RNA–Protein interactions for RNA: ENST00000487481.1

NME1-208, Transcript of NME/NM23 nucleoside diphosphate kinase 1, humanhuman

TSL 2

Gene NME1, Length 987 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NME1-208ENST00000487481 NISCHQ9Y2I1 1504 aa39.11■■■■□ 3.85
NME1-208ENST00000487481 ABCC9O60706 1549 aa35.9■■■■□ 3.34
NME1-208ENST00000487481 CCDC180Q9P1Z9 1646 aa35.43■■■■□ 3.26
NME1-208ENST00000487481 DNAJC5BQ9UF47 199 aa34.14■■■■□ 3.06
NME1-208ENST00000487481 RB1CC1Q8TDY2 1594 aa33.98■■■■□ 3.03
NME1-208ENST00000487481 NACADO15069 1562 aa33.61■■■□□ 2.97
NME1-208ENST00000487481 PABPN1Q86U42 306 aaKnown RBP eCLIP33.27■■■□□ 2.92
NME1-208ENST00000487481 UNC13AQ9UPW8 1703 aa33.21■■■□□ 2.91
NME1-208ENST00000487481 DCAF8L2P0C7V8 631 aa33.13■■■□□ 2.89
NME1-208ENST00000487481 BICRAQ9NZM4 1560 aa32.99■■■□□ 2.87
NME1-208ENST00000487481 MYO15BQ96JP2 1530 aa32.97■■■□□ 2.87
NME1-208ENST00000487481 SHROOM4Q9ULL8 1493 aa32.57■■■□□ 2.8
NME1-208ENST00000487481 CC2D2AQ9P2K1 1620 aa32.44■■■□□ 2.78
NME1-208ENST00000487481 CECR2Q9BXF3 1484 aa32.43■■■□□ 2.78
NME1-208ENST00000487481 DCAF1Q9Y4B6 1507 aa32.32■■■□□ 2.76
NME1-208ENST00000487481 ZCCHC6Q5VYS8 1495 aaKnown RBP32.31■■■□□ 2.76
NME1-208ENST00000487481 EIF4G1Q04637 1599 aaKnown RBP32.24■■■□□ 2.75
NME1-208ENST00000487481 SCRIBQ14160 1630 aa32.17■■■□□ 2.74
NME1-208ENST00000487481 DNAJC5Q9H3Z4 198 aa31.84■■■□□ 2.69
NME1-208ENST00000487481 CUX2O14529 1486 aa31.27■■■□□ 2.6
NME1-208ENST00000487481 ERCC6Q03468 1493 aa31.08■■■□□ 2.57
NME1-208ENST00000487481 NCAPD3P42695 1498 aa31.01■■■□□ 2.55
NME1-208ENST00000487481 ATAD2BQ9ULI0 1458 aa30.82■■■□□ 2.52
NME1-208ENST00000487481 HMGXB3Q12766 1538 aa30.76■■■□□ 2.51
NME1-208ENST00000487481 SMARCA2P51531 1590 aa30.74■■■□□ 2.51
NME1-208ENST00000487481 NESP48681 1621 aa30.66■■■□□ 2.5
NME1-208ENST00000487481 SMARCA4P51532 1647 aa30.65■■■□□ 2.5
NME1-208ENST00000487481 THOC2Q8NI27 1593 aaKnown RBP30.55■■■□□ 2.48
NME1-208ENST00000487481 BAZ1BQ9UIG0 1483 aaKnown RBP30.5■■■□□ 2.47
NME1-208ENST00000487481 LAMC3Q9Y6N6 1575 aa30.43■■■□□ 2.46
NME1-208ENST00000487481 BAZ1AQ9NRL2 1556 aaPredicted RBP30.42■■■□□ 2.46
NME1-208ENST00000487481 PEG3Q9GZU2 1588 aa30.39■■■□□ 2.46
