RNA–Protein interactions for RNA: ENST00000488376.2

SYNE1-226, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 2

Gene SYNE1, Length 414 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-226ENST00000488376 NISCHQ9Y2I1 1504 aa34.17■■■■□ 3.06
SYNE1-226ENST00000488376 CCDC180Q9P1Z9 1646 aa30.36■■■□□ 2.45
SYNE1-226ENST00000488376 ABCC9O60706 1549 aa29.99■■■□□ 2.39
SYNE1-226ENST00000488376 RB1CC1Q8TDY2 1594 aa28.67■■■□□ 2.18
SYNE1-226ENST00000488376 DCAF8L2P0C7V8 631 aa28.64■■■□□ 2.18
SYNE1-226ENST00000488376 NACADO15069 1562 aa28.58■■■□□ 2.17
SYNE1-226ENST00000488376 ZCCHC6Q5VYS8 1495 aaKnown RBP28.45■■■□□ 2.14
SYNE1-226ENST00000488376 MYO15BQ96JP2 1530 aa28.34■■■□□ 2.13
SYNE1-226ENST00000488376 DCAF1Q9Y4B6 1507 aa28.19■■■□□ 2.1
SYNE1-226ENST00000488376 UNC13AQ9UPW8 1703 aa28.05■■■□□ 2.08
SYNE1-226ENST00000488376 PABPN1Q86U42 306 aaKnown RBP eCLIP28.03■■■□□ 2.08
SYNE1-226ENST00000488376 BICRAQ9NZM4 1560 aa27.91■■■□□ 2.06
SYNE1-226ENST00000488376 SCRIBQ14160 1630 aa27.81■■■□□ 2.04
SYNE1-226ENST00000488376 DNAJC5BQ9UF47 199 aa27.73■■■□□ 2.03
SYNE1-226ENST00000488376 SHROOM4Q9ULL8 1493 aa27.44■■□□□ 1.98
SYNE1-226ENST00000488376 EIF4G1Q04637 1599 aaKnown RBP27.14■■□□□ 1.93
SYNE1-226ENST00000488376 CC2D2AQ9P2K1 1620 aa27.08■■□□□ 1.93
SYNE1-226ENST00000488376 CECR2Q9BXF3 1484 aa26.92■■□□□ 1.9
SYNE1-226ENST00000488376 SMARCA4P51532 1647 aa26.54■■□□□ 1.84
SYNE1-226ENST00000488376 ATAD2BQ9ULI0 1458 aa26.45■■□□□ 1.82
SYNE1-226ENST00000488376 BAZ1AQ9NRL2 1556 aaPredicted RBP26.45■■□□□ 1.82
SYNE1-226ENST00000488376 NCAPD3P42695 1498 aa26.42■■□□□ 1.82
SYNE1-226ENST00000488376 MROH2BQ7Z745 1585 aa26.39■■□□□ 1.82
SYNE1-226ENST00000488376 SMARCA2P51531 1590 aa26.34■■□□□ 1.81
SYNE1-226ENST00000488376 HMGXB3Q12766 1538 aa26.26■■□□□ 1.79
SYNE1-226ENST00000488376 PEG3Q9GZU2 1588 aa26.25■■□□□ 1.79
SYNE1-226ENST00000488376 BAZ1BQ9UIG0 1483 aaKnown RBP26.2■■□□□ 1.78
SYNE1-226ENST00000488376 WIZO95785 1651 aa26.08■■□□□ 1.77
SYNE1-226ENST00000488376 RSF1Q96T23 1441 aaPredicted RBP26.02■■□□□ 1.76
SYNE1-226ENST00000488376 NESP48681 1621 aa25.94■■□□□ 1.74
SYNE1-226ENST00000488376 ERCC6Q03468 1493 aa25.79■■□□□ 1.72
