RNA–Protein interactions for RNA: ENST00000487899.1

RAB11FIP3-210, Transcript of RAB11 family interacting protein 3, humanhuman

TSL 3

Gene RAB11FIP3, Length 669 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RAB11FIP3-210ENST00000487899 NISCHQ9Y2I1 1504 aa28.28■■■□□ 2.12
RAB11FIP3-210ENST00000487899 CCDC180Q9P1Z9 1646 aa25.47■■□□□ 1.67
RAB11FIP3-210ENST00000487899 ABCC9O60706 1549 aa25.02■■□□□ 1.6
RAB11FIP3-210ENST00000487899 RB1CC1Q8TDY2 1594 aa23.99■■□□□ 1.43
RAB11FIP3-210ENST00000487899 NACADO15069 1562 aa23.87■■□□□ 1.41
RAB11FIP3-210ENST00000487899 UNC13AQ9UPW8 1703 aa23.7■■□□□ 1.38
RAB11FIP3-210ENST00000487899 MYO15BQ96JP2 1530 aa23.64■■□□□ 1.37
RAB11FIP3-210ENST00000487899 ZCCHC6Q5VYS8 1495 aaKnown RBP23.55■■□□□ 1.36
RAB11FIP3-210ENST00000487899 DCAF1Q9Y4B6 1507 aa23.42■■□□□ 1.34
RAB11FIP3-210ENST00000487899 DCAF8L2P0C7V8 631 aa23.41■■□□□ 1.34
RAB11FIP3-210ENST00000487899 BICRAQ9NZM4 1560 aa23.37■■□□□ 1.33
RAB11FIP3-210ENST00000487899 DNAJC5BQ9UF47 199 aa23.34■■□□□ 1.33
RAB11FIP3-210ENST00000487899 PABPN1Q86U42 306 aaKnown RBP eCLIP23.18■■□□□ 1.3
RAB11FIP3-210ENST00000487899 SCRIBQ14160 1630 aa23.12■■□□□ 1.29
RAB11FIP3-210ENST00000487899 SHROOM4Q9ULL8 1493 aa23.04■■□□□ 1.28
RAB11FIP3-210ENST00000487899 EIF4G1Q04637 1599 aaKnown RBP22.73■■□□□ 1.23
RAB11FIP3-210ENST00000487899 CC2D2AQ9P2K1 1620 aa22.72■■□□□ 1.23
RAB11FIP3-210ENST00000487899 CECR2Q9BXF3 1484 aa22.51■■□□□ 1.19
RAB11FIP3-210ENST00000487899 SMARCA4P51532 1647 aa22.1■■□□□ 1.13
RAB11FIP3-210ENST00000487899 NCAPD3P42695 1498 aa21.96■■□□□ 1.11
RAB11FIP3-210ENST00000487899 BAZ1AQ9NRL2 1556 aaPredicted RBP21.96■■□□□ 1.11
RAB11FIP3-210ENST00000487899 ATAD2BQ9ULI0 1458 aa21.96■■□□□ 1.11
RAB11FIP3-210ENST00000487899 HMGXB3Q12766 1538 aa21.96■■□□□ 1.11
RAB11FIP3-210ENST00000487899 SMARCA2P51531 1590 aa21.94■■□□□ 1.1
RAB11FIP3-210ENST00000487899 PEG3Q9GZU2 1588 aa21.91■■□□□ 1.1
RAB11FIP3-210ENST00000487899 MROH2BQ7Z745 1585 aa21.8■■□□□ 1.08
RAB11FIP3-210ENST00000487899 BAZ1BQ9UIG0 1483 aaKnown RBP21.76■■□□□ 1.07
RAB11FIP3-210ENST00000487899 WIZO95785 1651 aa21.62■■□□□ 1.05
RAB11FIP3-210ENST00000487899 NESP48681 1621 aa21.6■■□□□ 1.05
RAB11FIP3-210ENST00000487899 DNAJC5Q9H3Z4 198 aa21.59■■□□□ 1.05
RAB11FIP3-210ENST00000487899 ERCC6Q03468 1493 aa21.55■■□□□ 1.04
RAB11FIP3-210ENST00000487899 LAMC3Q9Y6N6 1575 aa21.54■■□□□ 1.04
