RNA–Protein interactions for RNA: ENST00000488833.1

ATG9A-222, Transcript of autophagy related 9A, humanhuman

TSL 2

Gene ATG9A, Length 487 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATG9A-222ENST00000488833 NISCHQ9Y2I1 1504 aa45.64■■■■■ 4.9
ATG9A-222ENST00000488833 CCDC180Q9P1Z9 1646 aa40.92■■■■■ 4.14
ATG9A-222ENST00000488833 ABCC9O60706 1549 aa40.72■■■■■ 4.11
ATG9A-222ENST00000488833 RB1CC1Q8TDY2 1594 aa38.84■■■■□ 3.81
ATG9A-222ENST00000488833 NACADO15069 1562 aa38.61■■■■□ 3.77
ATG9A-222ENST00000488833 DCAF8L2P0C7V8 631 aa38.41■■■■□ 3.74
ATG9A-222ENST00000488833 MYO15BQ96JP2 1530 aa38.12■■■■□ 3.69
ATG9A-222ENST00000488833 UNC13AQ9UPW8 1703 aa37.98■■■■□ 3.67
ATG9A-222ENST00000488833 DNAJC5BQ9UF47 199 aa37.94■■■■□ 3.66
ATG9A-222ENST00000488833 PABPN1Q86U42 306 aaKnown RBP eCLIP37.9■■■■□ 3.66
ATG9A-222ENST00000488833 ZCCHC6Q5VYS8 1495 aaKnown RBP37.89■■■■□ 3.66
ATG9A-222ENST00000488833 DCAF1Q9Y4B6 1507 aa37.71■■■■□ 3.63
ATG9A-222ENST00000488833 BICRAQ9NZM4 1560 aa37.69■■■■□ 3.62
ATG9A-222ENST00000488833 SCRIBQ14160 1630 aa37.32■■■■□ 3.56
ATG9A-222ENST00000488833 SHROOM4Q9ULL8 1493 aa37.21■■■■□ 3.55
ATG9A-222ENST00000488833 CC2D2AQ9P2K1 1620 aa36.79■■■■□ 3.48
ATG9A-222ENST00000488833 EIF4G1Q04637 1599 aaKnown RBP36.76■■■■□ 3.48
ATG9A-222ENST00000488833 CECR2Q9BXF3 1484 aa36.65■■■■□ 3.46
ATG9A-222ENST00000488833 NCAPD3P42695 1498 aa35.6■■■■□ 3.29
ATG9A-222ENST00000488833 SMARCA4P51532 1647 aa35.59■■■■□ 3.29
ATG9A-222ENST00000488833 ATAD2BQ9ULI0 1458 aa35.54■■■■□ 3.28
ATG9A-222ENST00000488833 SMARCA2P51531 1590 aa35.48■■■■□ 3.27
ATG9A-222ENST00000488833 BAZ1AQ9NRL2 1556 aaPredicted RBP35.43■■■■□ 3.26
ATG9A-222ENST00000488833 HMGXB3Q12766 1538 aa35.42■■■■□ 3.26
ATG9A-222ENST00000488833 BAZ1BQ9UIG0 1483 aaKnown RBP35.24■■■■□ 3.23
ATG9A-222ENST00000488833 PEG3Q9GZU2 1588 aa35.21■■■■□ 3.23
ATG9A-222ENST00000488833 MROH2BQ7Z745 1585 aa35.17■■■■□ 3.22
ATG9A-222ENST00000488833 ERCC6Q03468 1493 aa35.16■■■■□ 3.22
ATG9A-222ENST00000488833 NESP48681 1621 aa35.03■■■■□ 3.2
ATG9A-222ENST00000488833 CUX2O14529 1486 aa35.01■■■■□ 3.19
ATG9A-222ENST00000488833 LAMC3Q9Y6N6 1575 aa34.82■■■■□ 3.16
ATG9A-222ENST00000488833 WIZO95785 1651 aa34.78■■■■□ 3.16