SYNE1-226ENST00000488376 TOP2AP11388 1531 aaKnown RBP25.75■■□□□ 1.71
SYNE1-226ENST00000488376 LAMC3Q9Y6N6 1575 aa25.71■■□□□ 1.71
SYNE1-226ENST00000488376 CADPSQ9ULU8 1353 aa25.65■■□□□ 1.7
SYNE1-226ENST00000488376 KIF21AQ7Z4S6 1674 aa25.55■■□□□ 1.68
SYNE1-226ENST00000488376 PDS5BQ9NTI5 1447 aa25.54■■□□□ 1.68
SYNE1-226ENST00000488376 CUX2O14529 1486 aa25.53■■□□□ 1.68
SYNE1-226ENST00000488376 THOC2Q8NI27 1593 aaKnown RBP25.52■■□□□ 1.68
SYNE1-226ENST00000488376 CCDC88BA6NC98 1476 aa25.49■■□□□ 1.67
SYNE1-226ENST00000488376 CFTRP13569 1480 aa25.48■■□□□ 1.67
SYNE1-226ENST00000488376 FANCD2Q9BXW9 1451 aa25.38■■□□□ 1.65
SYNE1-226ENST00000488376 MRC2Q9UBG0 1479 aa25.34■■□□□ 1.65
SYNE1-226ENST00000488376 CEP164Q9UPV0 1460 aa25.34■■□□□ 1.65
SYNE1-226ENST00000488376 SUPT5HO00267 1087 aaKnown RBP25.27■■□□□ 1.64
SYNE1-226ENST00000488376 WDR62O43379 1518 aa25.27■■□□□ 1.64
SYNE1-226ENST00000488376 URB2Q14146 1524 aaKnown RBP25.18■■□□□ 1.62
SYNE1-226ENST00000488376 PRDM2Q13029 1718 aa25.18■■□□□ 1.62
SYNE1-226ENST00000488376 DNAJC5Q9H3Z4 198 aa24.97■■□□□ 1.59
SYNE1-226ENST00000488376 TOPBP1Q92547 1522 aa24.96■■□□□ 1.59
SYNE1-226ENST00000488376 DNMBPQ6XZF7 1577 aa24.89■■□□□ 1.58
SYNE1-226ENST00000488376 ABCC8Q09428 1581 aa24.83■■□□□ 1.57
SYNE1-226ENST00000488376 ZNF608Q9ULD9 1512 aaPredicted RBP24.81■■□□□ 1.56
SYNE1-226ENST00000488376 IFT140Q96RY7 1462 aa24.79■■□□□ 1.56
SYNE1-226ENST00000488376 CUX1P39880 1505 aa24.76■■□□□ 1.55
SYNE1-226ENST00000488376 POLA1P09884 1462 aaPredicted RBP24.76■■□□□ 1.55
SYNE1-226ENST00000488376 TARBP1Q13395 1621 aaKnown RBP24.71■■□□□ 1.55
SYNE1-226ENST00000488376 RAD54L2Q9Y4B4 1467 aa24.69■■□□□ 1.54
SYNE1-226ENST00000488376 FGD5Q6ZNL6 1462 aa24.68■■□□□ 1.54
SYNE1-226ENST00000488376 EIF4G3O43432 1585 aaKnown RBP24.64■■□□□ 1.54
SYNE1-226ENST00000488376 AQRO60306 1485 aaKnown RBP eCLIP24.63■■□□□ 1.53
SYNE1-226ENST00000488376 SOGA1O94964 1423 aa24.62■■□□□ 1.53
SYNE1-226ENST00000488376 TDRD9Q8NDG6 1382 aaKnown RBP24.55■■□□□ 1.52
SYNE1-226ENST00000488376 WRNQ14191 1432 aaPredicted RBP eCLIP24.5■■□□□ 1.51
SYNE1-226ENST00000488376 SYNJ1O43426 1573 aa24.5■■□□□ 1.51
SYNE1-226ENST00000488376 OSCARQ8IYS5 282 aa24.45■■□□□ 1.5
SYNE1-226ENST00000488376 WDR97A6NE52 1622 aa24.45■■□□□ 1.5
