RNA–Protein interactions for RNA: ENST00000487428.1

PTPRE-209, Transcript of protein tyrosine phosphatase, receptor type E, humanhuman

TSL 3

Gene PTPRE, Length 325 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRE-209ENST00000487428 NISCHQ9Y2I1 1504 aa16.19■□□□□ 0.18
PTPRE-209ENST00000487428 CCDC180Q9P1Z9 1646 aa14.46□□□□□ -0.09
PTPRE-209ENST00000487428 ABCC9O60706 1549 aa13.77□□□□□ -0.21
PTPRE-209ENST00000487428 MYO15BQ96JP2 1530 aa13.59□□□□□ -0.23
PTPRE-209ENST00000487428 DCAF1Q9Y4B6 1507 aa13.53□□□□□ -0.24
PTPRE-209ENST00000487428 ZCCHC6Q5VYS8 1495 aaKnown RBP13.52□□□□□ -0.25
PTPRE-209ENST00000487428 NACADO15069 1562 aa13.52□□□□□ -0.25
PTPRE-209ENST00000487428 RB1CC1Q8TDY2 1594 aa13.46□□□□□ -0.25
PTPRE-209ENST00000487428 UNC13AQ9UPW8 1703 aa13.2□□□□□ -0.3
PTPRE-209ENST00000487428 DCAF8L2P0C7V8 631 aa13.16□□□□□ -0.3
PTPRE-209ENST00000487428 SHROOM4Q9ULL8 1493 aa13.07□□□□□ -0.32
PTPRE-209ENST00000487428 BICRAQ9NZM4 1560 aa13.04□□□□□ -0.32
PTPRE-209ENST00000487428 SCRIBQ14160 1630 aa12.99□□□□□ -0.33
PTPRE-209ENST00000487428 PABPN1Q86U42 306 aaKnown RBP eCLIP12.8□□□□□ -0.36
PTPRE-209ENST00000487428 EIF4G1Q04637 1599 aaKnown RBP12.67□□□□□ -0.38
PTPRE-209ENST00000487428 CC2D2AQ9P2K1 1620 aa12.57□□□□□ -0.4
PTPRE-209ENST00000487428 BAZ1AQ9NRL2 1556 aaPredicted RBP12.56□□□□□ -0.4
PTPRE-209ENST00000487428 SMARCA4P51532 1647 aa12.54□□□□□ -0.4
PTPRE-209ENST00000487428 PEG3Q9GZU2 1588 aa12.52□□□□□ -0.4
PTPRE-209ENST00000487428 DNAJC5BQ9UF47 199 aa12.51□□□□□ -0.41
PTPRE-209ENST00000487428 CECR2Q9BXF3 1484 aa12.5□□□□□ -0.41
PTPRE-209ENST00000487428 SMARCA2P51531 1590 aa12.46□□□□□ -0.42
PTPRE-209ENST00000487428 NCAPD3P42695 1498 aa12.45□□□□□ -0.42
PTPRE-209ENST00000487428 HMGXB3Q12766 1538 aa12.43□□□□□ -0.42
PTPRE-209ENST00000487428 ATAD2BQ9ULI0 1458 aa12.41□□□□□ -0.42
PTPRE-209ENST00000487428 MROH2BQ7Z745 1585 aa12.41□□□□□ -0.42
PTPRE-209ENST00000487428 RSF1Q96T23 1441 aaPredicted RBP12.32□□□□□ -0.44
PTPRE-209ENST00000487428 BAZ1BQ9UIG0 1483 aaKnown RBP12.29□□□□□ -0.44
PTPRE-209ENST00000487428 WIZO95785 1651 aa12.29□□□□□ -0.44
PTPRE-209ENST00000487428 TOP2AP11388 1531 aaKnown RBP12.22□□□□□ -0.45
PTPRE-209ENST00000487428 LAMC3Q9Y6N6 1575 aa12.12□□□□□ -0.47
