RNA–Protein interactions for RNA: ENST00000487984.1

SDC3-204, Transcript of syndecan 3, humanhuman

TSL 3

Gene SDC3, Length 355 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3-204ENST00000487984 NISCHQ9Y2I1 1504 aa30.57■■■□□ 2.49
SDC3-204ENST00000487984 CCDC180Q9P1Z9 1646 aa27.3■■□□□ 1.96
SDC3-204ENST00000487984 ABCC9O60706 1549 aa27.18■■□□□ 1.94
SDC3-204ENST00000487984 RB1CC1Q8TDY2 1594 aa25.92■■□□□ 1.74
SDC3-204ENST00000487984 NACADO15069 1562 aa25.8■■□□□ 1.72
SDC3-204ENST00000487984 DCAF8L2P0C7V8 631 aa25.73■■□□□ 1.71
SDC3-204ENST00000487984 MYO15BQ96JP2 1530 aa25.52■■□□□ 1.68
SDC3-204ENST00000487984 ZCCHC6Q5VYS8 1495 aaKnown RBP25.39■■□□□ 1.65
SDC3-204ENST00000487984 PABPN1Q86U42 306 aaKnown RBP eCLIP25.36■■□□□ 1.65
SDC3-204ENST00000487984 DNAJC5BQ9UF47 199 aa25.36■■□□□ 1.65
SDC3-204ENST00000487984 UNC13AQ9UPW8 1703 aa25.28■■□□□ 1.64
SDC3-204ENST00000487984 DCAF1Q9Y4B6 1507 aa25.26■■□□□ 1.63
SDC3-204ENST00000487984 BICRAQ9NZM4 1560 aa25.18■■□□□ 1.62
SDC3-204ENST00000487984 SCRIBQ14160 1630 aa24.94■■□□□ 1.58
SDC3-204ENST00000487984 SHROOM4Q9ULL8 1493 aa24.86■■□□□ 1.57
SDC3-204ENST00000487984 EIF4G1Q04637 1599 aaKnown RBP24.54■■□□□ 1.52
SDC3-204ENST00000487984 CC2D2AQ9P2K1 1620 aa24.53■■□□□ 1.52
SDC3-204ENST00000487984 CECR2Q9BXF3 1484 aa24.47■■□□□ 1.51
SDC3-204ENST00000487984 NCAPD3P42695 1498 aa23.84■■□□□ 1.41
SDC3-204ENST00000487984 ATAD2BQ9ULI0 1458 aa23.8■■□□□ 1.4
SDC3-204ENST00000487984 SMARCA4P51532 1647 aa23.79■■□□□ 1.4
SDC3-204ENST00000487984 SMARCA2P51531 1590 aa23.72■■□□□ 1.39
SDC3-204ENST00000487984 BAZ1AQ9NRL2 1556 aaPredicted RBP23.71■■□□□ 1.39
SDC3-204ENST00000487984 HMGXB3Q12766 1538 aa23.67■■□□□ 1.38
SDC3-204ENST00000487984 BAZ1BQ9UIG0 1483 aaKnown RBP23.57■■□□□ 1.36
SDC3-204ENST00000487984 MROH2BQ7Z745 1585 aa23.57■■□□□ 1.36
SDC3-204ENST00000487984 PEG3Q9GZU2 1588 aa23.57■■□□□ 1.36
SDC3-204ENST00000487984 ERCC6Q03468 1493 aa23.45■■□□□ 1.34
SDC3-204ENST00000487984 NESP48681 1621 aa23.41■■□□□ 1.34
SDC3-204ENST00000487984 CUX2O14529 1486 aa23.35■■□□□ 1.33
SDC3-204ENST00000487984 WIZO95785 1651 aa23.26■■□□□ 1.31
SDC3-204ENST00000487984 LAMC3Q9Y6N6 1575 aa23.24■■□□□ 1.31
