RNA–Protein interactions for RNA: ENST00000487721.1

SFXN3-206, Transcript of sideroflexin 3, humanhuman

TSL 3

Gene SFXN3, Length 761 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SFXN3-206ENST00000487721 NISCHQ9Y2I1 1504 aa29.35■■■□□ 2.29
SFXN3-206ENST00000487721 ABCC9O60706 1549 aa26.35■■□□□ 1.81
SFXN3-206ENST00000487721 CCDC180Q9P1Z9 1646 aa26.09■■□□□ 1.77
SFXN3-206ENST00000487721 RB1CC1Q8TDY2 1594 aa24.97■■□□□ 1.59
SFXN3-206ENST00000487721 DNAJC5BQ9UF47 199 aa24.92■■□□□ 1.58
SFXN3-206ENST00000487721 DCAF8L2P0C7V8 631 aa24.86■■□□□ 1.57
SFXN3-206ENST00000487721 NACADO15069 1562 aa24.79■■□□□ 1.56
SFXN3-206ENST00000487721 PABPN1Q86U42 306 aaKnown RBP eCLIP24.62■■□□□ 1.53
SFXN3-206ENST00000487721 ZCCHC6Q5VYS8 1495 aaKnown RBP24.42■■□□□ 1.5
SFXN3-206ENST00000487721 MYO15BQ96JP2 1530 aa24.41■■□□□ 1.5
SFXN3-206ENST00000487721 UNC13AQ9UPW8 1703 aa24.29■■□□□ 1.48
SFXN3-206ENST00000487721 DCAF1Q9Y4B6 1507 aa24.29■■□□□ 1.48
SFXN3-206ENST00000487721 BICRAQ9NZM4 1560 aa24.24■■□□□ 1.47
SFXN3-206ENST00000487721 SHROOM4Q9ULL8 1493 aa23.88■■□□□ 1.41
SFXN3-206ENST00000487721 SCRIBQ14160 1630 aa23.84■■□□□ 1.41
SFXN3-206ENST00000487721 CECR2Q9BXF3 1484 aa23.75■■□□□ 1.39
SFXN3-206ENST00000487721 CC2D2AQ9P2K1 1620 aa23.74■■□□□ 1.39
SFXN3-206ENST00000487721 EIF4G1Q04637 1599 aaKnown RBP23.66■■□□□ 1.38
SFXN3-206ENST00000487721 DNAJC5Q9H3Z4 198 aa22.96■■□□□ 1.27
SFXN3-206ENST00000487721 NCAPD3P42695 1498 aa22.95■■□□□ 1.26
SFXN3-206ENST00000487721 ATAD2BQ9ULI0 1458 aa22.85■■□□□ 1.25
SFXN3-206ENST00000487721 BAZ1AQ9NRL2 1556 aaPredicted RBP22.77■■□□□ 1.24
SFXN3-206ENST00000487721 ERCC6Q03468 1493 aa22.76■■□□□ 1.23
SFXN3-206ENST00000487721 SMARCA2P51531 1590 aa22.73■■□□□ 1.23
SFXN3-206ENST00000487721 SMARCA4P51532 1647 aa22.73■■□□□ 1.23
SFXN3-206ENST00000487721 CUX2O14529 1486 aa22.73■■□□□ 1.23
SFXN3-206ENST00000487721 HMGXB3Q12766 1538 aa22.67■■□□□ 1.22
SFXN3-206ENST00000487721 BAZ1BQ9UIG0 1483 aaKnown RBP22.6■■□□□ 1.21
SFXN3-206ENST00000487721 NESP48681 1621 aa22.6■■□□□ 1.21
SFXN3-206ENST00000487721 MROH2BQ7Z745 1585 aa22.59■■□□□ 1.21
SFXN3-206ENST00000487721 PEG3Q9GZU2 1588 aa22.51■■□□□ 1.19
SFXN3-206ENST00000487721 RSF1Q96T23 1441 aaPredicted RBP22.38■■□□□ 1.17