PTPRE-209ENST00000487428 PRDM2Q13029 1718 aa12.06□□□□□ -0.48
PTPRE-209ENST00000487428 CADPSQ9ULU8 1353 aa12.03□□□□□ -0.48
PTPRE-209ENST00000487428 CFTRP13569 1480 aa12.02□□□□□ -0.48
PTPRE-209ENST00000487428 CCDC88BA6NC98 1476 aa12.02□□□□□ -0.49
PTPRE-209ENST00000487428 PDS5BQ9NTI5 1447 aa11.96□□□□□ -0.49
PTPRE-209ENST00000487428 NESP48681 1621 aa11.96□□□□□ -0.5
PTPRE-209ENST00000487428 KIF21AQ7Z4S6 1674 aa11.93□□□□□ -0.5
PTPRE-209ENST00000487428 THOC2Q8NI27 1593 aaKnown RBP11.88□□□□□ -0.51
PTPRE-209ENST00000487428 SUPT5HO00267 1087 aaKnown RBP11.88□□□□□ -0.51
PTPRE-209ENST00000487428 ERCC6Q03468 1493 aa11.88□□□□□ -0.51
PTPRE-209ENST00000487428 FANCD2Q9BXW9 1451 aa11.87□□□□□ -0.51
PTPRE-209ENST00000487428 CUX2O14529 1486 aa11.85□□□□□ -0.51
PTPRE-209ENST00000487428 CEP164Q9UPV0 1460 aa11.85□□□□□ -0.51
PTPRE-209ENST00000487428 WDR62O43379 1518 aa11.83□□□□□ -0.52
PTPRE-209ENST00000487428 MRC2Q9UBG0 1479 aa11.83□□□□□ -0.52
PTPRE-209ENST00000487428 ABCC8Q09428 1581 aa11.81□□□□□ -0.52
PTPRE-209ENST00000487428 DNMBPQ6XZF7 1577 aa11.75□□□□□ -0.53
PTPRE-209ENST00000487428 URB2Q14146 1524 aaKnown RBP11.74□□□□□ -0.53
PTPRE-209ENST00000487428 TOPBP1Q92547 1522 aa11.71□□□□□ -0.53
PTPRE-209ENST00000487428 BIVM-ERCC5R4GMW8 1640 aa11.68□□□□□ -0.54
PTPRE-209ENST00000487428 WDR97A6NE52 1622 aa11.66□□□□□ -0.54
PTPRE-209ENST00000487428 CUX1P39880 1505 aa11.65□□□□□ -0.55
PTPRE-209ENST00000487428 TOP2BQ02880 1626 aa11.64□□□□□ -0.55
PTPRE-209ENST00000487428 TARBP1Q13395 1621 aaKnown RBP11.63□□□□□ -0.55
PTPRE-209ENST00000487428 IFT140Q96RY7 1462 aa11.63□□□□□ -0.55
PTPRE-209ENST00000487428 POLA1P09884 1462 aaPredicted RBP11.62□□□□□ -0.55
PTPRE-209ENST00000487428 WRNQ14191 1432 aaPredicted RBP eCLIP11.6□□□□□ -0.55
PTPRE-209ENST00000487428 SYNJ1O43426 1573 aa11.58□□□□□ -0.56
PTPRE-209ENST00000487428 FGD5Q6ZNL6 1462 aa11.57□□□□□ -0.56
PTPRE-209ENST00000487428 ABCA10Q8WWZ4 1543 aa11.55□□□□□ -0.56
PTPRE-209ENST00000487428 SOGA1O94964 1423 aa11.53□□□□□ -0.56
PTPRE-209ENST00000487428 EIF4G3O43432 1585 aaKnown RBP11.51□□□□□ -0.57
PTPRE-209ENST00000487428 ABCA5Q8WWZ7 1642 aa11.5□□□□□ -0.57
PTPRE-209ENST00000487428 RAD54L2Q9Y4B4 1467 aa11.48□□□□□ -0.57
PTPRE-209ENST00000487428 ZNF608Q9ULD9 1512 aaPredicted RBP11.48□□□□□ -0.57
