RNA–Protein interactions for RNA: ENST00000487461.1

VPS16-208, Transcript of VPS16, CORVET/HOPS core subunit, humanhuman

TSL 5

Gene VPS16, Length 634 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS16-208ENST00000487461 NISCHQ9Y2I1 1504 aa30.42■■■□□ 2.46
VPS16-208ENST00000487461 ABCC9O60706 1549 aa27.23■■□□□ 1.95
VPS16-208ENST00000487461 CCDC180Q9P1Z9 1646 aa27.16■■□□□ 1.94
VPS16-208ENST00000487461 RB1CC1Q8TDY2 1594 aa25.87■■□□□ 1.73
VPS16-208ENST00000487461 DCAF8L2P0C7V8 631 aa25.77■■□□□ 1.72
VPS16-208ENST00000487461 NACADO15069 1562 aa25.73■■□□□ 1.71
VPS16-208ENST00000487461 DNAJC5BQ9UF47 199 aa25.6■■□□□ 1.69
VPS16-208ENST00000487461 PABPN1Q86U42 306 aaKnown RBP eCLIP25.44■■□□□ 1.666e-7■■□□□ 12.8
VPS16-208ENST00000487461 MYO15BQ96JP2 1530 aa25.4■■□□□ 1.66
VPS16-208ENST00000487461 UNC13AQ9UPW8 1703 aa25.25■■□□□ 1.63
VPS16-208ENST00000487461 ZCCHC6Q5VYS8 1495 aaKnown RBP25.21■■□□□ 1.63
VPS16-208ENST00000487461 BICRAQ9NZM4 1560 aa25.16■■□□□ 1.62
VPS16-208ENST00000487461 DCAF1Q9Y4B6 1507 aa25.1■■□□□ 1.61
VPS16-208ENST00000487461 SCRIBQ14160 1630 aa24.82■■□□□ 1.56
VPS16-208ENST00000487461 SHROOM4Q9ULL8 1493 aa24.77■■□□□ 1.56
VPS16-208ENST00000487461 CC2D2AQ9P2K1 1620 aa24.56■■□□□ 1.52
VPS16-208ENST00000487461 CECR2Q9BXF3 1484 aa24.51■■□□□ 1.51
VPS16-208ENST00000487461 EIF4G1Q04637 1599 aaKnown RBP24.51■■□□□ 1.51
VPS16-208ENST00000487461 NCAPD3P42695 1498 aa23.81■■□□□ 1.4
VPS16-208ENST00000487461 ATAD2BQ9ULI0 1458 aa23.75■■□□□ 1.39
VPS16-208ENST00000487461 DNAJC5Q9H3Z4 198 aa23.68■■□□□ 1.38
VPS16-208ENST00000487461 SMARCA4P51532 1647 aa23.67■■□□□ 1.38
VPS16-208ENST00000487461 SMARCA2P51531 1590 aa23.63■■□□□ 1.37
VPS16-208ENST00000487461 BAZ1AQ9NRL2 1556 aaPredicted RBP23.57■■□□□ 1.36
VPS16-208ENST00000487461 HMGXB3Q12766 1538 aa23.56■■□□□ 1.36
VPS16-208ENST00000487461 BAZ1BQ9UIG0 1483 aaKnown RBP23.49■■□□□ 1.35
VPS16-208ENST00000487461 ERCC6Q03468 1493 aa23.48■■□□□ 1.35
VPS16-208ENST00000487461 MROH2BQ7Z745 1585 aa23.46■■□□□ 1.35
VPS16-208ENST00000487461 PEG3Q9GZU2 1588 aa23.44■■□□□ 1.34
VPS16-208ENST00000487461 NESP48681 1621 aa23.42■■□□□ 1.34
VPS16-208ENST00000487461 CUX2O14529 1486 aa23.39■■□□□ 1.34
VPS16-208ENST00000487461 LAMC3Q9Y6N6 1575 aa23.18■■□□□ 1.3