ATG9A-222ENST00000488833 DNAJC5Q9H3Z4 198 aa34.71■■■■□ 3.15
ATG9A-222ENST00000488833 THOC2Q8NI27 1593 aaKnown RBP34.66■■■■□ 3.14
ATG9A-222ENST00000488833 KIF21AQ7Z4S6 1674 aa34.62■■■■□ 3.13
ATG9A-222ENST00000488833 PDS5BQ9NTI5 1447 aa34.59■■■■□ 3.13
ATG9A-222ENST00000488833 CADPSQ9ULU8 1353 aa34.54■■■■□ 3.12
ATG9A-222ENST00000488833 RSF1Q96T23 1441 aaPredicted RBP34.49■■■■□ 3.11
ATG9A-222ENST00000488833 TOP2AP11388 1531 aaKnown RBP34.36■■■■□ 3.09
ATG9A-222ENST00000488833 MRC2Q9UBG0 1479 aa34.31■■■■□ 3.08
ATG9A-222ENST00000488833 CEP164Q9UPV0 1460 aa34.21■■■■□ 3.07
ATG9A-222ENST00000488833 WDR62O43379 1518 aa34.21■■■■□ 3.07
ATG9A-222ENST00000488833 CFTRP13569 1480 aa34.2■■■■□ 3.06
ATG9A-222ENST00000488833 FANCD2Q9BXW9 1451 aa34.18■■■■□ 3.06
ATG9A-222ENST00000488833 PRDM2Q13029 1718 aa33.94■■■■□ 3.02
ATG9A-222ENST00000488833 CCDC88BA6NC98 1476 aa33.93■■■■□ 3.02
ATG9A-222ENST00000488833 URB2Q14146 1524 aaKnown RBP33.89■■■■□ 3.02
ATG9A-222ENST00000488833 TOPBP1Q92547 1522 aa33.55■■■□□ 2.96
ATG9A-222ENST00000488833 IFT140Q96RY7 1462 aa33.5■■■□□ 2.95
ATG9A-222ENST00000488833 ABCC8Q09428 1581 aa33.47■■■□□ 2.95
ATG9A-222ENST00000488833 DNMBPQ6XZF7 1577 aa33.47■■■□□ 2.95
ATG9A-222ENST00000488833 ZNF608Q9ULD9 1512 aaPredicted RBP33.43■■■□□ 2.94
ATG9A-222ENST00000488833 OSCARQ8IYS5 282 aa33.39■■■□□ 2.94
ATG9A-222ENST00000488833 TRIM41Q8WV44 630 aa33.32■■■□□ 2.92
ATG9A-222ENST00000488833 EIF4G3O43432 1585 aaKnown RBP33.3■■■□□ 2.92
ATG9A-222ENST00000488833 TARBP1Q13395 1621 aaKnown RBP33.24■■■□□ 2.91
ATG9A-222ENST00000488833 POLA1P09884 1462 aaPredicted RBP33.23■■■□□ 2.91
ATG9A-222ENST00000488833 AQRO60306 1485 aaKnown RBP eCLIP33.14■■■□□ 2.92e-7■■■■■ 36.4
ATG9A-222ENST00000488833 SUPT5HO00267 1087 aaKnown RBP33.11■■■□□ 2.89
ATG9A-222ENST00000488833 RAD54L2Q9Y4B4 1467 aa33.09■■■□□ 2.89
ATG9A-222ENST00000488833 FGD5Q6ZNL6 1462 aa33.05■■■□□ 2.88
ATG9A-222ENST00000488833 SOGA1O94964 1423 aa33.05■■■□□ 2.88
ATG9A-222ENST00000488833 CUX1P39880 1505 aa33.05■■■□□ 2.88
ATG9A-222ENST00000488833 CHD1O14646 1710 aa33.02■■■□□ 2.88
ATG9A-222ENST00000488833 RIMBP3CA6NJZ7 1639 aa33.01■■■□□ 2.87
ATG9A-222ENST00000488833 RIMBP3BA6NNM3 1639 aa33.01■■■□□ 2.87
