RNA–Protein interactions for RNA: ENST00000488920.2

CCHCR1-215, Transcript of coiled-coil alpha-helical rod protein 1, humanhuman

TSL 3

Gene CCHCR1, Length 715 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCHCR1-215ENST00000488920 NISCHQ9Y2I1 1504 aa29.45■■■□□ 2.3
CCHCR1-215ENST00000488920 CCDC180Q9P1Z9 1646 aa26.21■■□□□ 1.79
CCHCR1-215ENST00000488920 ABCC9O60706 1549 aa26.19■■□□□ 1.78
CCHCR1-215ENST00000488920 DCAF8L2P0C7V8 631 aa24.95■■□□□ 1.58
CCHCR1-215ENST00000488920 RB1CC1Q8TDY2 1594 aa24.93■■□□□ 1.58
CCHCR1-215ENST00000488920 NACADO15069 1562 aa24.8■■□□□ 1.56
CCHCR1-215ENST00000488920 MYO15BQ96JP2 1530 aa24.51■■□□□ 1.51
CCHCR1-215ENST00000488920 PABPN1Q86U42 306 aaKnown RBP eCLIP24.5■■□□□ 1.51
CCHCR1-215ENST00000488920 DNAJC5BQ9UF47 199 aa24.46■■□□□ 1.51
CCHCR1-215ENST00000488920 ZCCHC6Q5VYS8 1495 aaKnown RBP24.42■■□□□ 1.5
CCHCR1-215ENST00000488920 DCAF1Q9Y4B6 1507 aa24.28■■□□□ 1.48
CCHCR1-215ENST00000488920 UNC13AQ9UPW8 1703 aa24.27■■□□□ 1.48
CCHCR1-215ENST00000488920 BICRAQ9NZM4 1560 aa24.2■■□□□ 1.46
CCHCR1-215ENST00000488920 SCRIBQ14160 1630 aa24■■□□□ 1.43
CCHCR1-215ENST00000488920 SHROOM4Q9ULL8 1493 aa23.84■■□□□ 1.41
CCHCR1-215ENST00000488920 CC2D2AQ9P2K1 1620 aa23.59■■□□□ 1.37
CCHCR1-215ENST00000488920 EIF4G1Q04637 1599 aaKnown RBP23.59■■□□□ 1.37
CCHCR1-215ENST00000488920 CECR2Q9BXF3 1484 aa23.55■■□□□ 1.36
CCHCR1-215ENST00000488920 NCAPD3P42695 1498 aa22.95■■□□□ 1.26
CCHCR1-215ENST00000488920 ATAD2BQ9ULI0 1458 aa22.92■■□□□ 1.26
CCHCR1-215ENST00000488920 SMARCA4P51532 1647 aa22.88■■□□□ 1.25
CCHCR1-215ENST00000488920 SMARCA2P51531 1590 aa22.81■■□□□ 1.24
CCHCR1-215ENST00000488920 BAZ1AQ9NRL2 1556 aaPredicted RBP22.81■■□□□ 1.24
CCHCR1-215ENST00000488920 HMGXB3Q12766 1538 aa22.72■■□□□ 1.23
CCHCR1-215ENST00000488920 MROH2BQ7Z745 1585 aa22.72■■□□□ 1.23
CCHCR1-215ENST00000488920 BAZ1BQ9UIG0 1483 aaKnown RBP22.69■■□□□ 1.22
CCHCR1-215ENST00000488920 PEG3Q9GZU2 1588 aa22.63■■□□□ 1.21
CCHCR1-215ENST00000488920 ERCC6Q03468 1493 aa22.58■■□□□ 1.2
CCHCR1-215ENST00000488920 NESP48681 1621 aa22.54■■□□□ 1.2
CCHCR1-215ENST00000488920 CUX2O14529 1486 aa22.41■■□□□ 1.18
CCHCR1-215ENST00000488920 WIZO95785 1651 aa22.41■■□□□ 1.18
CCHCR1-215ENST00000488920 RSF1Q96T23 1441 aaPredicted RBP22.35■■□□□ 1.17