RAB11FIP3-210ENST00000487899 CUX2O14529 1486 aa21.52■■□□□ 1.03
RAB11FIP3-210ENST00000487899 KIF21AQ7Z4S6 1674 aa21.5■■□□□ 1.03
RAB11FIP3-210ENST00000487899 THOC2Q8NI27 1593 aaKnown RBP21.5■■□□□ 1.03
RAB11FIP3-210ENST00000487899 RSF1Q96T23 1441 aaPredicted RBP21.36■■□□□ 1.01
RAB11FIP3-210ENST00000487899 TOP2AP11388 1531 aaKnown RBP21.34■■□□□ 1.01
RAB11FIP3-210ENST00000487899 PDS5BQ9NTI5 1447 aa21.25■□□□□ 0.99
RAB11FIP3-210ENST00000487899 CADPSQ9ULU8 1353 aa21.24■□□□□ 0.99
RAB11FIP3-210ENST00000487899 PRDM2Q13029 1718 aa21.24■□□□□ 0.99
RAB11FIP3-210ENST00000487899 WDR62O43379 1518 aa21.17■□□□□ 0.98
RAB11FIP3-210ENST00000487899 MRC2Q9UBG0 1479 aa21.15■□□□□ 0.98
RAB11FIP3-210ENST00000487899 CFTRP13569 1480 aa21.13■□□□□ 0.97
RAB11FIP3-210ENST00000487899 CEP164Q9UPV0 1460 aa21.1■□□□□ 0.97
RAB11FIP3-210ENST00000487899 FANCD2Q9BXW9 1451 aa21.08■□□□□ 0.97
RAB11FIP3-210ENST00000487899 CCDC88BA6NC98 1476 aa20.99■□□□□ 0.95
RAB11FIP3-210ENST00000487899 URB2Q14146 1524 aaKnown RBP20.95■□□□□ 0.94
RAB11FIP3-210ENST00000487899 TOPBP1Q92547 1522 aa20.74■□□□□ 0.91
RAB11FIP3-210ENST00000487899 DNMBPQ6XZF7 1577 aa20.73■□□□□ 0.91
RAB11FIP3-210ENST00000487899 EIF4G3O43432 1585 aaKnown RBP20.66■□□□□ 0.9
RAB11FIP3-210ENST00000487899 IFT140Q96RY7 1462 aa20.64■□□□□ 0.89
RAB11FIP3-210ENST00000487899 TARBP1Q13395 1621 aaKnown RBP20.64■□□□□ 0.89
RAB11FIP3-210ENST00000487899 ABCC8Q09428 1581 aa20.63■□□□□ 0.89
RAB11FIP3-210ENST00000487899 ZNF608Q9ULD9 1512 aaPredicted RBP20.63■□□□□ 0.89
RAB11FIP3-210ENST00000487899 POLA1P09884 1462 aaPredicted RBP20.54■□□□□ 0.88
RAB11FIP3-210ENST00000487899 CHD1O14646 1710 aa20.5■□□□□ 0.87
RAB11FIP3-210ENST00000487899 WDR97A6NE52 1622 aa20.5■□□□□ 0.87
RAB11FIP3-210ENST00000487899 CUX1P39880 1505 aa20.49■□□□□ 0.87
RAB11FIP3-210ENST00000487899 FGD5Q6ZNL6 1462 aa20.44■□□□□ 0.86
RAB11FIP3-210ENST00000487899 TRIM41Q8WV44 630 aa20.41■□□□□ 0.86
RAB11FIP3-210ENST00000487899 RAD54L2Q9Y4B4 1467 aa20.41■□□□□ 0.86
RAB11FIP3-210ENST00000487899 AQRO60306 1485 aaKnown RBP eCLIP20.38■□□□□ 0.85
RAB11FIP3-210ENST00000487899 PBRM1Q86U86 1689 aa20.37■□□□□ 0.85
RAB11FIP3-210ENST00000487899 RIMBP3CA6NJZ7 1639 aa20.37■□□□□ 0.85
RAB11FIP3-210ENST00000487899 RIMBP3BA6NNM3 1639 aa20.37■□□□□ 0.85
RAB11FIP3-210ENST00000487899 RIMBP3Q9UFD9 1639 aa20.37■□□□□ 0.85
