RNA–Protein interactions for RNA: ENST00000488384.1

ERGIC3-216, Transcript of ERGIC and golgi 3, humanhuman

TSL 2

Gene ERGIC3, Length 766 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ERGIC3-216ENST00000488384 NISCHQ9Y2I1 1504 aa39.03■■■■□ 3.84
ERGIC3-216ENST00000488384 CCDC180Q9P1Z9 1646 aa34.72■■■■□ 3.15
ERGIC3-216ENST00000488384 ABCC9O60706 1549 aa34.23■■■■□ 3.07
ERGIC3-216ENST00000488384 RB1CC1Q8TDY2 1594 aa32.69■■■□□ 2.82
ERGIC3-216ENST00000488384 NACADO15069 1562 aa32.58■■■□□ 2.81
ERGIC3-216ENST00000488384 ZCCHC6Q5VYS8 1495 aaKnown RBP32.55■■■□□ 2.8
ERGIC3-216ENST00000488384 DCAF8L2P0C7V8 631 aa32.44■■■□□ 2.78
ERGIC3-216ENST00000488384 MYO15BQ96JP2 1530 aa32.42■■■□□ 2.78
ERGIC3-216ENST00000488384 DCAF1Q9Y4B6 1507 aa32.31■■■□□ 2.76
ERGIC3-216ENST00000488384 UNC13AQ9UPW8 1703 aa32.19■■■□□ 2.74
ERGIC3-216ENST00000488384 DNAJC5BQ9UF47 199 aa31.95■■■□□ 2.71
ERGIC3-216ENST00000488384 BICRAQ9NZM4 1560 aa31.89■■■□□ 2.7
ERGIC3-216ENST00000488384 PABPN1Q86U42 306 aaKnown RBP eCLIP31.79■■■□□ 2.685e-10■■□□□ 14.5
ERGIC3-216ENST00000488384 SCRIBQ14160 1630 aa31.67■■■□□ 2.66
ERGIC3-216ENST00000488384 SHROOM4Q9ULL8 1493 aa31.35■■■□□ 2.61
ERGIC3-216ENST00000488384 CC2D2AQ9P2K1 1620 aa31.02■■■□□ 2.56
ERGIC3-216ENST00000488384 EIF4G1Q04637 1599 aaKnown RBP31■■■□□ 2.55
ERGIC3-216ENST00000488384 CECR2Q9BXF3 1484 aa30.79■■■□□ 2.52
ERGIC3-216ENST00000488384 SMARCA4P51532 1647 aa30.3■■■□□ 2.44
ERGIC3-216ENST00000488384 BAZ1AQ9NRL2 1556 aaPredicted RBP30.24■■■□□ 2.43
ERGIC3-216ENST00000488384 MROH2BQ7Z745 1585 aa30.09■■■□□ 2.41
ERGIC3-216ENST00000488384 ATAD2BQ9ULI0 1458 aa30.09■■■□□ 2.41
ERGIC3-216ENST00000488384 SMARCA2P51531 1590 aa30.06■■■□□ 2.4
ERGIC3-216ENST00000488384 NCAPD3P42695 1498 aa30.06■■■□□ 2.4
ERGIC3-216ENST00000488384 PEG3Q9GZU2 1588 aa30.01■■■□□ 2.39
ERGIC3-216ENST00000488384 HMGXB3Q12766 1538 aa29.96■■■□□ 2.39
ERGIC3-216ENST00000488384 BAZ1BQ9UIG0 1483 aaKnown RBP29.85■■■□□ 2.37
ERGIC3-216ENST00000488384 WIZO95785 1651 aa29.76■■■□□ 2.36
ERGIC3-216ENST00000488384 RSF1Q96T23 1441 aaPredicted RBP29.74■■■□□ 2.35
ERGIC3-216ENST00000488384 NESP48681 1621 aa29.53■■■□□ 2.32
ERGIC3-216ENST00000488384 TOP2AP11388 1531 aaKnown RBP29.46■■■□□ 2.31