VPS16-208ENST00000487461 WIZO95785 1651 aa23.15■■□□□ 1.3
VPS16-208ENST00000487461 PDS5BQ9NTI5 1447 aa23.11■■□□□ 1.29
VPS16-208ENST00000487461 CADPSQ9ULU8 1353 aa23.11■■□□□ 1.29
VPS16-208ENST00000487461 THOC2Q8NI27 1593 aaKnown RBP23.08■■□□□ 1.29
VPS16-208ENST00000487461 RSF1Q96T23 1441 aaPredicted RBP23.03■■□□□ 1.28
VPS16-208ENST00000487461 KIF21AQ7Z4S6 1674 aa23.03■■□□□ 1.28
VPS16-208ENST00000487461 MRC2Q9UBG0 1479 aa22.89■■□□□ 1.25
VPS16-208ENST00000487461 TOP2AP11388 1531 aaKnown RBP22.85■■□□□ 1.25
VPS16-208ENST00000487461 CFTRP13569 1480 aa22.83■■□□□ 1.25
VPS16-208ENST00000487461 FANCD2Q9BXW9 1451 aa22.81■■□□□ 1.24
VPS16-208ENST00000487461 WDR62O43379 1518 aa22.81■■□□□ 1.24
VPS16-208ENST00000487461 CEP164Q9UPV0 1460 aa22.8■■□□□ 1.24
VPS16-208ENST00000487461 CCDC88BA6NC98 1476 aa22.66■■□□□ 1.22
VPS16-208ENST00000487461 URB2Q14146 1524 aaKnown RBP22.62■■□□□ 1.21
VPS16-208ENST00000487461 PRDM2Q13029 1718 aa22.46■■□□□ 1.19
VPS16-208ENST00000487461 OSCARQ8IYS5 282 aa22.44■■□□□ 1.18
VPS16-208ENST00000487461 TRIM41Q8WV44 630 aa22.41■■□□□ 1.18
VPS16-208ENST00000487461 TOPBP1Q92547 1522 aa22.38■■□□□ 1.17
VPS16-208ENST00000487461 IFT140Q96RY7 1462 aa22.37■■□□□ 1.17
VPS16-208ENST00000487461 ZNF608Q9ULD9 1512 aaPredicted RBP22.35■■□□□ 1.17
VPS16-208ENST00000487461 ABCC8Q09428 1581 aa22.32■■□□□ 1.16
VPS16-208ENST00000487461 DNMBPQ6XZF7 1577 aa22.27■■□□□ 1.16
VPS16-208ENST00000487461 AQRO60306 1485 aaKnown RBP eCLIP22.18■■□□□ 1.14
VPS16-208ENST00000487461 POLA1P09884 1462 aaPredicted RBP22.15■■□□□ 1.14
VPS16-208ENST00000487461 TARBP1Q13395 1621 aaKnown RBP22.15■■□□□ 1.14
VPS16-208ENST00000487461 EIF4G3O43432 1585 aaKnown RBP22.14■■□□□ 1.13
VPS16-208ENST00000487461 SUPT5HO00267 1087 aaKnown RBP22.12■■□□□ 1.13
VPS16-208ENST00000487461 RAD54L2Q9Y4B4 1467 aa22.11■■□□□ 1.13
VPS16-208ENST00000487461 SOGA1O94964 1423 aa22.11■■□□□ 1.13
VPS16-208ENST00000487461 TDRD9Q8NDG6 1382 aaKnown RBP22.07■■□□□ 1.12
VPS16-208ENST00000487461 FBLN2P98095 1184 aa22.05■■□□□ 1.12
VPS16-208ENST00000487461 RIMBP3CA6NJZ7 1639 aa22.03■■□□□ 1.12
VPS16-208ENST00000487461 RIMBP3BA6NNM3 1639 aa22.03■■□□□ 1.12
VPS16-208ENST00000487461 RIMBP3Q9UFD9 1639 aa22.03■■□□□ 1.12
