RNA–Protein interactions for RNA: ENST00000488217.1

TRIM50-203, Transcript of tripartite motif containing 50, humanhuman

TSL 2

Gene TRIM50, Length 548 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM50-203ENST00000488217 NISCHQ9Y2I1 1504 aa38.02■■■■□ 3.68
TRIM50-203ENST00000488217 ABCC9O60706 1549 aa34.09■■■■□ 3.05
TRIM50-203ENST00000488217 CCDC180Q9P1Z9 1646 aa33.86■■■■□ 3.01
TRIM50-203ENST00000488217 DCAF8L2P0C7V8 631 aa32.38■■■□□ 2.77
TRIM50-203ENST00000488217 RB1CC1Q8TDY2 1594 aa32.36■■■□□ 2.77
TRIM50-203ENST00000488217 NACADO15069 1562 aa32.19■■■□□ 2.74
TRIM50-203ENST00000488217 DNAJC5BQ9UF47 199 aa32.15■■■□□ 2.74
TRIM50-203ENST00000488217 PABPN1Q86U42 306 aaKnown RBP eCLIP31.93■■■□□ 2.7
TRIM50-203ENST00000488217 MYO15BQ96JP2 1530 aa31.77■■■□□ 2.68
TRIM50-203ENST00000488217 ZCCHC6Q5VYS8 1495 aaKnown RBP31.45■■■□□ 2.62
TRIM50-203ENST00000488217 BICRAQ9NZM4 1560 aa31.4■■■□□ 2.62
TRIM50-203ENST00000488217 UNC13AQ9UPW8 1703 aa31.39■■■□□ 2.62
TRIM50-203ENST00000488217 DCAF1Q9Y4B6 1507 aa31.37■■■□□ 2.61
TRIM50-203ENST00000488217 SHROOM4Q9ULL8 1493 aa30.99■■■□□ 2.55
TRIM50-203ENST00000488217 SCRIBQ14160 1630 aa30.95■■■□□ 2.55
TRIM50-203ENST00000488217 CECR2Q9BXF3 1484 aa30.72■■■□□ 2.51
TRIM50-203ENST00000488217 CC2D2AQ9P2K1 1620 aa30.69■■■□□ 2.5
TRIM50-203ENST00000488217 EIF4G1Q04637 1599 aaKnown RBP30.65■■■□□ 2.5
TRIM50-203ENST00000488217 NCAPD3P42695 1498 aa29.83■■■□□ 2.37
TRIM50-203ENST00000488217 ATAD2BQ9ULI0 1458 aa29.71■■■□□ 2.35
TRIM50-203ENST00000488217 SMARCA2P51531 1590 aa29.54■■■□□ 2.32
TRIM50-203ENST00000488217 SMARCA4P51532 1647 aa29.53■■■□□ 2.32
TRIM50-203ENST00000488217 DNAJC5Q9H3Z4 198 aa29.5■■■□□ 2.31
TRIM50-203ENST00000488217 BAZ1AQ9NRL2 1556 aaPredicted RBP29.46■■■□□ 2.31
TRIM50-203ENST00000488217 HMGXB3Q12766 1538 aa29.44■■■□□ 2.3
TRIM50-203ENST00000488217 ERCC6Q03468 1493 aa29.42■■■□□ 2.3
TRIM50-203ENST00000488217 BAZ1BQ9UIG0 1483 aaKnown RBP29.38■■■□□ 2.29
TRIM50-203ENST00000488217 CUX2O14529 1486 aa29.32■■■□□ 2.28
TRIM50-203ENST00000488217 MROH2BQ7Z745 1585 aa29.29■■■□□ 2.28
TRIM50-203ENST00000488217 NESP48681 1621 aa29.27■■■□□ 2.28
TRIM50-203ENST00000488217 PEG3Q9GZU2 1588 aa29.27■■■□□ 2.28
TRIM50-203ENST00000488217 LAMC3Q9Y6N6 1575 aa29.01■■■□□ 2.23
