RNA–Protein interactions for RNA: ENST00000487401.1

SREBF1-215, Transcript of sterol regulatory element binding transcription factor 1, humanhuman

TSL 2

Gene SREBF1, Length 477 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SREBF1-215ENST00000487401 NISCHQ9Y2I1 1504 aa30.67■■■□□ 2.5
SREBF1-215ENST00000487401 ABCC9O60706 1549 aa27.35■■□□□ 1.97
SREBF1-215ENST00000487401 CCDC180Q9P1Z9 1646 aa27.29■■□□□ 1.96
SREBF1-215ENST00000487401 DCAF8L2P0C7V8 631 aa26.06■■□□□ 1.76
SREBF1-215ENST00000487401 RB1CC1Q8TDY2 1594 aa26.03■■□□□ 1.76
SREBF1-215ENST00000487401 NACADO15069 1562 aa25.9■■□□□ 1.74
SREBF1-215ENST00000487401 PABPN1Q86U42 306 aaKnown RBP eCLIP25.6■■□□□ 1.69
SREBF1-215ENST00000487401 MYO15BQ96JP2 1530 aa25.58■■□□□ 1.69
SREBF1-215ENST00000487401 DNAJC5BQ9UF47 199 aa25.58■■□□□ 1.69
SREBF1-215ENST00000487401 ZCCHC6Q5VYS8 1495 aaKnown RBP25.42■■□□□ 1.66
SREBF1-215ENST00000487401 DCAF1Q9Y4B6 1507 aa25.31■■□□□ 1.64
SREBF1-215ENST00000487401 BICRAQ9NZM4 1560 aa25.2■■□□□ 1.62
SREBF1-215ENST00000487401 UNC13AQ9UPW8 1703 aa25.17■■□□□ 1.62
SREBF1-215ENST00000487401 SCRIBQ14160 1630 aa24.98■■□□□ 1.59
SREBF1-215ENST00000487401 SHROOM4Q9ULL8 1493 aa24.96■■□□□ 1.59
SREBF1-215ENST00000487401 CECR2Q9BXF3 1484 aa24.64■■□□□ 1.53
SREBF1-215ENST00000487401 EIF4G1Q04637 1599 aaKnown RBP24.62■■□□□ 1.53
SREBF1-215ENST00000487401 CC2D2AQ9P2K1 1620 aa24.61■■□□□ 1.53
SREBF1-215ENST00000487401 NCAPD3P42695 1498 aa23.97■■□□□ 1.43
SREBF1-215ENST00000487401 ATAD2BQ9ULI0 1458 aa23.91■■□□□ 1.42
SREBF1-215ENST00000487401 SMARCA4P51532 1647 aa23.81■■□□□ 1.4
SREBF1-215ENST00000487401 SMARCA2P51531 1590 aa23.81■■□□□ 1.4
SREBF1-215ENST00000487401 BAZ1AQ9NRL2 1556 aaPredicted RBP23.78■■□□□ 1.4
SREBF1-215ENST00000487401 HMGXB3Q12766 1538 aa23.71■■□□□ 1.39
SREBF1-215ENST00000487401 BAZ1BQ9UIG0 1483 aaKnown RBP23.68■■□□□ 1.38
SREBF1-215ENST00000487401 ERCC6Q03468 1493 aa23.64■■□□□ 1.38
SREBF1-215ENST00000487401 MROH2BQ7Z745 1585 aa23.62■■□□□ 1.37
SREBF1-215ENST00000487401 PEG3Q9GZU2 1588 aa23.57■■□□□ 1.36
SREBF1-215ENST00000487401 NESP48681 1621 aa23.5■■□□□ 1.35
SREBF1-215ENST00000487401 CUX2O14529 1486 aa23.49■■□□□ 1.35
SREBF1-215ENST00000487401 DNAJC5Q9H3Z4 198 aa23.41■■□□□ 1.34
SREBF1-215ENST00000487401 PDS5BQ9NTI5 1447 aa23.32■■□□□ 1.32