CCHCR1-215ENST00000488920 LAMC3Q9Y6N6 1575 aa22.33■■□□□ 1.17
CCHCR1-215ENST00000488920 CADPSQ9ULU8 1353 aa22.29■■□□□ 1.16
CCHCR1-215ENST00000488920 PDS5BQ9NTI5 1447 aa22.28■■□□□ 1.16
CCHCR1-215ENST00000488920 DNAJC5Q9H3Z4 198 aa22.27■■□□□ 1.16
CCHCR1-215ENST00000488920 THOC2Q8NI27 1593 aaKnown RBP22.16■■□□□ 1.14
CCHCR1-215ENST00000488920 KIF21AQ7Z4S6 1674 aa22.14■■□□□ 1.14
CCHCR1-215ENST00000488920 TOP2AP11388 1531 aaKnown RBP22.13■■□□□ 1.13
CCHCR1-215ENST00000488920 CFTRP13569 1480 aa22.05■■□□□ 1.12
CCHCR1-215ENST00000488920 MRC2Q9UBG0 1479 aa22.04■■□□□ 1.12
CCHCR1-215ENST00000488920 FANCD2Q9BXW9 1451 aa22.02■■□□□ 1.12
CCHCR1-215ENST00000488920 CEP164Q9UPV0 1460 aa22■■□□□ 1.11
CCHCR1-215ENST00000488920 CCDC88BA6NC98 1476 aa21.96■■□□□ 1.11
CCHCR1-215ENST00000488920 WDR62O43379 1518 aa21.95■■□□□ 1.1
CCHCR1-215ENST00000488920 URB2Q14146 1524 aaKnown RBP21.81■■□□□ 1.08
CCHCR1-215ENST00000488920 PRDM2Q13029 1718 aa21.66■■□□□ 1.06
CCHCR1-215ENST00000488920 SUPT5HO00267 1087 aaKnown RBP21.63■■□□□ 1.05
CCHCR1-215ENST00000488920 TOPBP1Q92547 1522 aa21.6■■□□□ 1.05
CCHCR1-215ENST00000488920 IFT140Q96RY7 1462 aa21.56■■□□□ 1.04
CCHCR1-215ENST00000488920 ABCC8Q09428 1581 aa21.56■■□□□ 1.04
CCHCR1-215ENST00000488920 OSCARQ8IYS5 282 aa21.54■■□□□ 1.04
CCHCR1-215ENST00000488920 ZNF608Q9ULD9 1512 aaPredicted RBP21.54■■□□□ 1.04
CCHCR1-215ENST00000488920 DNMBPQ6XZF7 1577 aa21.51■■□□□ 1.03
CCHCR1-215ENST00000488920 TRIM41Q8WV44 630 aa21.43■■□□□ 1.02
CCHCR1-215ENST00000488920 POLA1P09884 1462 aaPredicted RBP21.4■■□□□ 1.02
CCHCR1-215ENST00000488920 AQRO60306 1485 aaKnown RBP eCLIP21.39■■□□□ 1.029e-15■■■■■ 48
CCHCR1-215ENST00000488920 RAD54L2Q9Y4B4 1467 aa21.37■■□□□ 1.01
CCHCR1-215ENST00000488920 SOGA1O94964 1423 aa21.37■■□□□ 1.01
CCHCR1-215ENST00000488920 TARBP1Q13395 1621 aaKnown RBP21.36■■□□□ 1.01
CCHCR1-215ENST00000488920 EIF4G3O43432 1585 aaKnown RBP21.34■■□□□ 1.01
CCHCR1-215ENST00000488920 CUX1P39880 1505 aa21.32■■□□□ 1
CCHCR1-215ENST00000488920 TDRD9Q8NDG6 1382 aaKnown RBP21.32■■□□□ 1
CCHCR1-215ENST00000488920 FGD5Q6ZNL6 1462 aa21.3■■□□□ 1
CCHCR1-215ENST00000488920 FBLN2P98095 1184 aa21.28■■□□□ 1
CCHCR1-215ENST00000488920 SNAPC4Q5SXM2 1469 aa21.13■□□□□ 0.97