SFXN3-206ENST00000487721 LAMC3Q9Y6N6 1575 aa22.37■■□□□ 1.17
SFXN3-206ENST00000487721 AEBP2Q6ZN18 517 aaPredicted RBP22.35■■□□□ 1.17
SFXN3-206ENST00000487721 PDS5BQ9NTI5 1447 aa22.33■■□□□ 1.17
SFXN3-206ENST00000487721 WIZO95785 1651 aa22.29■■□□□ 1.16
SFXN3-206ENST00000487721 THOC2Q8NI27 1593 aaKnown RBP22.29■■□□□ 1.16
SFXN3-206ENST00000487721 CADPSQ9ULU8 1353 aa22.27■■□□□ 1.16
SFXN3-206ENST00000487721 KIF21AQ7Z4S6 1674 aa22.18■■□□□ 1.14
SFXN3-206ENST00000487721 TOP2AP11388 1531 aaKnown RBP22.12■■□□□ 1.13
SFXN3-206ENST00000487721 MRC2Q9UBG0 1479 aa22.09■■□□□ 1.13
SFXN3-206ENST00000487721 WDR62O43379 1518 aa22.01■■□□□ 1.11
SFXN3-206ENST00000487721 CEP164Q9UPV0 1460 aa21.98■■□□□ 1.11
SFXN3-206ENST00000487721 FANCD2Q9BXW9 1451 aa21.97■■□□□ 1.11
SFXN3-206ENST00000487721 CFTRP13569 1480 aa21.96■■□□□ 1.11
SFXN3-206ENST00000487721 TRIM41Q8WV44 630 aa21.91■■□□□ 1.1
SFXN3-206ENST00000487721 SUPT5HO00267 1087 aaKnown RBP21.9■■□□□ 1.1
SFXN3-206ENST00000487721 CCDC88BA6NC98 1476 aa21.9■■□□□ 1.1
SFXN3-206ENST00000487721 OSCARQ8IYS5 282 aa21.81■■□□□ 1.08
SFXN3-206ENST00000487721 URB2Q14146 1524 aaKnown RBP21.78■■□□□ 1.08
SFXN3-206ENST00000487721 IFT140Q96RY7 1462 aa21.57■■□□□ 1.04
SFXN3-206ENST00000487721 ZNF608Q9ULD9 1512 aaPredicted RBP21.55■■□□□ 1.04
SFXN3-206ENST00000487721 TOPBP1Q92547 1522 aa21.53■■□□□ 1.04
SFXN3-206ENST00000487721 PRDM2Q13029 1718 aa21.52■■□□□ 1.04
SFXN3-206ENST00000487721 ABCC8Q09428 1581 aa21.5■■□□□ 1.03
SFXN3-206ENST00000487721 DNMBPQ6XZF7 1577 aa21.4■■□□□ 1.02
SFXN3-206ENST00000487721 AQRO60306 1485 aaKnown RBP eCLIP21.39■■□□□ 1.01
SFXN3-206ENST00000487721 RIMBP3CA6NJZ7 1639 aa21.36■■□□□ 1.01
SFXN3-206ENST00000487721 RIMBP3BA6NNM3 1639 aa21.36■■□□□ 1.01
SFXN3-206ENST00000487721 RIMBP3Q9UFD9 1639 aa21.36■■□□□ 1.01
SFXN3-206ENST00000487721 FBLN2P98095 1184 aa21.34■■□□□ 1.01
SFXN3-206ENST00000487721 EIF4G3O43432 1585 aaKnown RBP21.32■■□□□ 1
SFXN3-206ENST00000487721 ARHGEF11O15085 1522 aa21.31■■□□□ 1
SFXN3-206ENST00000487721 CYB5RLQ6IPT4 315 aa21.31■■□□□ 1
SFXN3-206ENST00000487721 POLA1P09884 1462 aaPredicted RBP21.3■■□□□ 1
SFXN3-206ENST00000487721 TARBP1Q13395 1621 aaKnown RBP21.29■■□□□ 1
