RNA–Protein interactions for RNA: ENST00000487876.1

RPSA-208, Transcript of ribosomal protein SA, humanhuman

TSL 4

Gene RPSA, Length 572 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RPSA-208ENST00000487876 NISCHQ9Y2I1 1504 aa31.81■■■□□ 2.68
RPSA-208ENST00000487876 CCDC180Q9P1Z9 1646 aa28.4■■■□□ 2.14
RPSA-208ENST00000487876 ABCC9O60706 1549 aa27.94■■■□□ 2.06
RPSA-208ENST00000487876 RB1CC1Q8TDY2 1594 aa26.77■■□□□ 1.88
RPSA-208ENST00000487876 NACADO15069 1562 aa26.67■■□□□ 1.86
RPSA-208ENST00000487876 DCAF8L2P0C7V8 631 aa26.59■■□□□ 1.85
RPSA-208ENST00000487876 ZCCHC6Q5VYS8 1495 aaKnown RBP26.48■■□□□ 1.83
RPSA-208ENST00000487876 MYO15BQ96JP2 1530 aa26.43■■□□□ 1.82
RPSA-208ENST00000487876 UNC13AQ9UPW8 1703 aa26.31■■□□□ 1.8
RPSA-208ENST00000487876 DCAF1Q9Y4B6 1507 aa26.27■■□□□ 1.8
RPSA-208ENST00000487876 AEBP2Q6ZN18 517 aaPredicted RBP26.17■■□□□ 1.78
RPSA-208ENST00000487876 PABPN1Q86U42 306 aaKnown RBP eCLIP26.04■■□□□ 1.76
RPSA-208ENST00000487876 BICRAQ9NZM4 1560 aa26.03■■□□□ 1.76
RPSA-208ENST00000487876 SCRIBQ14160 1630 aa25.93■■□□□ 1.74
RPSA-208ENST00000487876 DNAJC5BQ9UF47 199 aa25.78■■□□□ 1.72
RPSA-208ENST00000487876 SHROOM4Q9ULL8 1493 aa25.62■■□□□ 1.69
RPSA-208ENST00000487876 EIF4G1Q04637 1599 aaKnown RBP25.33■■□□□ 1.65
RPSA-208ENST00000487876 CC2D2AQ9P2K1 1620 aa25.28■■□□□ 1.64
RPSA-208ENST00000487876 CECR2Q9BXF3 1484 aa25.09■■□□□ 1.61
RPSA-208ENST00000487876 CHIC1Q5VXU3 224 aa25.09■■□□□ 1.61
RPSA-208ENST00000487876 SMARCA4P51532 1647 aa24.76■■□□□ 1.55
RPSA-208ENST00000487876 BAZ1AQ9NRL2 1556 aaPredicted RBP24.65■■□□□ 1.54
RPSA-208ENST00000487876 ATAD2BQ9ULI0 1458 aa24.62■■□□□ 1.53
RPSA-208ENST00000487876 NCAPD3P42695 1498 aa24.6■■□□□ 1.53
RPSA-208ENST00000487876 SMARCA2P51531 1590 aa24.57■■□□□ 1.52
RPSA-208ENST00000487876 MROH2BQ7Z745 1585 aa24.54■■□□□ 1.52
RPSA-208ENST00000487876 HMGXB3Q12766 1538 aa24.51■■□□□ 1.51
RPSA-208ENST00000487876 PEG3Q9GZU2 1588 aa24.49■■□□□ 1.51
RPSA-208ENST00000487876 BAZ1BQ9UIG0 1483 aaKnown RBP24.41■■□□□ 1.5
RPSA-208ENST00000487876 WIZO95785 1651 aa24.31■■□□□ 1.48
RPSA-208ENST00000487876 NESP48681 1621 aa24.16■■□□□ 1.46
RPSA-208ENST00000487876 RSF1Q96T23 1441 aaPredicted RBP24.16■■□□□ 1.46
