RNA–Protein interactions for RNA: ENST00000487485.1

TOP3B-216, Transcript of DNA topoisomerase III beta, humanhuman

TSL 3

Gene TOP3B, Length 725 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TOP3B-216ENST00000487485 NISCHQ9Y2I1 1504 aa25.62■■□□□ 1.69
TOP3B-216ENST00000487485 ABCC9O60706 1549 aa23.51■■□□□ 1.35
TOP3B-216ENST00000487485 CCDC180Q9P1Z9 1646 aa23.04■■□□□ 1.28
TOP3B-216ENST00000487485 DNAJC5BQ9UF47 199 aa22.47■■□□□ 1.19
TOP3B-216ENST00000487485 RB1CC1Q8TDY2 1594 aa22.14■■□□□ 1.13
TOP3B-216ENST00000487485 PABPN1Q86U42 306 aaKnown RBP eCLIP21.92■■□□□ 1.1
TOP3B-216ENST00000487485 NACADO15069 1562 aa21.91■■□□□ 1.1
TOP3B-216ENST00000487485 DCAF8L2P0C7V8 631 aa21.91■■□□□ 1.1
TOP3B-216ENST00000487485 UNC13AQ9UPW8 1703 aa21.65■■□□□ 1.06
TOP3B-216ENST00000487485 BICRAQ9NZM4 1560 aa21.56■■□□□ 1.04
TOP3B-216ENST00000487485 MYO15BQ96JP2 1530 aa21.49■■□□□ 1.03
TOP3B-216ENST00000487485 ZCCHC6Q5VYS8 1495 aaKnown RBP21.21■□□□□ 0.99
TOP3B-216ENST00000487485 CECR2Q9BXF3 1484 aa21.2■□□□□ 0.98
TOP3B-216ENST00000487485 CC2D2AQ9P2K1 1620 aa21.18■□□□□ 0.98
TOP3B-216ENST00000487485 SHROOM4Q9ULL8 1493 aa21.13■□□□□ 0.97
TOP3B-216ENST00000487485 DCAF1Q9Y4B6 1507 aa21.09■□□□□ 0.97
TOP3B-216ENST00000487485 SCRIBQ14160 1630 aa21.06■□□□□ 0.96
TOP3B-216ENST00000487485 EIF4G1Q04637 1599 aaKnown RBP21.04■□□□□ 0.96
TOP3B-216ENST00000487485 DNAJC5Q9H3Z4 198 aa20.83■□□□□ 0.93
TOP3B-216ENST00000487485 CUX2O14529 1486 aa20.33■□□□□ 0.85
TOP3B-216ENST00000487485 ERCC6Q03468 1493 aa20.29■□□□□ 0.84
TOP3B-216ENST00000487485 NCAPD3P42695 1498 aa20.28■□□□□ 0.84
TOP3B-216ENST00000487485 ATAD2BQ9ULI0 1458 aa20.18■□□□□ 0.82
TOP3B-216ENST00000487485 NESP48681 1621 aa20.11■□□□□ 0.81
TOP3B-216ENST00000487485 SMARCA2P51531 1590 aa20.04■□□□□ 0.8
TOP3B-216ENST00000487485 HMGXB3Q12766 1538 aa20.03■□□□□ 0.8
TOP3B-216ENST00000487485 SMARCA4P51532 1647 aa20.03■□□□□ 0.8
TOP3B-216ENST00000487485 BAZ1BQ9UIG0 1483 aaKnown RBP19.94■□□□□ 0.78
TOP3B-216ENST00000487485 THOC2Q8NI27 1593 aaKnown RBP19.88■□□□□ 0.77
TOP3B-216ENST00000487485 BAZ1AQ9NRL2 1556 aaPredicted RBP19.87■□□□□ 0.77
TOP3B-216ENST00000487485 PEG3Q9GZU2 1588 aa19.82■□□□□ 0.76
TOP3B-216ENST00000487485 LAMC3Q9Y6N6 1575 aa19.82■□□□□ 0.76