SFXN3-206ENST00000487721 SOGA1O94964 1423 aa21.28■■□□□ 1
SFXN3-206ENST00000487721 RAD54L2Q9Y4B4 1467 aa21.26■□□□□ 0.99
SFXN3-206ENST00000487721 TDRD9Q8NDG6 1382 aaKnown RBP21.26■□□□□ 0.99
SFXN3-206ENST00000487721 CUX1P39880 1505 aa21.19■□□□□ 0.98
SFXN3-206ENST00000487721 CHD1O14646 1710 aa21.16■□□□□ 0.98
SFXN3-206ENST00000487721 FGD5Q6ZNL6 1462 aa21.16■□□□□ 0.98
SFXN3-206ENST00000487721 CHMP7Q8WUX9 453 aaPredicted RBP21.16■□□□□ 0.98
SFXN3-206ENST00000487721 WRNQ14191 1432 aaPredicted RBP eCLIP21.13■□□□□ 0.97
SFXN3-206ENST00000487721 TRHP20396 242 aaPredicted RBP21.11■□□□□ 0.97
SFXN3-206ENST00000487721 SNAPC4Q5SXM2 1469 aa21.1■□□□□ 0.97
SFXN3-206ENST00000487721 ARAP1Q96P48 1450 aa21.1■□□□□ 0.97
SFXN3-206ENST00000487721 GRIN2BQ13224 1484 aa21.05■□□□□ 0.96
SFXN3-206ENST00000487721 WDR97A6NE52 1622 aa21.04■□□□□ 0.96
SFXN3-206ENST00000487721 MAGI1Q96QZ7 1491 aaPredicted RBP21.04■□□□□ 0.96
SFXN3-206ENST00000487721 CHIC1Q5VXU3 224 aa21■□□□□ 0.95
SFXN3-206ENST00000487721 TOP2BQ02880 1626 aa21■□□□□ 0.95
SFXN3-206ENST00000487721 SYNJ2O15056 1496 aa20.99■□□□□ 0.95
SFXN3-206ENST00000487721 GAPVD1Q14C86 1478 aa20.98■□□□□ 0.95
SFXN3-206ENST00000487721 CLASP1Q7Z460 1538 aa20.97■□□□□ 0.95
SFXN3-206ENST00000487721 ABCA10Q8WWZ4 1543 aa20.97■□□□□ 0.95
SFXN3-206ENST00000487721 SYNJ1O43426 1573 aa20.97■□□□□ 0.95
SFXN3-206ENST00000487721 BIVM-ERCC5R4GMW8 1640 aa20.95■□□□□ 0.94
SFXN3-206ENST00000487721 PBRM1Q86U86 1689 aa20.83■□□□□ 0.92
SFXN3-206ENST00000487721 ABCA5Q8WWZ7 1642 aa20.82■□□□□ 0.92
SFXN3-206ENST00000487721 GRIN2AQ12879 1464 aa20.76■□□□□ 0.91
SFXN3-206ENST00000487721 KIF27Q86VH2 1401 aa20.74■□□□□ 0.91
SFXN3-206ENST00000487721 ERICH3Q5RHP9 1530 aa20.72■□□□□ 0.91
SFXN3-206ENST00000487721 FHAD1B1AJZ9 1412 aa20.71■□□□□ 0.91
SFXN3-206ENST00000487721 NUP160Q12769 1436 aa20.7■□□□□ 0.9
SFXN3-206ENST00000487721 ADAMTS12P58397 1594 aa20.67■□□□□ 0.9
SFXN3-206ENST00000487721 ERCC6L2Q5T890 1561 aa20.67■□□□□ 0.9
SFXN3-206ENST00000487721 CEP170Q5SW79 1584 aa20.66■□□□□ 0.9
SFXN3-206ENST00000487721 IGF1RP08069 1367 aa20.63■□□□□ 0.89
SFXN3-206ENST00000487721 JPH4Q96JJ6 628 aa20.62■□□□□ 0.89
Retrieved 100 of 20,778 RNA–protein pairs in 61.5 ms