NME1-208ENST00000487481 KIF21AQ7Z4S6 1674 aa30.3■■■□□ 2.44
NME1-208ENST00000487481 PDS5BQ9NTI5 1447 aa30.25■■■□□ 2.43
NME1-208ENST00000487481 TRIM41Q8WV44 630 aa30.16■■■□□ 2.42
NME1-208ENST00000487481 MROH2BQ7Z745 1585 aa30.11■■■□□ 2.41
NME1-208ENST00000487481 MRC2Q9UBG0 1479 aa30.03■■■□□ 2.4
NME1-208ENST00000487481 CADPSQ9ULU8 1353 aa30.02■■■□□ 2.4
NME1-208ENST00000487481 WDR62O43379 1518 aa30■■■□□ 2.39
NME1-208ENST00000487481 CEP164Q9UPV0 1460 aa29.8■■■□□ 2.36
NME1-208ENST00000487481 WIZO95785 1651 aa29.72■■■□□ 2.35
NME1-208ENST00000487481 FANCD2Q9BXW9 1451 aa29.68■■■□□ 2.34
NME1-208ENST00000487481 OSCARQ8IYS5 282 aa29.65■■■□□ 2.34
NME1-208ENST00000487481 CFTRP13569 1480 aa29.57■■■□□ 2.32
NME1-208ENST00000487481 URB2Q14146 1524 aaKnown RBP29.47■■■□□ 2.31
NME1-208ENST00000487481 RIMBP3CA6NJZ7 1639 aa29.38■■■□□ 2.29
NME1-208ENST00000487481 RIMBP3BA6NNM3 1639 aa29.38■■■□□ 2.29
NME1-208ENST00000487481 RIMBP3Q9UFD9 1639 aa29.38■■■□□ 2.29
NME1-208ENST00000487481 TOP2AP11388 1531 aaKnown RBP29.35■■■□□ 2.29
NME1-208ENST00000487481 PRDM2Q13029 1718 aa29.29■■■□□ 2.28
NME1-208ENST00000487481 RSF1Q96T23 1441 aaPredicted RBP29.26■■■□□ 2.27
NME1-208ENST00000487481 ARHGEF11O15085 1522 aa29.24■■■□□ 2.27
NME1-208ENST00000487481 IFT140Q96RY7 1462 aa29.22■■■□□ 2.27
NME1-208ENST00000487481 ZNF608Q9ULD9 1512 aaPredicted RBP29.19■■■□□ 2.26
NME1-208ENST00000487481 TOPBP1Q92547 1522 aa29.06■■■□□ 2.24
NME1-208ENST00000487481 EIF4G3O43432 1585 aaKnown RBP29.05■■■□□ 2.24
NME1-208ENST00000487481 ABCC8Q09428 1581 aa28.99■■■□□ 2.23
NME1-208ENST00000487481 CYB5RLQ6IPT4 315 aa28.97■■■□□ 2.23
NME1-208ENST00000487481 CCDC88BA6NC98 1476 aa28.97■■■□□ 2.23
NME1-208ENST00000487481 CHD1O14646 1710 aa28.94■■■□□ 2.22
NME1-208ENST00000487481 DNMBPQ6XZF7 1577 aa28.92■■■□□ 2.22
NME1-208ENST00000487481 ARAP1Q96P48 1450 aa28.91■■■□□ 2.22
NME1-208ENST00000487481 TARBP1Q13395 1621 aaKnown RBP28.87■■■□□ 2.21
NME1-208ENST00000487481 TRHP20396 242 aaPredicted RBP28.84■■■□□ 2.21
NME1-208ENST00000487481 AQRO60306 1485 aaKnown RBP eCLIP28.83■■■□□ 2.212e-8■■■□□ 18.9
NME1-208ENST00000487481 POLA1P09884 1462 aaPredicted RBP28.73■■■□□ 2.19