VPS16-208ENST00000487461 FGD5Q6ZNL6 1462 aa22.03■■□□□ 1.12
VPS16-208ENST00000487461 CUX1P39880 1505 aa22.02■■□□□ 1.12
VPS16-208ENST00000487461 ARHGEF11O15085 1522 aa21.99■■□□□ 1.11
VPS16-208ENST00000487461 CHD1O14646 1710 aa21.95■■□□□ 1.1
VPS16-208ENST00000487461 CYB5RLQ6IPT4 315 aa21.93■■□□□ 1.1
VPS16-208ENST00000487461 SNAPC4Q5SXM2 1469 aa21.9■■□□□ 1.1
VPS16-208ENST00000487461 CHMP7Q8WUX9 453 aaPredicted RBP21.89■■□□□ 1.09
VPS16-208ENST00000487461 WDR97A6NE52 1622 aa21.88■■□□□ 1.09
VPS16-208ENST00000487461 GRIN2BQ13224 1484 aa21.86■■□□□ 1.09
VPS16-208ENST00000487461 MAGI1Q96QZ7 1491 aaPredicted RBP21.83■■□□□ 1.09
VPS16-208ENST00000487461 GAPVD1Q14C86 1478 aa21.8■■□□□ 1.08
VPS16-208ENST00000487461 ARAP1Q96P48 1450 aa21.79■■□□□ 1.08
VPS16-208ENST00000487461 ABCA10Q8WWZ4 1543 aa21.78■■□□□ 1.08
VPS16-208ENST00000487461 SYNJ2O15056 1496 aa21.77■■□□□ 1.08
VPS16-208ENST00000487461 CLASP1Q7Z460 1538 aa21.75■■□□□ 1.07
VPS16-208ENST00000487461 WRNQ14191 1432 aaPredicted RBP eCLIP21.72■■□□□ 1.07
VPS16-208ENST00000487461 SYNJ1O43426 1573 aa21.72■■□□□ 1.07
VPS16-208ENST00000487461 ABCA5Q8WWZ7 1642 aa21.69■■□□□ 1.06
VPS16-208ENST00000487461 PBRM1Q86U86 1689 aa21.69■■□□□ 1.06
VPS16-208ENST00000487461 TOP2BQ02880 1626 aa21.65■■□□□ 1.06
VPS16-208ENST00000487461 TRHP20396 242 aaPredicted RBP21.64■■□□□ 1.05
VPS16-208ENST00000487461 BIVM-ERCC5R4GMW8 1640 aa21.62■■□□□ 1.05
VPS16-208ENST00000487461 GRIN2AQ12879 1464 aa21.57■■□□□ 1.04
VPS16-208ENST00000487461 FHAD1B1AJZ9 1412 aa21.54■■□□□ 1.04
VPS16-208ENST00000487461 ADAMTS12P58397 1594 aa21.53■■□□□ 1.04
VPS16-208ENST00000487461 NUP160Q12769 1436 aa21.51■■□□□ 1.03
VPS16-208ENST00000487461 CEP170Q5SW79 1584 aa21.48■■□□□ 1.03
VPS16-208ENST00000487461 ERICH3Q5RHP9 1530 aa21.48■■□□□ 1.03
VPS16-208ENST00000487461 ERCC6L2Q5T890 1561 aa21.45■■□□□ 1.02
VPS16-208ENST00000487461 JPH4Q96JJ6 628 aa21.37■■□□□ 1.01
VPS16-208ENST00000487461 SHROOM2Q13796 1616 aa21.36■■□□□ 1.01
VPS16-208ENST00000487461 IGF1RP08069 1367 aa21.33■■□□□ 1
VPS16-208ENST00000487461 PRG4Q92954 1404 aaPredicted RBP21.32■■□□□ 1
VPS16-208ENST00000487461 KIF27Q86VH2 1401 aa21.29■■□□□ 1
Retrieved 100 of 20,778 RNA–protein pairs in 142.8 ms