SDC3-204ENST00000487984 RSF1Q96T23 1441 aaPredicted RBP23.16■■□□□ 1.3
SDC3-204ENST00000487984 CADPSQ9ULU8 1353 aa23.14■■□□□ 1.29
SDC3-204ENST00000487984 DNAJC5Q9H3Z4 198 aa23.13■■□□□ 1.29
SDC3-204ENST00000487984 PDS5BQ9NTI5 1447 aa23.13■■□□□ 1.29
SDC3-204ENST00000487984 THOC2Q8NI27 1593 aaKnown RBP23.11■■□□□ 1.29
SDC3-204ENST00000487984 KIF21AQ7Z4S6 1674 aa23.06■■□□□ 1.28
SDC3-204ENST00000487984 TOP2AP11388 1531 aaKnown RBP23.01■■□□□ 1.27
SDC3-204ENST00000487984 MRC2Q9UBG0 1479 aa22.92■■□□□ 1.26
SDC3-204ENST00000487984 CFTRP13569 1480 aa22.91■■□□□ 1.26
SDC3-204ENST00000487984 FANCD2Q9BXW9 1451 aa22.86■■□□□ 1.25
SDC3-204ENST00000487984 CEP164Q9UPV0 1460 aa22.86■■□□□ 1.25
SDC3-204ENST00000487984 WDR62O43379 1518 aa22.85■■□□□ 1.25
SDC3-204ENST00000487984 CCDC88BA6NC98 1476 aa22.75■■□□□ 1.23
SDC3-204ENST00000487984 URB2Q14146 1524 aaKnown RBP22.67■■□□□ 1.22
SDC3-204ENST00000487984 PRDM2Q13029 1718 aa22.59■■□□□ 1.21
SDC3-204ENST00000487984 TOPBP1Q92547 1522 aa22.45■■□□□ 1.18
SDC3-204ENST00000487984 IFT140Q96RY7 1462 aa22.41■■□□□ 1.18
SDC3-204ENST00000487984 ABCC8Q09428 1581 aa22.38■■□□□ 1.17
SDC3-204ENST00000487984 DNMBPQ6XZF7 1577 aa22.37■■□□□ 1.17
SDC3-204ENST00000487984 ZNF608Q9ULD9 1512 aaPredicted RBP22.36■■□□□ 1.17
SDC3-204ENST00000487984 OSCARQ8IYS5 282 aa22.32■■□□□ 1.16
SDC3-204ENST00000487984 SUPT5HO00267 1087 aaKnown RBP22.27■■□□□ 1.16
SDC3-204ENST00000487984 POLA1P09884 1462 aaPredicted RBP22.23■■□□□ 1.15
SDC3-204ENST00000487984 EIF4G3O43432 1585 aaKnown RBP22.21■■□□□ 1.15
SDC3-204ENST00000487984 TARBP1Q13395 1621 aaKnown RBP22.21■■□□□ 1.15
SDC3-204ENST00000487984 TRIM41Q8WV44 630 aa22.2■■□□□ 1.14
SDC3-204ENST00000487984 AQRO60306 1485 aaKnown RBP eCLIP22.18■■□□□ 1.14
SDC3-204ENST00000487984 RAD54L2Q9Y4B4 1467 aa22.15■■□□□ 1.14
SDC3-204ENST00000487984 SOGA1O94964 1423 aa22.14■■□□□ 1.13
SDC3-204ENST00000487984 CUX1P39880 1505 aa22.13■■□□□ 1.13
SDC3-204ENST00000487984 FGD5Q6ZNL6 1462 aa22.12■■□□□ 1.13
SDC3-204ENST00000487984 TDRD9Q8NDG6 1382 aaKnown RBP22.08■■□□□ 1.12
SDC3-204ENST00000487984 FBLN2P98095 1184 aa21.99■■□□□ 1.11
SDC3-204ENST00000487984 WDR97A6NE52 1622 aa21.98■■□□□ 1.11