TOP3B-216ENST00000487485 TRIM41Q8WV44 630 aa19.78■□□□□ 0.76
TOP3B-216ENST00000487485 PDS5BQ9NTI5 1447 aa19.77■□□□□ 0.76
TOP3B-216ENST00000487485 MROH2BQ7Z745 1585 aa19.77■□□□□ 0.76
TOP3B-216ENST00000487485 KIF21AQ7Z4S6 1674 aa19.76■□□□□ 0.75
TOP3B-216ENST00000487485 CADPSQ9ULU8 1353 aa19.68■□□□□ 0.74
TOP3B-216ENST00000487485 MRC2Q9UBG0 1479 aa19.6■□□□□ 0.73
TOP3B-216ENST00000487485 WDR62O43379 1518 aa19.55■□□□□ 0.72
TOP3B-216ENST00000487485 WIZO95785 1651 aa19.49■□□□□ 0.71
TOP3B-216ENST00000487485 RSF1Q96T23 1441 aaPredicted RBP19.46■□□□□ 0.71
TOP3B-216ENST00000487485 OSCARQ8IYS5 282 aa19.45■□□□□ 0.7
TOP3B-216ENST00000487485 CEP164Q9UPV0 1460 aa19.45■□□□□ 0.7
TOP3B-216ENST00000487485 FANCD2Q9BXW9 1451 aa19.43■□□□□ 0.7
TOP3B-216ENST00000487485 CFTRP13569 1480 aa19.35■□□□□ 0.69
TOP3B-216ENST00000487485 URB2Q14146 1524 aaKnown RBP19.3■□□□□ 0.68
TOP3B-216ENST00000487485 TOP2AP11388 1531 aaKnown RBP19.2■□□□□ 0.66
TOP3B-216ENST00000487485 SUPT5HO00267 1087 aaKnown RBP19.19■□□□□ 0.66
TOP3B-216ENST00000487485 RIMBP3CA6NJZ7 1639 aa19.16■□□□□ 0.66
TOP3B-216ENST00000487485 RIMBP3BA6NNM3 1639 aa19.16■□□□□ 0.66
TOP3B-216ENST00000487485 RIMBP3Q9UFD9 1639 aa19.16■□□□□ 0.66
TOP3B-216ENST00000487485 ZNF608Q9ULD9 1512 aaPredicted RBP19.15■□□□□ 0.66
TOP3B-216ENST00000487485 IFT140Q96RY7 1462 aa19.09■□□□□ 0.65
TOP3B-216ENST00000487485 ARHGEF11O15085 1522 aa19.07■□□□□ 0.64
TOP3B-216ENST00000487485 CYB5RLQ6IPT4 315 aa19.05■□□□□ 0.64
TOP3B-216ENST00000487485 CCDC88BA6NC98 1476 aa19.04■□□□□ 0.64
TOP3B-216ENST00000487485 PRDM2Q13029 1718 aa19.03■□□□□ 0.64
TOP3B-216ENST00000487485 TOPBP1Q92547 1522 aa19.02■□□□□ 0.64
TOP3B-216ENST00000487485 AQRO60306 1485 aaKnown RBP eCLIP18.94■□□□□ 0.624e-6■■■■■ 31
TOP3B-216ENST00000487485 TRHP20396 242 aaPredicted RBP18.93■□□□□ 0.62
TOP3B-216ENST00000487485 EIF4G3O43432 1585 aaKnown RBP18.93■□□□□ 0.62
TOP3B-216ENST00000487485 FBLN2P98095 1184 aa18.92■□□□□ 0.62
TOP3B-216ENST00000487485 ABCC8Q09428 1581 aa18.92■□□□□ 0.62
TOP3B-216ENST00000487485 ARAP1Q96P48 1450 aa18.88■□□□□ 0.61
TOP3B-216ENST00000487485 DNMBPQ6XZF7 1577 aa18.88■□□□□ 0.61
TOP3B-216ENST00000487485 CHD1O14646 1710 aa18.87■□□□□ 0.61
