RNA–Protein interactions for RNA: ENST00000489030.1

USP11-210, Transcript of ubiquitin specific peptidase 11, humanhuman

TSL 2

Gene USP11, Length 340 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP11-210ENST00000489030 NISCHQ9Y2I1 1504 aa29.08■■■□□ 2.25
USP11-210ENST00000489030 ABCC9O60706 1549 aa26.52■■□□□ 1.84
USP11-210ENST00000489030 CCDC180Q9P1Z9 1646 aa26.08■■□□□ 1.77
USP11-210ENST00000489030 DNAJC5BQ9UF47 199 aa25.23■■□□□ 1.63
USP11-210ENST00000489030 RB1CC1Q8TDY2 1594 aa24.98■■□□□ 1.59
USP11-210ENST00000489030 NACADO15069 1562 aa24.76■■□□□ 1.55
USP11-210ENST00000489030 PABPN1Q86U42 306 aaKnown RBP eCLIP24.72■■□□□ 1.55
USP11-210ENST00000489030 DCAF8L2P0C7V8 631 aa24.71■■□□□ 1.55
USP11-210ENST00000489030 UNC13AQ9UPW8 1703 aa24.47■■□□□ 1.51
USP11-210ENST00000489030 BICRAQ9NZM4 1560 aa24.4■■□□□ 1.5
USP11-210ENST00000489030 MYO15BQ96JP2 1530 aa24.3■■□□□ 1.48
USP11-210ENST00000489030 ZCCHC6Q5VYS8 1495 aaKnown RBP24.05■■□□□ 1.44
USP11-210ENST00000489030 DCAF1Q9Y4B6 1507 aa23.92■■□□□ 1.42
USP11-210ENST00000489030 SCRIBQ14160 1630 aa23.89■■□□□ 1.42
USP11-210ENST00000489030 CC2D2AQ9P2K1 1620 aa23.88■■□□□ 1.41
USP11-210ENST00000489030 CECR2Q9BXF3 1484 aa23.87■■□□□ 1.41
USP11-210ENST00000489030 SHROOM4Q9ULL8 1493 aa23.84■■□□□ 1.41
USP11-210ENST00000489030 EIF4G1Q04637 1599 aaKnown RBP23.76■■□□□ 1.39
USP11-210ENST00000489030 DNAJC5Q9H3Z4 198 aa23.2■■□□□ 1.3
USP11-210ENST00000489030 NCAPD3P42695 1498 aa22.92■■□□□ 1.26
USP11-210ENST00000489030 ATAD2BQ9ULI0 1458 aa22.85■■□□□ 1.25
USP11-210ENST00000489030 CUX2O14529 1486 aa22.84■■□□□ 1.25
USP11-210ENST00000489030 ERCC6Q03468 1493 aa22.82■■□□□ 1.24
USP11-210ENST00000489030 NESP48681 1621 aa22.75■■□□□ 1.23
USP11-210ENST00000489030 SMARCA4P51532 1647 aa22.72■■□□□ 1.23
USP11-210ENST00000489030 HMGXB3Q12766 1538 aa22.67■■□□□ 1.22
USP11-210ENST00000489030 SMARCA2P51531 1590 aa22.67■■□□□ 1.22
USP11-210ENST00000489030 BAZ1BQ9UIG0 1483 aaKnown RBP22.56■■□□□ 1.2
USP11-210ENST00000489030 BAZ1AQ9NRL2 1556 aaPredicted RBP22.53■■□□□ 1.2
USP11-210ENST00000489030 THOC2Q8NI27 1593 aaKnown RBP22.48■■□□□ 1.19
USP11-210ENST00000489030 MROH2BQ7Z745 1585 aa22.47■■□□□ 1.19
USP11-210ENST00000489030 PEG3Q9GZU2 1588 aa22.46■■□□□ 1.19
USP11-210ENST00000489030 LAMC3Q9Y6N6 1575 aa22.37■■□□□ 1.17
USP11-210ENST00000489030 KIF21AQ7Z4S6 1674 aa22.34■■□□□ 1.17
USP11-210ENST00000489030 PDS5BQ9NTI5 1447 aa22.26■■□□□ 1.15
USP11-210ENST00000489030 CADPSQ9ULU8 1353 aa22.22■■□□□ 1.15
USP11-210ENST00000489030 WIZO95785 1651 aa22.16■■□□□ 1.14
USP11-210ENST00000489030 MRC2Q9UBG0 1479 aa22.14■■□□□ 1.13
USP11-210ENST00000489030 TRIM41Q8WV44 630 aa22.12■■□□□ 1.13
USP11-210ENST00000489030 WDR62O43379 1518 aa22.09■■□□□ 1.13
USP11-210ENST00000489030 FANCD2Q9BXW9 1451 aa21.98■■□□□ 1.11
USP11-210ENST00000489030 CEP164Q9UPV0 1460 aa21.98■■□□□ 1.11
USP11-210ENST00000489030 CFTRP13569 1480 aa21.91■■□□□ 1.1
USP11-210ENST00000489030 RSF1Q96T23 1441 aaPredicted RBP21.9■■□□□ 1.1
USP11-210ENST00000489030 URB2Q14146 1524 aaKnown RBP21.86■■□□□ 1.09
USP11-210ENST00000489030 TOP2AP11388 1531 aaKnown RBP21.81■■□□□ 1.08
USP11-210ENST00000489030 OSCARQ8IYS5 282 aa21.79■■□□□ 1.08
USP11-210ENST00000489030 ZNF608Q9ULD9 1512 aaPredicted RBP21.66■■□□□ 1.06
USP11-210ENST00000489030 CCDC88BA6NC98 1476 aa21.63■■□□□ 1.05