RAB11FIP3-210ENST00000487899 SUPT5HO00267 1087 aaKnown RBP20.35■□□□□ 0.85
RAB11FIP3-210ENST00000487899 OSCARQ8IYS5 282 aa20.33■□□□□ 0.85
RAB11FIP3-210ENST00000487899 BIVM-ERCC5R4GMW8 1640 aa20.32■□□□□ 0.84
RAB11FIP3-210ENST00000487899 SOGA1O94964 1423 aa20.32■□□□□ 0.84
RAB11FIP3-210ENST00000487899 ABCA5Q8WWZ7 1642 aa20.31■□□□□ 0.84
RAB11FIP3-210ENST00000487899 ARHGEF11O15085 1522 aa20.27■□□□□ 0.83
RAB11FIP3-210ENST00000487899 SYNJ1O43426 1573 aa20.26■□□□□ 0.83
RAB11FIP3-210ENST00000487899 SNAPC4Q5SXM2 1469 aa20.26■□□□□ 0.83
RAB11FIP3-210ENST00000487899 TOP2BQ02880 1626 aa20.26■□□□□ 0.83
RAB11FIP3-210ENST00000487899 TDRD9Q8NDG6 1382 aaKnown RBP20.25■□□□□ 0.83
RAB11FIP3-210ENST00000487899 MAGI1Q96QZ7 1491 aaPredicted RBP20.23■□□□□ 0.83
RAB11FIP3-210ENST00000487899 ABCA10Q8WWZ4 1543 aa20.22■□□□□ 0.83
RAB11FIP3-210ENST00000487899 CLASP1Q7Z460 1538 aa20.21■□□□□ 0.83
RAB11FIP3-210ENST00000487899 GRIN2BQ13224 1484 aa20.19■□□□□ 0.82
RAB11FIP3-210ENST00000487899 GAPVD1Q14C86 1478 aa20.15■□□□□ 0.82
RAB11FIP3-210ENST00000487899 SYNJ2O15056 1496 aa20.13■□□□□ 0.81
RAB11FIP3-210ENST00000487899 WRNQ14191 1432 aaPredicted RBP eCLIP20.13■□□□□ 0.81
RAB11FIP3-210ENST00000487899 ADAMTS12P58397 1594 aa20.12■□□□□ 0.81
RAB11FIP3-210ENST00000487899 ARAP1Q96P48 1450 aa20.09■□□□□ 0.81
RAB11FIP3-210ENST00000487899 FBLN2P98095 1184 aa20.04■□□□□ 0.8
RAB11FIP3-210ENST00000487899 GRIN2AQ12879 1464 aa19.99■□□□□ 0.79
RAB11FIP3-210ENST00000487899 ERICH3Q5RHP9 1530 aa19.99■□□□□ 0.79
RAB11FIP3-210ENST00000487899 CEP170Q5SW79 1584 aa19.99■□□□□ 0.79
RAB11FIP3-210ENST00000487899 CHMP7Q8WUX9 453 aaPredicted RBP19.94■□□□□ 0.78
RAB11FIP3-210ENST00000487899 SHROOM2Q13796 1616 aa19.93■□□□□ 0.78
RAB11FIP3-210ENST00000487899 NUP160Q12769 1436 aa19.91■□□□□ 0.78
RAB11FIP3-210ENST00000487899 ERCC6L2Q5T890 1561 aa19.88■□□□□ 0.77
RAB11FIP3-210ENST00000487899 FHAD1B1AJZ9 1412 aa19.88■□□□□ 0.77
RAB11FIP3-210ENST00000487899 RUSC2Q8N2Y8 1516 aa19.86■□□□□ 0.77
RAB11FIP3-210ENST00000487899 CYB5RLQ6IPT4 315 aa19.84■□□□□ 0.77
RAB11FIP3-210ENST00000487899 CUL7Q14999 1698 aa19.82■□□□□ 0.76
RAB11FIP3-210ENST00000487899 KIF27Q86VH2 1401 aa19.69■□□□□ 0.74
RAB11FIP3-210ENST00000487899 IGF1RP08069 1367 aa19.63■□□□□ 0.73
RAB11FIP3-210ENST00000487899 PRG4Q92954 1404 aaPredicted RBP19.6■□□□□ 0.73
Retrieved 100 of 20,778 RNA–protein pairs in 8.5 ms