SDC3-204ENST00000487984 CHD1O14646 1710 aa21.98■■□□□ 1.11
SDC3-204ENST00000487984 RIMBP3CA6NJZ7 1639 aa21.98■■□□□ 1.11
SDC3-204ENST00000487984 RIMBP3BA6NNM3 1639 aa21.98■■□□□ 1.11
SDC3-204ENST00000487984 RIMBP3Q9UFD9 1639 aa21.98■■□□□ 1.11
SDC3-204ENST00000487984 SNAPC4Q5SXM2 1469 aa21.96■■□□□ 1.11
SDC3-204ENST00000487984 ARHGEF11O15085 1522 aa21.96■■□□□ 1.11
SDC3-204ENST00000487984 GRIN2BQ13224 1484 aa21.92■■□□□ 1.1
SDC3-204ENST00000487984 MAGI1Q96QZ7 1491 aaPredicted RBP21.9■■□□□ 1.1
SDC3-204ENST00000487984 ABCA10Q8WWZ4 1543 aa21.88■■□□□ 1.09
SDC3-204ENST00000487984 GAPVD1Q14C86 1478 aa21.86■■□□□ 1.09
SDC3-204ENST00000487984 CHMP7Q8WUX9 453 aaPredicted RBP21.86■■□□□ 1.09
SDC3-204ENST00000487984 WRNQ14191 1432 aaPredicted RBP eCLIP21.83■■□□□ 1.09
SDC3-204ENST00000487984 SYNJ2O15056 1496 aa21.83■■□□□ 1.08
SDC3-204ENST00000487984 ABCA5Q8WWZ7 1642 aa21.81■■□□□ 1.08
SDC3-204ENST00000487984 TOP2BQ02880 1626 aa21.8■■□□□ 1.08
SDC3-204ENST00000487984 SYNJ1O43426 1573 aa21.79■■□□□ 1.08
SDC3-204ENST00000487984 CYB5RLQ6IPT4 315 aa21.79■■□□□ 1.08
SDC3-204ENST00000487984 BIVM-ERCC5R4GMW8 1640 aa21.79■■□□□ 1.08
SDC3-204ENST00000487984 PBRM1Q86U86 1689 aa21.79■■□□□ 1.08
SDC3-204ENST00000487984 CLASP1Q7Z460 1538 aa21.78■■□□□ 1.08
SDC3-204ENST00000487984 ARAP1Q96P48 1450 aa21.77■■□□□ 1.07
SDC3-204ENST00000487984 ADAMTS12P58397 1594 aa21.64■■□□□ 1.05
SDC3-204ENST00000487984 GRIN2AQ12879 1464 aa21.64■■□□□ 1.05
SDC3-204ENST00000487984 FHAD1B1AJZ9 1412 aa21.6■■□□□ 1.05
SDC3-204ENST00000487984 ERICH3Q5RHP9 1530 aa21.6■■□□□ 1.05
SDC3-204ENST00000487984 NUP160Q12769 1436 aa21.57■■□□□ 1.04
SDC3-204ENST00000487984 CEP170Q5SW79 1584 aa21.55■■□□□ 1.04
SDC3-204ENST00000487984 TRHP20396 242 aaPredicted RBP21.47■■□□□ 1.03
SDC3-204ENST00000487984 ERCC6L2Q5T890 1561 aa21.47■■□□□ 1.03
SDC3-204ENST00000487984 SHROOM2Q13796 1616 aa21.42■■□□□ 1.02
SDC3-204ENST00000487984 KIF27Q86VH2 1401 aa21.4■■□□□ 1.02
SDC3-204ENST00000487984 IGF1RP08069 1367 aa21.39■■□□□ 1.02
SDC3-204ENST00000487984 PRG4Q92954 1404 aaPredicted RBP21.35■■□□□ 1.01
SDC3-204ENST00000487984 JPH4Q96JJ6 628 aa21.34■■□□□ 1.01
Retrieved 100 of 20,778 RNA–protein pairs in 37.3 ms