NME1-208ENST00000487481 FBLN2P98095 1184 aa28.73■■■□□ 2.19
NME1-208ENST00000487481 CLASP1Q7Z460 1538 aa28.61■■■□□ 2.17
NME1-208ENST00000487481 WDR97A6NE52 1622 aa28.59■■■□□ 2.17
NME1-208ENST00000487481 RAD54L2Q9Y4B4 1467 aa28.59■■■□□ 2.17
NME1-208ENST00000487481 SNAPC4Q5SXM2 1469 aa28.57■■■□□ 2.16
NME1-208ENST00000487481 SOGA1O94964 1423 aa28.55■■■□□ 2.16
NME1-208ENST00000487481 TDRD9Q8NDG6 1382 aaKnown RBP28.55■■■□□ 2.16
NME1-208ENST00000487481 SYNJ1O43426 1573 aa28.54■■■□□ 2.16
NME1-208ENST00000487481 MAGI1Q96QZ7 1491 aaPredicted RBP28.5■■■□□ 2.15
NME1-208ENST00000487481 AEBP2Q6ZN18 517 aaPredicted RBP28.46■■■□□ 2.15
NME1-208ENST00000487481 CHMP7Q8WUX9 453 aaPredicted RBP28.45■■■□□ 2.14
NME1-208ENST00000487481 FGD5Q6ZNL6 1462 aa28.45■■■□□ 2.14
NME1-208ENST00000487481 GRIN2BQ13224 1484 aa28.41■■■□□ 2.14
NME1-208ENST00000487481 SYNJ2O15056 1496 aa28.4■■■□□ 2.14
NME1-208ENST00000487481 CUX1P39880 1505 aa28.33■■■□□ 2.13
NME1-208ENST00000487481 GAPVD1Q14C86 1478 aa28.31■■■□□ 2.12
NME1-208ENST00000487481 PBRM1Q86U86 1689 aa28.29■■■□□ 2.12
NME1-208ENST00000487481 ABCA5Q8WWZ7 1642 aa28.15■■■□□ 2.1
NME1-208ENST00000487481 ABCA10Q8WWZ4 1543 aa28.12■■■□□ 2.09
NME1-208ENST00000487481 ERCC6L2Q5T890 1561 aa28.07■■■□□ 2.08
NME1-208ENST00000487481 GRIN2AQ12879 1464 aa28.05■■■□□ 2.08
NME1-208ENST00000487481 CEP170Q5SW79 1584 aa28■■■□□ 2.07
NME1-208ENST00000487481 NUP160Q12769 1436 aa27.99■■■□□ 2.07
NME1-208ENST00000487481 ADAMTS12P58397 1594 aa27.98■■■□□ 2.07
NME1-208ENST00000487481 SHROOM2Q13796 1616 aa27.95■■■□□ 2.06
NME1-208ENST00000487481 KIF13AQ9H1H9 1805 aa27.9■■■□□ 2.06
NME1-208ENST00000487481 WRNQ14191 1432 aaPredicted RBP eCLIP27.87■■■□□ 2.05
NME1-208ENST00000487481 FHAD1B1AJZ9 1412 aa27.84■■■□□ 2.05
NME1-208ENST00000487481 ERICH3Q5RHP9 1530 aa27.77■■■□□ 2.04
NME1-208ENST00000487481 BIVM-ERCC5R4GMW8 1640 aa27.76■■■□□ 2.03
NME1-208ENST00000487481 TOP2BQ02880 1626 aa27.74■■■□□ 2.03
NME1-208ENST00000487481 PRG4Q92954 1404 aaPredicted RBP27.72■■■□□ 2.03
NME1-208ENST00000487481 ABCC10Q5T3U5 1492 aa27.67■■■□□ 2.02
NME1-208ENST00000487481 MAPKBP1O60336 1514 aa27.64■■■□□ 2.02
Retrieved 100 of 20,778 RNA–protein pairs in 26.8 ms