TOP3B-216ENST00000487485 TARBP1Q13395 1621 aaKnown RBP18.85■□□□□ 0.61
TOP3B-216ENST00000487485 POLA1P09884 1462 aaPredicted RBP18.8■□□□□ 0.6
TOP3B-216ENST00000487485 RAD54L2Q9Y4B4 1467 aa18.79■□□□□ 0.6
TOP3B-216ENST00000487485 TDRD9Q8NDG6 1382 aaKnown RBP18.79■□□□□ 0.6
TOP3B-216ENST00000487485 SOGA1O94964 1423 aa18.74■□□□□ 0.59
TOP3B-216ENST00000487485 CHMP7Q8WUX9 453 aaPredicted RBP18.7■□□□□ 0.58
TOP3B-216ENST00000487485 SNAPC4Q5SXM2 1469 aa18.69■□□□□ 0.58
TOP3B-216ENST00000487485 CLASP1Q7Z460 1538 aa18.65■□□□□ 0.58
TOP3B-216ENST00000487485 FGD5Q6ZNL6 1462 aa18.64■□□□□ 0.57
TOP3B-216ENST00000487485 AEBP2Q6ZN18 517 aaPredicted RBP18.61■□□□□ 0.57
TOP3B-216ENST00000487485 SYNJ1O43426 1573 aa18.59■□□□□ 0.57
TOP3B-216ENST00000487485 MAGI1Q96QZ7 1491 aaPredicted RBP18.59■□□□□ 0.57
TOP3B-216ENST00000487485 GRIN2BQ13224 1484 aa18.58■□□□□ 0.57
TOP3B-216ENST00000487485 CUX1P39880 1505 aa18.57■□□□□ 0.56
TOP3B-216ENST00000487485 WDR97A6NE52 1622 aa18.56■□□□□ 0.56
TOP3B-216ENST00000487485 SYNJ2O15056 1496 aa18.55■□□□□ 0.56
TOP3B-216ENST00000487485 GAPVD1Q14C86 1478 aa18.51■□□□□ 0.55
TOP3B-216ENST00000487485 PBRM1Q86U86 1689 aa18.43■□□□□ 0.54
TOP3B-216ENST00000487485 ABCA10Q8WWZ4 1543 aa18.39■□□□□ 0.54
TOP3B-216ENST00000487485 ERCC6L2Q5T890 1561 aa18.39■□□□□ 0.53
TOP3B-216ENST00000487485 ABCA5Q8WWZ7 1642 aa18.36■□□□□ 0.53
TOP3B-216ENST00000487485 WRNQ14191 1432 aaPredicted RBP eCLIP18.34■□□□□ 0.53
TOP3B-216ENST00000487485 GRIN2AQ12879 1464 aa18.33■□□□□ 0.53
TOP3B-216ENST00000487485 NUP160Q12769 1436 aa18.3■□□□□ 0.52
TOP3B-216ENST00000487485 BIVM-ERCC5R4GMW8 1640 aa18.3■□□□□ 0.52
TOP3B-216ENST00000487485 CEP170Q5SW79 1584 aa18.3■□□□□ 0.52
TOP3B-216ENST00000487485 TOP2BQ02880 1626 aa18.29■□□□□ 0.52
TOP3B-216ENST00000487485 ADAMTS12P58397 1594 aa18.25■□□□□ 0.51
TOP3B-216ENST00000487485 FHAD1B1AJZ9 1412 aa18.23■□□□□ 0.51
TOP3B-216ENST00000487485 SHROOM2Q13796 1616 aa18.21■□□□□ 0.51
TOP3B-216ENST00000487485 JPH4Q96JJ6 628 aa18.19■□□□□ 0.5
TOP3B-216ENST00000487485 PRG4Q92954 1404 aaPredicted RBP18.18■□□□□ 0.5
TOP3B-216ENST00000487485 KIF13AQ9H1H9 1805 aa18.18■□□□□ 0.5
TOP3B-216ENST00000487485 FAM69CQ0P6D2 419 aa18.15■□□□□ 0.5
Retrieved 100 of 20,778 RNA–protein pairs in 40.1 ms