP2 1530 aa26.05■■□□□ 1.76
SRRM1-216ENST00000489130 ZCCHC6Q5VYS8 1495 aaKnown RBP25.91■■□□□ 1.74
SRRM1-216ENST00000489130 DCAF1Q9Y4B6 1507 aa25.81■■□□□ 1.72
SRRM1-216ENST00000489130 UNC13AQ9UPW8 1703 aa25.74■■□□□ 1.71
SRRM1-216ENST00000489130 PABPN1Q86U42 306 aaKnown RBP eCLIP25.68■■□□□ 1.7
SRRM1-216ENST00000489130 DNAJC5BQ9UF47 199 aa25.61■■□□□ 1.69
SRRM1-216ENST00000489130 BICRAQ9NZM4 1560 aa25.61■■□□□ 1.69
SRRM1-216ENST00000489130 SCRIBQ14160 1630 aa25.37■■□□□ 1.65
SRRM1-216ENST00000489130 SHROOM4Q9ULL8 1493 aa25.34■■□□□ 1.65
SRRM1-216ENST00000489130 EIF4G1Q04637 1599 aaKnown RBP24.96■■□□□ 1.59
SRRM1-216ENST00000489130 CC2D2AQ9P2K1 1620 aa24.93■■□□□ 1.58
SRRM1-216ENST00000489130 CECR2Q9BXF3 1484 aa24.82■■□□□ 1.56
SRRM1-216ENST00000489130 NCAPD3P42695 1498 aa24.26■■□□□ 1.47
SRRM1-216ENST00000489130 SMARCA4P51532 1647 aa24.25■■□□□ 1.47
SRRM1-216ENST00000489130 ATAD2BQ9ULI0 1458 aa24.22■■□□□ 1.47
SRRM1-216ENST00000489130 BAZ1AQ9NRL2 1556 aaPredicted RBP24.19■■□□□ 1.46
SRRM1-216ENST00000489130 SMARCA2P51531 1590 aa24.16■■□□□ 1.46
SRRM1-216ENST00000489130 HMGXB3Q12766 1538 aa24.12■■□□□ 1.45
SRRM1-216ENST00000489130 PEG3Q9GZU2 1588 aa24.06■■□□□ 1.44
SRRM1-216ENST00000489130 MROH2BQ7Z745 1585 aa24■■□□□ 1.43
SRRM1-216ENST00000489130 BAZ1BQ9UIG0 1483 aaKnown RBP23.99■■□□□ 1.43
SRRM1-216ENST00000489130 ERCC6Q03468 1493 aa23.78■■□□□ 1.4
SRRM1-216ENST00000489130 NESP48681 1621 aa23.76■■□□□ 1.39
SRRM1-216ENST00000489130 WIZO95785 1651 aa23.71■■□□□ 1.39
SRRM1-216ENST00000489130 CUX2O14529 1486 aa23.69■■□□□ 1.38
SRRM1-216ENST00000489130 LAMC3Q9Y6N6 1575 aa23.67■■□□□ 1.38
SRRM1-216ENST00000489130 RSF1Q96T23 1441 aaPredicted RBP23.62■■□□□ 1.37
SRRM1-216ENST00000489130 CADPSQ9ULU8 1353 aa23.52■■□□□ 1.36
SRRM1-216ENST00000489130 PDS5BQ9NTI5 1447 aa23.51■■□□□ 1.35
SRRM1-216ENST00000489130 THOC2Q8NI27 1593 aaKnown RBP23.49■■□□□ 1.35
SRRM1-216ENST00000489130 TOP2AP11388 1531 aaKnown RBP23.47■■□□□ 1.35
SRRM1-216ENST00000489130 KIF21AQ7Z4S6 1674 aa23.45■■□□□ 1.34
SRRM1-216ENST00000489130 AEBP2Q6ZN18 517 aaPredicted RBP23.43■■□□□ 1.34
SRRM1-216ENST00000489130 DNAJC5Q9H3Z4 198 aa23.34■■□□□ 1.33
SRRM1-216ENST00000489130 CFTRP13569 1480 aa23.33■■□□□ 1.33
SRRM1-216ENST00000489130 MRC2Q9UBG0 1479 aa23.3■■□□□ 1.32
SRRM1-216ENST00000489130 FANCD2Q9BXW9 1451 aa23.25■■□□□ 1.31
SRRM1-216ENST00000489130 CEP164Q9UPV0 1460 aa23.25■■□□□ 1.31
SRRM1-216ENST00000489130 WDR62O43379 1518 aa23.25■■□□□ 1.31
SRRM1-216ENST00000489130 CCDC88BA6NC98 1476 aa23.18■■□□□ 1.3
SRRM1-216ENST00000489130 PRDM2Q13029 1718 aa23.08■■□□□ 1.29
SRRM1-216ENST00000489130 URB2Q14146 1524 aaKnown RBP23.04■■□□□ 1.28
SRRM1-216ENST00000489130 TOPBP1Q92547 1522 aa22.84■■□□□ 1.25
SRRM1-216ENST00000489130 ABCC8Q09428 1581 aa22.82■■□□□ 1.24
SRRM1-216ENST00000489130 DNMBPQ6XZF7 1577 aa22.79■■□□□ 1.24
SRRM1-216ENST00000489130 IFT140Q96RY7 1462 aa22.79■■□□□ 1.24
SRRM1-216ENST00000489130 ZNF608Q9ULD9 1512 aaPredicted RBP22.71■■□□□ 1.23
SRRM1-216ENST00000489130 SUPT5HO00267 1087 aaKnown RBP22.69■■□□□ 1.22