SYNE1-226ENST00000488376 TOP2BQ02880 1626 aa24.44■■□□□ 1.5
SYNE1-226ENST00000488376 BIVM-ERCC5R4GMW8 1640 aa24.43■■□□□ 1.5
SYNE1-226ENST00000488376 ABCA10Q8WWZ4 1543 aa24.39■■□□□ 1.49
SYNE1-226ENST00000488376 SNAPC4Q5SXM2 1469 aa24.37■■□□□ 1.49
SYNE1-226ENST00000488376 GRIN2BQ13224 1484 aa24.33■■□□□ 1.49
SYNE1-226ENST00000488376 GAPVD1Q14C86 1478 aa24.33■■□□□ 1.49
SYNE1-226ENST00000488376 CHD1O14646 1710 aa24.33■■□□□ 1.49
SYNE1-226ENST00000488376 ABCA5Q8WWZ7 1642 aa24.32■■□□□ 1.48
SYNE1-226ENST00000488376 FBLN2P98095 1184 aa24.32■■□□□ 1.48
SYNE1-226ENST00000488376 PBRM1Q86U86 1689 aa24.27■■□□□ 1.48
SYNE1-226ENST00000488376 MAGI1Q96QZ7 1491 aaPredicted RBP24.26■■□□□ 1.47
SYNE1-226ENST00000488376 SYNJ2O15056 1496 aa24.19■■□□□ 1.46
SYNE1-226ENST00000488376 CHMP7Q8WUX9 453 aaPredicted RBP24.19■■□□□ 1.46
SYNE1-226ENST00000488376 TRIM41Q8WV44 630 aa24.14■■□□□ 1.45
SYNE1-226ENST00000488376 RIMBP3CA6NJZ7 1639 aa24.13■■□□□ 1.45
SYNE1-226ENST00000488376 RIMBP3BA6NNM3 1639 aa24.13■■□□□ 1.45
SYNE1-226ENST00000488376 RIMBP3Q9UFD9 1639 aa24.13■■□□□ 1.45
SYNE1-226ENST00000488376 ARHGEF11O15085 1522 aa24.12■■□□□ 1.45
SYNE1-226ENST00000488376 ADAMTS12P58397 1594 aa24.11■■□□□ 1.45
SYNE1-226ENST00000488376 CLASP1Q7Z460 1538 aa24.1■■□□□ 1.45
SYNE1-226ENST00000488376 ERICH3Q5RHP9 1530 aa24.07■■□□□ 1.44
SYNE1-226ENST00000488376 GRIN2AQ12879 1464 aa24.04■■□□□ 1.44
SYNE1-226ENST00000488376 FHAD1B1AJZ9 1412 aa24.02■■□□□ 1.44
SYNE1-226ENST00000488376 CEP170Q5SW79 1584 aa23.97■■□□□ 1.43
SYNE1-226ENST00000488376 ARAP1Q96P48 1450 aa23.95■■□□□ 1.42
SYNE1-226ENST00000488376 KIF27Q86VH2 1401 aa23.95■■□□□ 1.42
SYNE1-226ENST00000488376 NUP160Q12769 1436 aa23.94■■□□□ 1.42
SYNE1-226ENST00000488376 IGF1RP08069 1367 aa23.94■■□□□ 1.42
SYNE1-226ENST00000488376 CYB5RLQ6IPT4 315 aa23.91■■□□□ 1.42
SYNE1-226ENST00000488376 RUSC2Q8N2Y8 1516 aa23.84■■□□□ 1.41
SYNE1-226ENST00000488376 ERCC6L2Q5T890 1561 aa23.83■■□□□ 1.41
SYNE1-226ENST00000488376 CUL7Q14999 1698 aa23.79■■□□□ 1.4
SYNE1-226ENST00000488376 SHROOM2Q13796 1616 aa23.77■■□□□ 1.4
SYNE1-226ENST00000488376 CARMIL1Q5VZK9 1371 aa23.77■■□□□ 1.4
Retrieved 100 of 20,778 RNA–protein pairs in 50.5 ms