RNA–Protein interactions for RNA: ENST00000488935.5

ERGIC3-217, Transcript of ERGIC and golgi 3, humanhuman

TSL 2

Gene ERGIC3, Length 389 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ERGIC3-217ENST00000488935 NISCHQ9Y2I1 1504 aa39.78■■■■□ 3.96
ERGIC3-217ENST00000488935 ABCC9O60706 1549 aa35.83■■■■□ 3.33
ERGIC3-217ENST00000488935 CCDC180Q9P1Z9 1646 aa35.57■■■■□ 3.29
ERGIC3-217ENST00000488935 RB1CC1Q8TDY2 1594 aa33.91■■■■□ 3.02
ERGIC3-217ENST00000488935 DCAF8L2P0C7V8 631 aa33.85■■■■□ 3.01
ERGIC3-217ENST00000488935 DNAJC5BQ9UF47 199 aa33.69■■■□□ 2.98
ERGIC3-217ENST00000488935 NACADO15069 1562 aa33.64■■■□□ 2.98
ERGIC3-217ENST00000488935 PABPN1Q86U42 306 aaKnown RBP eCLIP33.45■■■□□ 2.955e-10■■□□□ 14.5
ERGIC3-217ENST00000488935 UNC13AQ9UPW8 1703 aa33.29■■■□□ 2.92
ERGIC3-217ENST00000488935 MYO15BQ96JP2 1530 aa33.07■■■□□ 2.88
ERGIC3-217ENST00000488935 BICRAQ9NZM4 1560 aa33.03■■■□□ 2.88
ERGIC3-217ENST00000488935 ZCCHC6Q5VYS8 1495 aaKnown RBP32.94■■■□□ 2.86
ERGIC3-217ENST00000488935 DCAF1Q9Y4B6 1507 aa32.7■■■□□ 2.83
ERGIC3-217ENST00000488935 SCRIBQ14160 1630 aa32.65■■■□□ 2.82
ERGIC3-217ENST00000488935 CC2D2AQ9P2K1 1620 aa32.29■■■□□ 2.76
ERGIC3-217ENST00000488935 SHROOM4Q9ULL8 1493 aa32.28■■■□□ 2.76
ERGIC3-217ENST00000488935 CECR2Q9BXF3 1484 aa32.18■■■□□ 2.74
ERGIC3-217ENST00000488935 EIF4G1Q04637 1599 aaKnown RBP32.18■■■□□ 2.74
ERGIC3-217ENST00000488935 NCAPD3P42695 1498 aa31.09■■■□□ 2.57
ERGIC3-217ENST00000488935 ATAD2BQ9ULI0 1458 aa31.07■■■□□ 2.56
ERGIC3-217ENST00000488935 SMARCA4P51532 1647 aa31.04■■■□□ 2.56
ERGIC3-217ENST00000488935 SMARCA2P51531 1590 aa30.9■■■□□ 2.54
ERGIC3-217ENST00000488935 ERCC6Q03468 1493 aa30.85■■■□□ 2.53
ERGIC3-217ENST00000488935 BAZ1AQ9NRL2 1556 aaPredicted RBP30.83■■■□□ 2.53
ERGIC3-217ENST00000488935 HMGXB3Q12766 1538 aa30.83■■■□□ 2.53
ERGIC3-217ENST00000488935 NESP48681 1621 aa30.81■■■□□ 2.52
ERGIC3-217ENST00000488935 BAZ1BQ9UIG0 1483 aaKnown RBP30.76■■■□□ 2.52
ERGIC3-217ENST00000488935 DNAJC5Q9H3Z4 198 aa30.76■■■□□ 2.51
ERGIC3-217ENST00000488935 MROH2BQ7Z745 1585 aa30.75■■■□□ 2.51
ERGIC3-217ENST00000488935 CUX2O14529 1486 aa30.65■■■□□ 2.5
ERGIC3-217ENST00000488935 PEG3Q9GZU2 1588 aa30.62■■■□□ 2.49
ERGIC3-217ENST00000488935 WIZO95785 1651 aa30.42■■■□□ 2.46