TRIM50-203ENST00000488217 PDS5BQ9NTI5 1447 aa29■■■□□ 2.23
TRIM50-203ENST00000488217 CADPSQ9ULU8 1353 aa28.98■■■□□ 2.23
TRIM50-203ENST00000488217 WIZO95785 1651 aa28.84■■■□□ 2.21
TRIM50-203ENST00000488217 RSF1Q96T23 1441 aaPredicted RBP28.79■■■□□ 2.2
TRIM50-203ENST00000488217 THOC2Q8NI27 1593 aaKnown RBP28.79■■■□□ 2.2
TRIM50-203ENST00000488217 KIF21AQ7Z4S6 1674 aa28.68■■■□□ 2.18
TRIM50-203ENST00000488217 MRC2Q9UBG0 1479 aa28.64■■■□□ 2.17
TRIM50-203ENST00000488217 CFTRP13569 1480 aa28.58■■■□□ 2.17
TRIM50-203ENST00000488217 FANCD2Q9BXW9 1451 aa28.54■■■□□ 2.16
TRIM50-203ENST00000488217 CEP164Q9UPV0 1460 aa28.53■■■□□ 2.16
TRIM50-203ENST00000488217 WDR62O43379 1518 aa28.51■■■□□ 2.15
TRIM50-203ENST00000488217 TOP2AP11388 1531 aaKnown RBP28.5■■■□□ 2.15
TRIM50-203ENST00000488217 CCDC88BA6NC98 1476 aa28.33■■■□□ 2.13
TRIM50-203ENST00000488217 URB2Q14146 1524 aaKnown RBP28.27■■■□□ 2.12
TRIM50-203ENST00000488217 OSCARQ8IYS5 282 aa28.24■■■□□ 2.11
TRIM50-203ENST00000488217 TRIM41Q8WV44 630 aa28.2■■■□□ 2.1
TRIM50-203ENST00000488217 IFT140Q96RY7 1462 aa28.01■■■□□ 2.07
TRIM50-203ENST00000488217 ABCC8Q09428 1581 aa27.99■■■□□ 2.07
TRIM50-203ENST00000488217 TOPBP1Q92547 1522 aa27.97■■■□□ 2.07
TRIM50-203ENST00000488217 ZNF608Q9ULD9 1512 aaPredicted RBP27.95■■■□□ 2.06
TRIM50-203ENST00000488217 PRDM2Q13029 1718 aa27.89■■■□□ 2.06
TRIM50-203ENST00000488217 DNMBPQ6XZF7 1577 aa27.81■■■□□ 2.04
TRIM50-203ENST00000488217 AQRO60306 1485 aaKnown RBP eCLIP27.78■■■□□ 2.044e-8■■■■■ 31.9
TRIM50-203ENST00000488217 FBLN2P98095 1184 aa27.71■■■□□ 2.03
TRIM50-203ENST00000488217 SOGA1O94964 1423 aa27.7■■■□□ 2.03
TRIM50-203ENST00000488217 SUPT5HO00267 1087 aaKnown RBP27.7■■■□□ 2.02
TRIM50-203ENST00000488217 POLA1P09884 1462 aaPredicted RBP27.7■■■□□ 2.02
TRIM50-203ENST00000488217 TDRD9Q8NDG6 1382 aaKnown RBP27.66■■■□□ 2.02
TRIM50-203ENST00000488217 RAD54L2Q9Y4B4 1467 aa27.65■■■□□ 2.02
TRIM50-203ENST00000488217 TARBP1Q13395 1621 aaKnown RBP27.64■■■□□ 2.02
TRIM50-203ENST00000488217 EIF4G3O43432 1585 aaKnown RBP27.62■■■□□ 2.01
TRIM50-203ENST00000488217 CYB5RLQ6IPT4 315 aa27.58■■■□□ 2.01
TRIM50-203ENST00000488217 RIMBP3CA6NJZ7 1639 aa27.53■■■□□ 2
TRIM50-203ENST00000488217 RIMBP3BA6NNM3 1639 aa27.53■■■□□ 2