ERGIC3-216ENST00000488384 ERCC6Q03468 1493 aa29.43■■■□□ 2.3
ERGIC3-216ENST00000488384 CUX2O14529 1486 aa29.42■■■□□ 2.3
ERGIC3-216ENST00000488384 LAMC3Q9Y6N6 1575 aa29.33■■■□□ 2.29
ERGIC3-216ENST00000488384 THOC2Q8NI27 1593 aaKnown RBP29.29■■■□□ 2.28
ERGIC3-216ENST00000488384 KIF21AQ7Z4S6 1674 aa29.25■■■□□ 2.27
ERGIC3-216ENST00000488384 CADPSQ9ULU8 1353 aa29.16■■■□□ 2.26
ERGIC3-216ENST00000488384 CCDC88BA6NC98 1476 aa29.08■■■□□ 2.25
ERGIC3-216ENST00000488384 DNAJC5Q9H3Z4 198 aa29.07■■■□□ 2.24
ERGIC3-216ENST00000488384 CFTRP13569 1480 aa29.04■■■□□ 2.24
ERGIC3-216ENST00000488384 PDS5BQ9NTI5 1447 aa29.03■■■□□ 2.24
ERGIC3-216ENST00000488384 SUPT5HO00267 1087 aaKnown RBP28.92■■■□□ 2.22
ERGIC3-216ENST00000488384 PRDM2Q13029 1718 aa28.86■■■□□ 2.21
ERGIC3-216ENST00000488384 MRC2Q9UBG0 1479 aa28.86■■■□□ 2.21
ERGIC3-216ENST00000488384 WDR62O43379 1518 aa28.86■■■□□ 2.21
ERGIC3-216ENST00000488384 FANCD2Q9BXW9 1451 aa28.85■■■□□ 2.21
ERGIC3-216ENST00000488384 CEP164Q9UPV0 1460 aa28.83■■■□□ 2.21
ERGIC3-216ENST00000488384 URB2Q14146 1524 aaKnown RBP28.59■■■□□ 2.17
ERGIC3-216ENST00000488384 TOPBP1Q92547 1522 aa28.41■■■□□ 2.14
ERGIC3-216ENST00000488384 DNMBPQ6XZF7 1577 aa28.4■■■□□ 2.14
ERGIC3-216ENST00000488384 ABCC8Q09428 1581 aa28.37■■■□□ 2.13
ERGIC3-216ENST00000488384 CUX1P39880 1505 aa28.23■■■□□ 2.11
ERGIC3-216ENST00000488384 IFT140Q96RY7 1462 aa28.21■■■□□ 2.11
ERGIC3-216ENST00000488384 ZNF608Q9ULD9 1512 aaPredicted RBP28.18■■■□□ 2.1
ERGIC3-216ENST00000488384 POLA1P09884 1462 aaPredicted RBP28.18■■■□□ 2.1
ERGIC3-216ENST00000488384 TARBP1Q13395 1621 aaKnown RBP28.13■■■□□ 2.09
ERGIC3-216ENST00000488384 FGD5Q6ZNL6 1462 aa28.12■■■□□ 2.09
ERGIC3-216ENST00000488384 EIF4G3O43432 1585 aaKnown RBP28.1■■■□□ 2.09
ERGIC3-216ENST00000488384 RAD54L2Q9Y4B4 1467 aa28.04■■■□□ 2.08
ERGIC3-216ENST00000488384 WRNQ14191 1432 aaPredicted RBP eCLIP28.03■■■□□ 2.08
ERGIC3-216ENST00000488384 BIVM-ERCC5R4GMW8 1640 aa28.01■■■□□ 2.07
ERGIC3-216ENST00000488384 SYNJ1O43426 1573 aa28.01■■■□□ 2.07
ERGIC3-216ENST00000488384 SOGA1O94964 1423 aa28.01■■■□□ 2.07
ERGIC3-216ENST00000488384 TOP2BQ02880 1626 aa28■■■□□ 2.07
ERGIC3-216ENST00000488384 WDR97A6NE52 1622 aa27.94■■■□□ 2.06
ERGIC3-216ENST00000488384 OSCARQ8IYS5 282 aa27.92■■■□□ 2.06