SRRM1-216ENST00000489130 POLA1P09884 1462 aaPredicted RBP22.63■■□□□ 1.21
SRRM1-216ENST00000489130 TARBP1Q13395 1621 aaKnown RBP22.63■■□□□ 1.21
SRRM1-216ENST00000489130 EIF4G3O43432 1585 aaKnown RBP22.61■■□□□ 1.21
SRRM1-216ENST00000489130 OSCARQ8IYS5 282 aa22.61■■□□□ 1.21
SRRM1-216ENST00000489130 CUX1P39880 1505 aa22.55■■□□□ 1.2
SRRM1-216ENST00000489130 AQRO60306 1485 aaKnown RBP eCLIP22.52■■□□□ 1.26e-17■■■■□ 24.8
SRRM1-216ENST00000489130 FGD5Q6ZNL6 1462 aa22.52■■□□□ 1.2
SRRM1-216ENST00000489130 RAD54L2Q9Y4B4 1467 aa22.52■■□□□ 1.2
SRRM1-216ENST00000489130 SOGA1O94964 1423 aa22.51■■□□□ 1.19
SRRM1-216ENST00000489130 WDR97A6NE52 1622 aa22.45■■□□□ 1.18
SRRM1-216ENST00000489130 TDRD9Q8NDG6 1382 aaKnown RBP22.42■■□□□ 1.18
SRRM1-216ENST00000489130 TRIM41Q8WV44 630 aa22.37■■□□□ 1.17
SRRM1-216ENST00000489130 CHD1O14646 1710 aa22.35■■□□□ 1.17
SRRM1-216ENST00000489130 SNAPC4Q5SXM2 1469 aa22.32■■□□□ 1.16
SRRM1-216ENST00000489130 GRIN2BQ13224 1484 aa22.31■■□□□ 1.16
SRRM1-216ENST00000489130 ABCA10Q8WWZ4 1543 aa22.3■■□□□ 1.16
SRRM1-216ENST00000489130 MAGI1Q96QZ7 1491 aaPredicted RBP22.29■■□□□ 1.16
SRRM1-216ENST00000489130 RIMBP3CA6NJZ7 1639 aa22.29■■□□□ 1.16
SRRM1-216ENST00000489130 RIMBP3BA6NNM3 1639 aa22.29■■□□□ 1.16
SRRM1-216ENST00000489130 RIMBP3Q9UFD9 1639 aa22.29■■□□□ 1.16
SRRM1-216ENST00000489130 ARHGEF11O15085 1522 aa22.27■■□□□ 1.16
SRRM1-216ENST00000489130 FBLN2P98095 1184 aa22.27■■□□□ 1.16
SRRM1-216ENST00000489130 WRNQ14191 1432 aaPredicted RBP eCLIP22.27■■□□□ 1.16
SRRM1-216ENST00000489130 TOP2BQ02880 1626 aa22.27■■□□□ 1.16
SRRM1-216ENST00000489130 BIVM-ERCC5R4GMW8 1640 aa22.26■■□□□ 1.15
SRRM1-216ENST00000489130 GAPVD1Q14C86 1478 aa22.26■■□□□ 1.15
SRRM1-216ENST00000489130 SYNJ1O43426 1573 aa22.24■■□□□ 1.15
SRRM1-216ENST00000489130 ABCA5Q8WWZ7 1642 aa22.24■■□□□ 1.15
SRRM1-216ENST00000489130 PBRM1Q86U86 1689 aa22.21■■□□□ 1.15
SRRM1-216ENST00000489130 SYNJ2O15056 1496 aa22.21■■□□□ 1.15
SRRM1-216ENST00000489130 CHMP7Q8WUX9 453 aaPredicted RBP22.19■■□□□ 1.14
SRRM1-216ENST00000489130 CLASP1Q7Z460 1538 aa22.16■■□□□ 1.14
SRRM1-216ENST00000489130 ARAP1Q96P48 1450 aa22.08■■□□□ 1.12
SRRM1-216ENST00000489130 ADAMTS12P58397 1594 aa22.04■■□□□ 1.12
SRRM1-216ENST00000489130 CYB5RLQ6IPT4 315 aa22.04■■□□□ 1.12
SRRM1-216ENST00000489130 ERICH3Q5RHP9 1530 aa22.03■■□□□ 1.12
SRRM1-216ENST00000489130 GRIN2AQ12879 1464 aa22.03■■□□□ 1.12
SRRM1-216ENST00000489130 FHAD1B1AJZ9 1412 aa21.99■■□□□ 1.11
SRRM1-216ENST00000489130 NUP160Q12769 1436 aa21.96■■□□□ 1.11
SRRM1-216ENST00000489130 CEP170Q5SW79 1584 aa21.92■■□□□ 1.1
SRRM1-216ENST00000489130 KIF27Q86VH2 1401 aa21.83■■□□□ 1.09
SRRM1-216ENST00000489130 SHROOM2Q13796 1616 aa21.82■■□□□ 1.08
SRRM1-216ENST00000489130 ERCC6L2Q5T890 1561 aa21.79■■□□□ 1.08
SRRM1-216ENST00000489130 IGF1RP08069 1367 aa21.79■■□□□ 1.08
SRRM1-216ENST00000489130 CUL7Q14999 1698 aa21.75■■□□□ 1.07
SRRM1-216ENST00000489130 RUSC2Q8N2Y8 1516 aa21.74■■□□□ 1.07
Retrieved 100 of 20,778 RNA–protein pairs in 211.6 ms