SREBF1-215ENST00000487401 LAMC3Q9Y6N6 1575 aa23.31■■□□□ 1.32
SREBF1-215ENST00000487401 CADPSQ9ULU8 1353 aa23.3■■□□□ 1.32
SREBF1-215ENST00000487401 WIZO95785 1651 aa23.26■■□□□ 1.31
SREBF1-215ENST00000487401 RSF1Q96T23 1441 aaPredicted RBP23.25■■□□□ 1.31
SREBF1-215ENST00000487401 THOC2Q8NI27 1593 aaKnown RBP23.11■■□□□ 1.29
SREBF1-215ENST00000487401 MRC2Q9UBG0 1479 aa23.05■■□□□ 1.28
SREBF1-215ENST00000487401 TOP2AP11388 1531 aaKnown RBP23.04■■□□□ 1.28
SREBF1-215ENST00000487401 KIF21AQ7Z4S6 1674 aa23.03■■□□□ 1.28
SREBF1-215ENST00000487401 CFTRP13569 1480 aa23■■□□□ 1.27
SREBF1-215ENST00000487401 FANCD2Q9BXW9 1451 aa22.98■■□□□ 1.27
SREBF1-215ENST00000487401 CEP164Q9UPV0 1460 aa22.98■■□□□ 1.27
SREBF1-215ENST00000487401 WDR62O43379 1518 aa22.91■■□□□ 1.26
SREBF1-215ENST00000487401 CCDC88BA6NC98 1476 aa22.85■■□□□ 1.25
SREBF1-215ENST00000487401 URB2Q14146 1524 aaKnown RBP22.74■■□□□ 1.23
SREBF1-215ENST00000487401 OSCARQ8IYS5 282 aa22.59■■□□□ 1.21
SREBF1-215ENST00000487401 IFT140Q96RY7 1462 aa22.54■■□□□ 1.2
SREBF1-215ENST00000487401 ABCC8Q09428 1581 aa22.54■■□□□ 1.2
SREBF1-215ENST00000487401 TOPBP1Q92547 1522 aa22.52■■□□□ 1.2
SREBF1-215ENST00000487401 TRIM41Q8WV44 630 aa22.5■■□□□ 1.19
SREBF1-215ENST00000487401 SUPT5HO00267 1087 aaKnown RBP22.48■■□□□ 1.19
SREBF1-215ENST00000487401 PRDM2Q13029 1718 aa22.47■■□□□ 1.19
SREBF1-215ENST00000487401 ZNF608Q9ULD9 1512 aaPredicted RBP22.46■■□□□ 1.19
SREBF1-215ENST00000487401 DNMBPQ6XZF7 1577 aa22.42■■□□□ 1.18
SREBF1-215ENST00000487401 AQRO60306 1485 aaKnown RBP eCLIP22.32■■□□□ 1.163e-21■■■■■ 63.8
SREBF1-215ENST00000487401 POLA1P09884 1462 aaPredicted RBP22.32■■□□□ 1.16
SREBF1-215ENST00000487401 SOGA1O94964 1423 aa22.31■■□□□ 1.16
SREBF1-215ENST00000487401 FBLN2P98095 1184 aa22.27■■□□□ 1.16
SREBF1-215ENST00000487401 RAD54L2Q9Y4B4 1467 aa22.27■■□□□ 1.16
SREBF1-215ENST00000487401 TDRD9Q8NDG6 1382 aaKnown RBP22.25■■□□□ 1.15
SREBF1-215ENST00000487401 EIF4G3O43432 1585 aaKnown RBP22.24■■□□□ 1.15
SREBF1-215ENST00000487401 TARBP1Q13395 1621 aaKnown RBP22.23■■□□□ 1.15
SREBF1-215ENST00000487401 FGD5Q6ZNL6 1462 aa22.2■■□□□ 1.14
SREBF1-215ENST00000487401 CUX1P39880 1505 aa22.18■■□□□ 1.14
SREBF1-215ENST00000487401 CHMP7Q8WUX9 453 aaPredicted RBP22.12■■□□□ 1.13