ERGIC3-217ENST00000488935 LAMC3Q9Y6N6 1575 aa30.37■■■□□ 2.45
ERGIC3-217ENST00000488935 KIF21AQ7Z4S6 1674 aa30.36■■■□□ 2.45
ERGIC3-217ENST00000488935 THOC2Q8NI27 1593 aaKnown RBP30.35■■■□□ 2.45
ERGIC3-217ENST00000488935 PDS5BQ9NTI5 1447 aa30.22■■■□□ 2.43
ERGIC3-217ENST00000488935 CADPSQ9ULU8 1353 aa30.2■■■□□ 2.43
ERGIC3-217ENST00000488935 RSF1Q96T23 1441 aaPredicted RBP30.08■■■□□ 2.41
ERGIC3-217ENST00000488935 MRC2Q9UBG0 1479 aa29.99■■■□□ 2.39
ERGIC3-217ENST00000488935 WDR62O43379 1518 aa29.9■■■□□ 2.38
ERGIC3-217ENST00000488935 TOP2AP11388 1531 aaKnown RBP29.9■■■□□ 2.38
ERGIC3-217ENST00000488935 FANCD2Q9BXW9 1451 aa29.89■■■□□ 2.38
ERGIC3-217ENST00000488935 CEP164Q9UPV0 1460 aa29.88■■■□□ 2.37
ERGIC3-217ENST00000488935 CFTRP13569 1480 aa29.83■■■□□ 2.37
ERGIC3-217ENST00000488935 URB2Q14146 1524 aaKnown RBP29.68■■■□□ 2.34
ERGIC3-217ENST00000488935 CCDC88BA6NC98 1476 aa29.64■■■□□ 2.34
ERGIC3-217ENST00000488935 TRIM41Q8WV44 630 aa29.6■■■□□ 2.33
ERGIC3-217ENST00000488935 PRDM2Q13029 1718 aa29.53■■■□□ 2.32
ERGIC3-217ENST00000488935 OSCARQ8IYS5 282 aa29.38■■■□□ 2.29
ERGIC3-217ENST00000488935 ZNF608Q9ULD9 1512 aaPredicted RBP29.36■■■□□ 2.29
ERGIC3-217ENST00000488935 TOPBP1Q92547 1522 aa29.33■■■□□ 2.29
ERGIC3-217ENST00000488935 IFT140Q96RY7 1462 aa29.25■■■□□ 2.27
ERGIC3-217ENST00000488935 DNMBPQ6XZF7 1577 aa29.18■■■□□ 2.26
ERGIC3-217ENST00000488935 EIF4G3O43432 1585 aaKnown RBP29.12■■■□□ 2.25
ERGIC3-217ENST00000488935 ABCC8Q09428 1581 aa29.11■■■□□ 2.25
ERGIC3-217ENST00000488935 AQRO60306 1485 aaKnown RBP eCLIP29.1■■■□□ 2.253e-8■■■■■ 31.8
ERGIC3-217ENST00000488935 TARBP1Q13395 1621 aaKnown RBP29.05■■■□□ 2.24
ERGIC3-217ENST00000488935 POLA1P09884 1462 aaPredicted RBP29.04■■■□□ 2.24
ERGIC3-217ENST00000488935 RAD54L2Q9Y4B4 1467 aa29.04■■■□□ 2.24
ERGIC3-217ENST00000488935 RIMBP3CA6NJZ7 1639 aa29.03■■■□□ 2.24
ERGIC3-217ENST00000488935 RIMBP3BA6NNM3 1639 aa29.03■■■□□ 2.24
ERGIC3-217ENST00000488935 RIMBP3Q9UFD9 1639 aa29.03■■■□□ 2.24
ERGIC3-217ENST00000488935 FBLN2P98095 1184 aa28.98■■■□□ 2.23
ERGIC3-217ENST00000488935 SUPT5HO00267 1087 aaKnown RBP28.97■■■□□ 2.23
ERGIC3-217ENST00000488935 CHD1O14646 1710 aa28.95■■■□□ 2.23
ERGIC3-217ENST00000488935 TDRD9Q8NDG6 1382 aaKnown RBP28.94■■■□□ 2.22