RPSA-208ENST00000487876 ERCC6Q03468 1493 aa24.06■■□□□ 1.44
RPSA-208ENST00000487876 LAMC3Q9Y6N6 1575 aa24.01■■□□□ 1.43
RPSA-208ENST00000487876 TOP2AP11388 1531 aaKnown RBP24■■□□□ 1.43
RPSA-208ENST00000487876 KIF21AQ7Z4S6 1674 aa23.92■■□□□ 1.42
RPSA-208ENST00000487876 CADPSQ9ULU8 1353 aa23.86■■□□□ 1.41
RPSA-208ENST00000487876 CUX2O14529 1486 aa23.85■■□□□ 1.41
RPSA-208ENST00000487876 THOC2Q8NI27 1593 aaKnown RBP23.85■■□□□ 1.41
RPSA-208ENST00000487876 PDS5BQ9NTI5 1447 aa23.8■■□□□ 1.4
RPSA-208ENST00000487876 CFTRP13569 1480 aa23.71■■□□□ 1.39
RPSA-208ENST00000487876 CCDC88BA6NC98 1476 aa23.69■■□□□ 1.38
RPSA-208ENST00000487876 PRDM2Q13029 1718 aa23.64■■□□□ 1.38
RPSA-208ENST00000487876 FANCD2Q9BXW9 1451 aa23.63■■□□□ 1.37
RPSA-208ENST00000487876 MRC2Q9UBG0 1479 aa23.62■■□□□ 1.37
RPSA-208ENST00000487876 CEP164Q9UPV0 1460 aa23.62■■□□□ 1.37
RPSA-208ENST00000487876 WDR62O43379 1518 aa23.58■■□□□ 1.36
RPSA-208ENST00000487876 URB2Q14146 1524 aaKnown RBP23.44■■□□□ 1.34
RPSA-208ENST00000487876 SUPT5HO00267 1087 aaKnown RBP23.4■■□□□ 1.34
RPSA-208ENST00000487876 DNAJC5Q9H3Z4 198 aa23.28■■□□□ 1.32
RPSA-208ENST00000487876 TOPBP1Q92547 1522 aa23.25■■□□□ 1.31
RPSA-208ENST00000487876 DNMBPQ6XZF7 1577 aa23.22■■□□□ 1.31
RPSA-208ENST00000487876 ABCC8Q09428 1581 aa23.15■■□□□ 1.3
RPSA-208ENST00000487876 IFT140Q96RY7 1462 aa23.11■■□□□ 1.29
RPSA-208ENST00000487876 ZNF608Q9ULD9 1512 aaPredicted RBP23.08■■□□□ 1.29
RPSA-208ENST00000487876 TARBP1Q13395 1621 aaKnown RBP23.05■■□□□ 1.28
RPSA-208ENST00000487876 POLA1P09884 1462 aaPredicted RBP23.05■■□□□ 1.28
RPSA-208ENST00000487876 CUX1P39880 1505 aa23.04■■□□□ 1.28
RPSA-208ENST00000487876 EIF4G3O43432 1585 aaKnown RBP23.01■■□□□ 1.27
RPSA-208ENST00000487876 FGD5Q6ZNL6 1462 aa22.97■■□□□ 1.27
RPSA-208ENST00000487876 RAD54L2Q9Y4B4 1467 aa22.96■■□□□ 1.27
RPSA-208ENST00000487876 AQRO60306 1485 aaKnown RBP eCLIP22.9■■□□□ 1.265e-8■■■■■ 47
RPSA-208ENST00000487876 SOGA1O94964 1423 aa22.9■■□□□ 1.26
RPSA-208ENST00000487876 WDR97A6NE52 1622 aa22.86■■□□□ 1.25
RPSA-208ENST00000487876 TDRD9Q8NDG6 1382 aaKnown RBP22.82■■□□□ 1.24
RPSA-208ENST00000487876 SYNJ1O43426 1573 aa22.81■■□□□ 1.24