PTPRE-209ENST00000487428 PBRM1Q86U86 1689 aa11.45□□□□□ -0.58
PTPRE-209ENST00000487428 ERICH3Q5RHP9 1530 aa11.44□□□□□ -0.58
PTPRE-209ENST00000487428 MAGI1Q96QZ7 1491 aaPredicted RBP11.44□□□□□ -0.58
PTPRE-209ENST00000487428 GRIN2BQ13224 1484 aa11.43□□□□□ -0.58
PTPRE-209ENST00000487428 GAPVD1Q14C86 1478 aa11.43□□□□□ -0.58
PTPRE-209ENST00000487428 AQRO60306 1485 aaKnown RBP eCLIP11.41□□□□□ -0.58
PTPRE-209ENST00000487428 TDRD9Q8NDG6 1382 aaKnown RBP11.39□□□□□ -0.59
PTPRE-209ENST00000487428 CUL7Q14999 1698 aa11.36□□□□□ -0.59
PTPRE-209ENST00000487428 KIF27Q86VH2 1401 aa11.36□□□□□ -0.59
PTPRE-209ENST00000487428 CHD1O14646 1710 aa11.36□□□□□ -0.59
PTPRE-209ENST00000487428 SYNJ2O15056 1496 aa11.35□□□□□ -0.59
PTPRE-209ENST00000487428 ADAMTS12P58397 1594 aa11.35□□□□□ -0.59
PTPRE-209ENST00000487428 SNAPC4Q5SXM2 1469 aa11.34□□□□□ -0.59
PTPRE-209ENST00000487428 FHAD1B1AJZ9 1412 aa11.32□□□□□ -0.6
PTPRE-209ENST00000487428 TRIM41Q8WV44 630 aa11.31□□□□□ -0.6
PTPRE-209ENST00000487428 EEA1Q15075 1411 aa11.3□□□□□ -0.6
PTPRE-209ENST00000487428 IGF1RP08069 1367 aa11.29□□□□□ -0.6
PTPRE-209ENST00000487428 GRIN2AQ12879 1464 aa11.28□□□□□ -0.6
PTPRE-209ENST00000487428 CHIC1Q5VXU3 224 aa11.27□□□□□ -0.61
PTPRE-209ENST00000487428 OSCARQ8IYS5 282 aa11.27□□□□□ -0.61
PTPRE-209ENST00000487428 NUP160Q12769 1436 aa11.26□□□□□ -0.61
PTPRE-209ENST00000487428 CLASP1Q7Z460 1538 aa11.26□□□□□ -0.61
PTPRE-209ENST00000487428 DNAJC5Q9H3Z4 198 aa11.26□□□□□ -0.61
PTPRE-209ENST00000487428 CHMP7Q8WUX9 453 aaPredicted RBP11.22□□□□□ -0.61
PTPRE-209ENST00000487428 PRXQ9BXM0 1461 aa11.22□□□□□ -0.61
PTPRE-209ENST00000487428 SHROOM2Q13796 1616 aa11.21□□□□□ -0.61
PTPRE-209ENST00000487428 CARMIL1Q5VZK9 1371 aa11.21□□□□□ -0.61
PTPRE-209ENST00000487428 CEP170Q5SW79 1584 aa11.2□□□□□ -0.62
PTPRE-209ENST00000487428 RUSC2Q8N2Y8 1516 aa11.2□□□□□ -0.62
PTPRE-209ENST00000487428 RAPGEF2Q9Y4G8 1499 aa11.19□□□□□ -0.62
PTPRE-209ENST00000487428 KIF21BO75037 1637 aa11.17□□□□□ -0.62
PTPRE-209ENST00000487428 KIAA0586Q9BVV6 1533 aa11.17□□□□□ -0.62
PTPRE-209ENST00000487428 CTTNBP2Q8WZ74 1663 aa11.16□□□□□ -0.62
PTPRE-209ENST00000487428 FBLN2P98095 1184 aa11.14□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 62.6 ms