SREBF1-215ENST00000487401 SNAPC4Q5SXM2 1469 aa22.07■■□□□ 1.12
SREBF1-215ENST00000487401 GRIN2BQ13224 1484 aa22.06■■□□□ 1.12
SREBF1-215ENST00000487401 ARHGEF11O15085 1522 aa22.06■■□□□ 1.12
SREBF1-215ENST00000487401 CYB5RLQ6IPT4 315 aa22.05■■□□□ 1.12
SREBF1-215ENST00000487401 RIMBP3CA6NJZ7 1639 aa22.04■■□□□ 1.12
SREBF1-215ENST00000487401 RIMBP3BA6NNM3 1639 aa22.04■■□□□ 1.12
SREBF1-215ENST00000487401 RIMBP3Q9UFD9 1639 aa22.04■■□□□ 1.12
SREBF1-215ENST00000487401 WDR97A6NE52 1622 aa22.03■■□□□ 1.12
SREBF1-215ENST00000487401 MAGI1Q96QZ7 1491 aaPredicted RBP22■■□□□ 1.11
SREBF1-215ENST00000487401 GAPVD1Q14C86 1478 aa21.99■■□□□ 1.11
SREBF1-215ENST00000487401 WRNQ14191 1432 aaPredicted RBP eCLIP21.98■■□□□ 1.11
SREBF1-215ENST00000487401 ABCA10Q8WWZ4 1543 aa21.96■■□□□ 1.11
SREBF1-215ENST00000487401 CHD1O14646 1710 aa21.95■■□□□ 1.1
SREBF1-215ENST00000487401 SYNJ2O15056 1496 aa21.94■■□□□ 1.1
SREBF1-215ENST00000487401 SYNJ1O43426 1573 aa21.87■■□□□ 1.09
SREBF1-215ENST00000487401 ARAP1Q96P48 1450 aa21.86■■□□□ 1.09
SREBF1-215ENST00000487401 CLASP1Q7Z460 1538 aa21.82■■□□□ 1.08
SREBF1-215ENST00000487401 TOP2BQ02880 1626 aa21.82■■□□□ 1.08
SREBF1-215ENST00000487401 ABCA5Q8WWZ7 1642 aa21.8■■□□□ 1.08
SREBF1-215ENST00000487401 TRHP20396 242 aaPredicted RBP21.79■■□□□ 1.08
SREBF1-215ENST00000487401 BIVM-ERCC5R4GMW8 1640 aa21.76■■□□□ 1.07
SREBF1-215ENST00000487401 PBRM1Q86U86 1689 aa21.75■■□□□ 1.07
SREBF1-215ENST00000487401 FHAD1B1AJZ9 1412 aa21.74■■□□□ 1.07
SREBF1-215ENST00000487401 GRIN2AQ12879 1464 aa21.73■■□□□ 1.07
SREBF1-215ENST00000487401 ERICH3Q5RHP9 1530 aa21.67■■□□□ 1.06
SREBF1-215ENST00000487401 ADAMTS12P58397 1594 aa21.66■■□□□ 1.06
SREBF1-215ENST00000487401 NUP160Q12769 1436 aa21.66■■□□□ 1.06
SREBF1-215ENST00000487401 CEP170Q5SW79 1584 aa21.57■■□□□ 1.04
SREBF1-215ENST00000487401 JPH4Q96JJ6 628 aa21.57■■□□□ 1.04
SREBF1-215ENST00000487401 KIF27Q86VH2 1401 aa21.55■■□□□ 1.04
SREBF1-215ENST00000487401 IGF1RP08069 1367 aa21.54■■□□□ 1.04
SREBF1-215ENST00000487401 ERCC6L2Q5T890 1561 aa21.5■■□□□ 1.03
SREBF1-215ENST00000487401 PRG4Q92954 1404 aaPredicted RBP21.5■■□□□ 1.03
SREBF1-215ENST00000487401 SHROOM2Q13796 1616 aa21.42■■□□□ 1.02
Retrieved 100 of 20,778 RNA–protein pairs in 7.6 ms