CCHCR1-215ENST00000488920 CHMP7Q8WUX9 453 aaPredicted RBP21.13■□□□□ 0.97
CCHCR1-215ENST00000488920 RIMBP3CA6NJZ7 1639 aa21.11■□□□□ 0.97
CCHCR1-215ENST00000488920 RIMBP3BA6NNM3 1639 aa21.11■□□□□ 0.97
CCHCR1-215ENST00000488920 RIMBP3Q9UFD9 1639 aa21.11■□□□□ 0.97
CCHCR1-215ENST00000488920 CHD1O14646 1710 aa21.11■□□□□ 0.97
CCHCR1-215ENST00000488920 GRIN2BQ13224 1484 aa21.11■□□□□ 0.97
CCHCR1-215ENST00000488920 WDR97A6NE52 1622 aa21.1■□□□□ 0.97
CCHCR1-215ENST00000488920 ARHGEF11O15085 1522 aa21.09■□□□□ 0.97
CCHCR1-215ENST00000488920 GAPVD1Q14C86 1478 aa21.07■□□□□ 0.96
CCHCR1-215ENST00000488920 WRNQ14191 1432 aaPredicted RBP eCLIP21.06■□□□□ 0.96
CCHCR1-215ENST00000488920 ABCA10Q8WWZ4 1543 aa21.06■□□□□ 0.96
CCHCR1-215ENST00000488920 MAGI1Q96QZ7 1491 aaPredicted RBP21.06■□□□□ 0.96
CCHCR1-215ENST00000488920 CYB5RLQ6IPT4 315 aa21.05■□□□□ 0.96
CCHCR1-215ENST00000488920 SYNJ2O15056 1496 aa21.01■□□□□ 0.95
CCHCR1-215ENST00000488920 SYNJ1O43426 1573 aa20.99■□□□□ 0.95
CCHCR1-215ENST00000488920 TOP2BQ02880 1626 aa20.99■□□□□ 0.95
CCHCR1-215ENST00000488920 ABCA5Q8WWZ7 1642 aa20.96■□□□□ 0.95
CCHCR1-215ENST00000488920 BIVM-ERCC5R4GMW8 1640 aa20.95■□□□□ 0.94
CCHCR1-215ENST00000488920 PBRM1Q86U86 1689 aa20.93■□□□□ 0.94
CCHCR1-215ENST00000488920 ARAP1Q96P48 1450 aa20.92■□□□□ 0.94
CCHCR1-215ENST00000488920 CLASP1Q7Z460 1538 aa20.92■□□□□ 0.94
CCHCR1-215ENST00000488920 GRIN2AQ12879 1464 aa20.82■□□□□ 0.92
CCHCR1-215ENST00000488920 FHAD1B1AJZ9 1412 aa20.82■□□□□ 0.92
CCHCR1-215ENST00000488920 ADAMTS12P58397 1594 aa20.8■□□□□ 0.92
CCHCR1-215ENST00000488920 ERICH3Q5RHP9 1530 aa20.78■□□□□ 0.92
CCHCR1-215ENST00000488920 TRHP20396 242 aaPredicted RBP20.76■□□□□ 0.91
CCHCR1-215ENST00000488920 NUP160Q12769 1436 aa20.75■□□□□ 0.91
CCHCR1-215ENST00000488920 CEP170Q5SW79 1584 aa20.72■□□□□ 0.91
CCHCR1-215ENST00000488920 IGF1RP08069 1367 aa20.67■□□□□ 0.9
CCHCR1-215ENST00000488920 KIF27Q86VH2 1401 aa20.66■□□□□ 0.9
CCHCR1-215ENST00000488920 ERCC6L2Q5T890 1561 aa20.66■□□□□ 0.9
CCHCR1-215ENST00000488920 JPH4Q96JJ6 628 aa20.64■□□□□ 0.89
CCHCR1-215ENST00000488920 PRG4Q92954 1404 aaPredicted RBP20.59■□□□□ 0.89
CCHCR1-215ENST00000488920 SHROOM2Q13796 1616 aa20.56■□□□□ 0.88
Retrieved 100 of 20,778 RNA–protein pairs in 71.4 ms