ERGIC3-216ENST00000488384 AQRO60306 1485 aaKnown RBP eCLIP27.91■■■□□ 2.063e-8■■■■■ 31.8
ERGIC3-216ENST00000488384 CHD1O14646 1710 aa27.88■■■□□ 2.05
ERGIC3-216ENST00000488384 TDRD9Q8NDG6 1382 aaKnown RBP27.86■■■□□ 2.05
ERGIC3-216ENST00000488384 ABCA10Q8WWZ4 1543 aa27.84■■■□□ 2.05
ERGIC3-216ENST00000488384 RIMBP3CA6NJZ7 1639 aa27.81■■■□□ 2.04
ERGIC3-216ENST00000488384 RIMBP3BA6NNM3 1639 aa27.81■■■□□ 2.04
ERGIC3-216ENST00000488384 RIMBP3Q9UFD9 1639 aa27.81■■■□□ 2.04
ERGIC3-216ENST00000488384 TRIM41Q8WV44 630 aa27.79■■■□□ 2.04
ERGIC3-216ENST00000488384 ABCA5Q8WWZ7 1642 aa27.77■■■□□ 2.04
ERGIC3-216ENST00000488384 GAPVD1Q14C86 1478 aa27.71■■■□□ 2.03
ERGIC3-216ENST00000488384 PBRM1Q86U86 1689 aa27.71■■■□□ 2.03
ERGIC3-216ENST00000488384 GRIN2BQ13224 1484 aa27.7■■■□□ 2.03
ERGIC3-216ENST00000488384 SNAPC4Q5SXM2 1469 aa27.7■■■□□ 2.02
ERGIC3-216ENST00000488384 ARHGEF11O15085 1522 aa27.69■■■□□ 2.02
ERGIC3-216ENST00000488384 MAGI1Q96QZ7 1491 aaPredicted RBP27.65■■■□□ 2.02
ERGIC3-216ENST00000488384 CLASP1Q7Z460 1538 aa27.55■■■□□ 2
ERGIC3-216ENST00000488384 SYNJ2O15056 1496 aa27.53■■■□□ 2
ERGIC3-216ENST00000488384 ADAMTS12P58397 1594 aa27.51■■□□□ 1.99
ERGIC3-216ENST00000488384 ERICH3Q5RHP9 1530 aa27.51■■□□□ 1.99
ERGIC3-216ENST00000488384 FBLN2P98095 1184 aa27.49■■□□□ 1.99
ERGIC3-216ENST00000488384 ARAP1Q96P48 1450 aa27.46■■□□□ 1.99
ERGIC3-216ENST00000488384 CHMP7Q8WUX9 453 aaPredicted RBP27.43■■□□□ 1.98
ERGIC3-216ENST00000488384 KIF27Q86VH2 1401 aa27.42■■□□□ 1.98
ERGIC3-216ENST00000488384 FHAD1B1AJZ9 1412 aa27.39■■□□□ 1.97
ERGIC3-216ENST00000488384 GRIN2AQ12879 1464 aa27.38■■□□□ 1.97
ERGIC3-216ENST00000488384 IGF1RP08069 1367 aa27.29■■□□□ 1.96
ERGIC3-216ENST00000488384 CUL7Q14999 1698 aa27.28■■□□□ 1.96
ERGIC3-216ENST00000488384 CEP170Q5SW79 1584 aa27.26■■□□□ 1.96
ERGIC3-216ENST00000488384 NUP160Q12769 1436 aa27.26■■□□□ 1.95
ERGIC3-216ENST00000488384 CYB5RLQ6IPT4 315 aa27.26■■□□□ 1.95
ERGIC3-216ENST00000488384 RUSC2Q8N2Y8 1516 aa27.21■■□□□ 1.95
ERGIC3-216ENST00000488384 ERCC6L2Q5T890 1561 aa27.14■■□□□ 1.94
ERGIC3-216ENST00000488384 SHROOM2Q13796 1616 aa27.12■■□□□ 1.93
ERGIC3-216ENST00000488384 CARMIL1Q5VZK9 1371 aa27.12■■□□□ 1.93
Retrieved 100 of 20,778 RNA–protein pairs in 42.9 ms