TRIM50-203ENST00000488217 RIMBP3Q9UFD9 1639 aa27.53■■■□□ 2
TRIM50-203ENST00000488217 ARHGEF11O15085 1522 aa27.52■■■□□ 2
TRIM50-203ENST00000488217 FGD5Q6ZNL6 1462 aa27.52■■■□□ 2
TRIM50-203ENST00000488217 CHMP7Q8WUX9 453 aaPredicted RBP27.52■■■□□ 2
TRIM50-203ENST00000488217 CUX1P39880 1505 aa27.49■■□□□ 1.99
TRIM50-203ENST00000488217 SNAPC4Q5SXM2 1469 aa27.38■■□□□ 1.97
TRIM50-203ENST00000488217 GRIN2BQ13224 1484 aa27.37■■□□□ 1.97
TRIM50-203ENST00000488217 CHD1O14646 1710 aa27.34■■□□□ 1.97
TRIM50-203ENST00000488217 WDR97A6NE52 1622 aa27.33■■□□□ 1.97
TRIM50-203ENST00000488217 MAGI1Q96QZ7 1491 aaPredicted RBP27.32■■□□□ 1.96
TRIM50-203ENST00000488217 GAPVD1Q14C86 1478 aa27.29■■□□□ 1.96
TRIM50-203ENST00000488217 ARAP1Q96P48 1450 aa27.26■■□□□ 1.95
TRIM50-203ENST00000488217 TRHP20396 242 aaPredicted RBP27.26■■□□□ 1.95
TRIM50-203ENST00000488217 SYNJ2O15056 1496 aa27.25■■□□□ 1.95
TRIM50-203ENST00000488217 ABCA10Q8WWZ4 1543 aa27.23■■□□□ 1.95
TRIM50-203ENST00000488217 WRNQ14191 1432 aaPredicted RBP eCLIP27.22■■□□□ 1.95
TRIM50-203ENST00000488217 SYNJ1O43426 1573 aa27.17■■□□□ 1.94
TRIM50-203ENST00000488217 CLASP1Q7Z460 1538 aa27.16■■□□□ 1.94
TRIM50-203ENST00000488217 ABCA5Q8WWZ7 1642 aa27.04■■□□□ 1.92
TRIM50-203ENST00000488217 TOP2BQ02880 1626 aa27.01■■□□□ 1.91
TRIM50-203ENST00000488217 PBRM1Q86U86 1689 aa26.98■■□□□ 1.91
TRIM50-203ENST00000488217 GRIN2AQ12879 1464 aa26.98■■□□□ 1.91
TRIM50-203ENST00000488217 FHAD1B1AJZ9 1412 aa26.97■■□□□ 1.91
TRIM50-203ENST00000488217 BIVM-ERCC5R4GMW8 1640 aa26.93■■□□□ 1.9
TRIM50-203ENST00000488217 NUP160Q12769 1436 aa26.91■■□□□ 1.9
TRIM50-203ENST00000488217 ERICH3Q5RHP9 1530 aa26.85■■□□□ 1.89
TRIM50-203ENST00000488217 JPH4Q96JJ6 628 aa26.85■■□□□ 1.89
TRIM50-203ENST00000488217 ADAMTS12P58397 1594 aa26.84■■□□□ 1.89
TRIM50-203ENST00000488217 CEP170Q5SW79 1584 aa26.8■■□□□ 1.88
TRIM50-203ENST00000488217 ERCC6L2Q5T890 1561 aa26.77■■□□□ 1.88
TRIM50-203ENST00000488217 IGF1RP08069 1367 aa26.72■■□□□ 1.87
TRIM50-203ENST00000488217 PRG4Q92954 1404 aaPredicted RBP26.72■■□□□ 1.87
TRIM50-203ENST00000488217 SHROOM2Q13796 1616 aa26.65■■□□□ 1.86
TRIM50-203ENST00000488217 KIF27Q86VH2 1401 aa26.65■■□□□ 1.86
Retrieved 100 of 20,778 RNA–protein pairs in 22.2 ms