ATG9A-222ENST00000488833 RIMBP3Q9UFD9 1639 aa33.01■■■□□ 2.87
ATG9A-222ENST00000488833 TDRD9Q8NDG6 1382 aaKnown RBP32.96■■■□□ 2.87
ATG9A-222ENST00000488833 WDR97A6NE52 1622 aa32.93■■■□□ 2.86
ATG9A-222ENST00000488833 ARHGEF11O15085 1522 aa32.92■■■□□ 2.86
ATG9A-222ENST00000488833 FBLN2P98095 1184 aa32.89■■■□□ 2.86
ATG9A-222ENST00000488833 SNAPC4Q5SXM2 1469 aa32.85■■■□□ 2.85
ATG9A-222ENST00000488833 GRIN2BQ13224 1484 aa32.77■■■□□ 2.84
ATG9A-222ENST00000488833 MAGI1Q96QZ7 1491 aaPredicted RBP32.75■■■□□ 2.83
ATG9A-222ENST00000488833 PBRM1Q86U86 1689 aa32.69■■■□□ 2.82
ATG9A-222ENST00000488833 GAPVD1Q14C86 1478 aa32.67■■■□□ 2.82
ATG9A-222ENST00000488833 ABCA10Q8WWZ4 1543 aa32.67■■■□□ 2.82
ATG9A-222ENST00000488833 CHMP7Q8WUX9 453 aaPredicted RBP32.67■■■□□ 2.82
ATG9A-222ENST00000488833 SYNJ2O15056 1496 aa32.64■■■□□ 2.82
ATG9A-222ENST00000488833 ABCA5Q8WWZ7 1642 aa32.63■■■□□ 2.81
ATG9A-222ENST00000488833 SYNJ1O43426 1573 aa32.63■■■□□ 2.81
ATG9A-222ENST00000488833 CLASP1Q7Z460 1538 aa32.62■■■□□ 2.81
ATG9A-222ENST00000488833 CYB5RLQ6IPT4 315 aa32.61■■■□□ 2.81
ATG9A-222ENST00000488833 ARAP1Q96P48 1450 aa32.61■■■□□ 2.81
ATG9A-222ENST00000488833 BIVM-ERCC5R4GMW8 1640 aa32.59■■■□□ 2.81
ATG9A-222ENST00000488833 WRNQ14191 1432 aaPredicted RBP eCLIP32.58■■■□□ 2.81
ATG9A-222ENST00000488833 TOP2BQ02880 1626 aa32.58■■■□□ 2.81
ATG9A-222ENST00000488833 ADAMTS12P58397 1594 aa32.39■■■□□ 2.78
ATG9A-222ENST00000488833 GRIN2AQ12879 1464 aa32.35■■■□□ 2.77
ATG9A-222ENST00000488833 ERICH3Q5RHP9 1530 aa32.27■■■□□ 2.76
ATG9A-222ENST00000488833 FHAD1B1AJZ9 1412 aa32.26■■■□□ 2.76
ATG9A-222ENST00000488833 CEP170Q5SW79 1584 aa32.24■■■□□ 2.75
ATG9A-222ENST00000488833 NUP160Q12769 1436 aa32.22■■■□□ 2.75
ATG9A-222ENST00000488833 TRHP20396 242 aaPredicted RBP32.21■■■□□ 2.75
ATG9A-222ENST00000488833 ERCC6L2Q5T890 1561 aa32.12■■■□□ 2.73
ATG9A-222ENST00000488833 SHROOM2Q13796 1616 aa32.08■■■□□ 2.73
ATG9A-222ENST00000488833 RUSC2Q8N2Y8 1516 aa31.93■■■□□ 2.7
ATG9A-222ENST00000488833 KIF27Q86VH2 1401 aa31.92■■■□□ 2.7
ATG9A-222ENST00000488833 PRG4Q92954 1404 aaPredicted RBP31.91■■■□□ 2.7
ATG9A-222ENST00000488833 CUL7Q14999 1698 aa31.87■■■□□ 2.69
Retrieved 100 of 20,778 RNA–protein pairs in 105 ms