USP11-210ENST00000489030 RIMBP3CA6NJZ7 1639 aa21.56■■□□□ 1.04
USP11-210ENST00000489030 RIMBP3BA6NNM3 1639 aa21.56■■□□□ 1.04
USP11-210ENST00000489030 RIMBP3Q9UFD9 1639 aa21.56■■□□□ 1.04
USP11-210ENST00000489030 IFT140Q96RY7 1462 aa21.55■■□□□ 1.04
USP11-210ENST00000489030 TOPBP1Q92547 1522 aa21.55■■□□□ 1.04
USP11-210ENST00000489030 PRDM2Q13029 1718 aa21.54■■□□□ 1.04
USP11-210ENST00000489030 ARHGEF11O15085 1522 aa21.48■■□□□ 1.03
USP11-210ENST00000489030 EIF4G3O43432 1585 aaKnown RBP21.43■■□□□ 1.02
USP11-210ENST00000489030 AQRO60306 1485 aaKnown RBP eCLIP21.42■■□□□ 1.02
USP11-210ENST00000489030 DNMBPQ6XZF7 1577 aa21.39■■□□□ 1.01
USP11-210ENST00000489030 CYB5RLQ6IPT4 315 aa21.36■■□□□ 1.01
USP11-210ENST00000489030 TARBP1Q13395 1621 aaKnown RBP21.36■■□□□ 1.01
USP11-210ENST00000489030 ABCC8Q09428 1581 aa21.34■■□□□ 1.01
USP11-210ENST00000489030 CHD1O14646 1710 aa21.32■■□□□ 1
USP11-210ENST00000489030 POLA1P09884 1462 aaPredicted RBP21.31■■□□□ 1
USP11-210ENST00000489030 RAD54L2Q9Y4B4 1467 aa21.3■■□□□ 1
USP11-210ENST00000489030 ARAP1Q96P48 1450 aa21.29■■□□□ 1
USP11-210ENST00000489030 FBLN2P98095 1184 aa21.28■■□□□ 1
USP11-210ENST00000489030 TDRD9Q8NDG6 1382 aaKnown RBP21.25■□□□□ 0.99
USP11-210ENST00000489030 SOGA1O94964 1423 aa21.19■□□□□ 0.98
USP11-210ENST00000489030 TRHP20396 242 aaPredicted RBP21.16■□□□□ 0.98
USP11-210ENST00000489030 SNAPC4Q5SXM2 1469 aa21.15■□□□□ 0.98
USP11-210ENST00000489030 FGD5Q6ZNL6 1462 aa21.14■□□□□ 0.98
USP11-210ENST00000489030 CUX1P39880 1505 aa21.12■□□□□ 0.97
USP11-210ENST00000489030 CLASP1Q7Z460 1538 aa21.09■□□□□ 0.97
USP11-210ENST00000489030 CHMP7Q8WUX9 453 aaPredicted RBP21.04■□□□□ 0.96
USP11-210ENST00000489030 GRIN2BQ13224 1484 aa21.01■□□□□ 0.95
USP11-210ENST00000489030 MAGI1Q96QZ7 1491 aaPredicted RBP21.01■□□□□ 0.95
USP11-210ENST00000489030 SYNJ1O43426 1573 aa20.97■□□□□ 0.95
USP11-210ENST00000489030 WDR97A6NE52 1622 aa20.97■□□□□ 0.95
USP11-210ENST00000489030 SYNJ2O15056 1496 aa20.96■□□□□ 0.95
USP11-210ENST00000489030 GAPVD1Q14C86 1478 aa20.91■□□□□ 0.94
USP11-210ENST00000489030 PBRM1Q86U86 1689 aa20.88■□□□□ 0.93
USP11-210ENST00000489030 ABCA10Q8WWZ4 1543 aa20.85■□□□□ 0.93
USP11-210ENST00000489030 ABCA5Q8WWZ7 1642 aa20.85■□□□□ 0.93
USP11-210ENST00000489030 ERCC6L2Q5T890 1561 aa20.85■□□□□ 0.93
USP11-210ENST00000489030 SUPT5HO00267 1087 aaKnown RBP20.78■□□□□ 0.92
USP11-210ENST00000489030 GRIN2AQ12879 1464 aa20.75■□□□□ 0.91
USP11-210ENST00000489030 CEP170Q5SW79 1584 aa20.73■□□□□ 0.91
USP11-210ENST00000489030 ADAMTS12P58397 1594 aa20.72■□□□□ 0.91
USP11-210ENST00000489030 NUP160Q12769 1436 aa20.71■□□□□ 0.91
USP11-210ENST00000489030 WRNQ14191 1432 aaPredicted RBP eCLIP20.7■□□□□ 0.9
USP11-210ENST00000489030 AEBP2Q6ZN18 517 aaPredicted RBP20.67■□□□□ 0.9
USP11-210ENST00000489030 FHAD1B1AJZ9 1412 aa20.63■□□□□ 0.89
USP11-210ENST00000489030 TOP2BQ02880 1626 aa20.62■□□□□ 0.89
USP11-210ENST00000489030 SHROOM2Q13796 1616 aa20.61■□□□□ 0.89
USP11-210ENST00000489030 BIVM-ERCC5R4GMW8 1640 aa20.61■□□□□ 0.89
USP11-210ENST00000489030 PRG4Q92954 1404 aaPredicted RBP20.54■□□□□ 0.88
USP11-210ENST00000489030 ERICH3Q5RHP9 1530 aa20.54■□□□□ 0.88
USP11-210ENST00000489030 JPH4Q96JJ6 628 aa20.5■□□□□ 0.87
USP11-210ENST00000489030 KIF13AQ9H1H9 1805 aa20.48■□□□□ 0.87
Retrieved 100 of 20,778 RNA–protein pairs in 51.2 ms