RPSA-208ENST00000487876 BIVM-ERCC5R4GMW8 1640 aa22.81■■□□□ 1.24
RPSA-208ENST00000487876 CHD1O14646 1710 aa22.79■■□□□ 1.24
RPSA-208ENST00000487876 TOP2BQ02880 1626 aa22.79■■□□□ 1.24
RPSA-208ENST00000487876 WRNQ14191 1432 aaPredicted RBP eCLIP22.77■■□□□ 1.247e-10■■■■■ 33.4
RPSA-208ENST00000487876 OSCARQ8IYS5 282 aa22.77■■□□□ 1.24
RPSA-208ENST00000487876 PBRM1Q86U86 1689 aa22.72■■□□□ 1.23
RPSA-208ENST00000487876 ABCA10Q8WWZ4 1543 aa22.71■■□□□ 1.23
RPSA-208ENST00000487876 SNAPC4Q5SXM2 1469 aa22.7■■□□□ 1.22
RPSA-208ENST00000487876 ABCA5Q8WWZ7 1642 aa22.7■■□□□ 1.22
RPSA-208ENST00000487876 GRIN2BQ13224 1484 aa22.66■■□□□ 1.22
RPSA-208ENST00000487876 GAPVD1Q14C86 1478 aa22.65■■□□□ 1.22
RPSA-208ENST00000487876 MAGI1Q96QZ7 1491 aaPredicted RBP22.62■■□□□ 1.21
RPSA-208ENST00000487876 FBLN2P98095 1184 aa22.61■■□□□ 1.21
RPSA-208ENST00000487876 RIMBP3CA6NJZ7 1639 aa22.57■■□□□ 1.2
RPSA-208ENST00000487876 RIMBP3BA6NNM3 1639 aa22.57■■□□□ 1.2
RPSA-208ENST00000487876 RIMBP3Q9UFD9 1639 aa22.57■■□□□ 1.2
RPSA-208ENST00000487876 SYNJ2O15056 1496 aa22.54■■□□□ 1.2
RPSA-208ENST00000487876 ARHGEF11O15085 1522 aa22.51■■□□□ 1.19
RPSA-208ENST00000487876 ADAMTS12P58397 1594 aa22.5■■□□□ 1.19
RPSA-208ENST00000487876 CHMP7Q8WUX9 453 aaPredicted RBP22.49■■□□□ 1.19
RPSA-208ENST00000487876 TRIM41Q8WV44 630 aa22.49■■□□□ 1.19
RPSA-208ENST00000487876 CLASP1Q7Z460 1538 aa22.48■■□□□ 1.19
RPSA-208ENST00000487876 ERICH3Q5RHP9 1530 aa22.43■■□□□ 1.18
RPSA-208ENST00000487876 SENP3Q9H4L4 574 aaPredicted RBP22.41■■□□□ 1.18
RPSA-208ENST00000487876 GRIN2AQ12879 1464 aa22.4■■□□□ 1.18
RPSA-208ENST00000487876 FHAD1B1AJZ9 1412 aa22.36■■□□□ 1.17
RPSA-208ENST00000487876 CEP170Q5SW79 1584 aa22.35■■□□□ 1.17
RPSA-208ENST00000487876 ARAP1Q96P48 1450 aa22.33■■□□□ 1.16
RPSA-208ENST00000487876 NUP160Q12769 1436 aa22.29■■□□□ 1.16
RPSA-208ENST00000487876 KIF27Q86VH2 1401 aa22.28■■□□□ 1.16
RPSA-208ENST00000487876 CYB5RLQ6IPT4 315 aa22.24■■□□□ 1.15
RPSA-208ENST00000487876 CUL7Q14999 1698 aa22.23■■□□□ 1.15
RPSA-208ENST00000487876 IGF1RP08069 1367 aa22.22■■□□□ 1.15
RPSA-208ENST00000487876 ERCC6L2Q5T890 1561 aa22.21■■□□□ 1.15
Retrieved 100 of 20,778 RNA–protein pairs in 25.7 ms