ERGIC3-217ENST00000488935 SOGA1O94964 1423 aa28.92■■■□□ 2.22
ERGIC3-217ENST00000488935 ARHGEF11O15085 1522 aa28.9■■■□□ 2.22
ERGIC3-217ENST00000488935 FGD5Q6ZNL6 1462 aa28.88■■■□□ 2.21
ERGIC3-217ENST00000488935 CUX1P39880 1505 aa28.87■■■□□ 2.21
ERGIC3-217ENST00000488935 CYB5RLQ6IPT4 315 aa28.82■■■□□ 2.2
ERGIC3-217ENST00000488935 SNAPC4Q5SXM2 1469 aa28.75■■■□□ 2.19
ERGIC3-217ENST00000488935 CHMP7Q8WUX9 453 aaPredicted RBP28.66■■■□□ 2.18
ERGIC3-217ENST00000488935 ARAP1Q96P48 1450 aa28.66■■■□□ 2.18
ERGIC3-217ENST00000488935 WDR97A6NE52 1622 aa28.61■■■□□ 2.17
ERGIC3-217ENST00000488935 GRIN2BQ13224 1484 aa28.6■■■□□ 2.17
ERGIC3-217ENST00000488935 MAGI1Q96QZ7 1491 aaPredicted RBP28.55■■■□□ 2.16
ERGIC3-217ENST00000488935 PBRM1Q86U86 1689 aa28.54■■■□□ 2.16
ERGIC3-217ENST00000488935 GAPVD1Q14C86 1478 aa28.54■■■□□ 2.16
ERGIC3-217ENST00000488935 CLASP1Q7Z460 1538 aa28.53■■■□□ 2.16
ERGIC3-217ENST00000488935 TRHP20396 242 aaPredicted RBP28.5■■■□□ 2.15
ERGIC3-217ENST00000488935 SYNJ2O15056 1496 aa28.5■■■□□ 2.15
ERGIC3-217ENST00000488935 SYNJ1O43426 1573 aa28.49■■■□□ 2.15
ERGIC3-217ENST00000488935 ABCA10Q8WWZ4 1543 aa28.47■■■□□ 2.15
ERGIC3-217ENST00000488935 ABCA5Q8WWZ7 1642 aa28.44■■■□□ 2.14
ERGIC3-217ENST00000488935 WRNQ14191 1432 aaPredicted RBP eCLIP28.36■■■□□ 2.13
ERGIC3-217ENST00000488935 TOP2BQ02880 1626 aa28.33■■■□□ 2.13
ERGIC3-217ENST00000488935 BIVM-ERCC5R4GMW8 1640 aa28.32■■■□□ 2.12
ERGIC3-217ENST00000488935 ERCC6L2Q5T890 1561 aa28.25■■■□□ 2.11
ERGIC3-217ENST00000488935 GRIN2AQ12879 1464 aa28.25■■■□□ 2.11
ERGIC3-217ENST00000488935 ADAMTS12P58397 1594 aa28.24■■■□□ 2.11
ERGIC3-217ENST00000488935 CEP170Q5SW79 1584 aa28.2■■■□□ 2.11
ERGIC3-217ENST00000488935 FHAD1B1AJZ9 1412 aa28.14■■■□□ 2.1
ERGIC3-217ENST00000488935 NUP160Q12769 1436 aa28.13■■■□□ 2.09
ERGIC3-217ENST00000488935 ERICH3Q5RHP9 1530 aa28.08■■■□□ 2.08
ERGIC3-217ENST00000488935 SHROOM2Q13796 1616 aa28■■■□□ 2.07
ERGIC3-217ENST00000488935 PRG4Q92954 1404 aaPredicted RBP27.94■■■□□ 2.06
ERGIC3-217ENST00000488935 JPH4Q96JJ6 628 aa27.94■■■□□ 2.06
ERGIC3-217ENST00000488935 RUSC2Q8N2Y8 1516 aa27.84■■■□□ 2.05
ERGIC3-217ENST00000488935 IGF1RP08069 1367 aa27.84■■■□□ 2.05
Retrieved 100 of 20,778 RNA–protein pairs in 8.7 ms