RNA–Protein interactions for RNA: ENST00000487354.1

MCF2L-228, Transcript of MCF.2 cell line derived transforming sequence like, humanhuman

TSL 3

Gene MCF2L, Length 553 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2L-228ENST00000487354 NISCHQ9Y2I1 1504 aa39.52■■■■□ 3.92
MCF2L-228ENST00000487354 ABCC9O60706 1549 aa35.92■■■■□ 3.34
MCF2L-228ENST00000487354 CCDC180Q9P1Z9 1646 aa35.7■■■■□ 3.31
MCF2L-228ENST00000487354 RB1CC1Q8TDY2 1594 aa34.05■■■■□ 3.04
MCF2L-228ENST00000487354 DNAJC5BQ9UF47 199 aa34.04■■■■□ 3.04
MCF2L-228ENST00000487354 NACADO15069 1562 aa33.74■■■□□ 2.99
MCF2L-228ENST00000487354 UNC13AQ9UPW8 1703 aa33.5■■■□□ 2.95
MCF2L-228ENST00000487354 PABPN1Q86U42 306 aaKnown RBP eCLIP33.3■■■□□ 2.923e-7■□□□□ 10.5
MCF2L-228ENST00000487354 BICRAQ9NZM4 1560 aa33.21■■■□□ 2.91
MCF2L-228ENST00000487354 DCAF8L2P0C7V8 631 aa33.21■■■□□ 2.91
MCF2L-228ENST00000487354 MYO15BQ96JP2 1530 aa33.2■■■□□ 2.91
MCF2L-228ENST00000487354 ZCCHC6Q5VYS8 1495 aaKnown RBP32.73■■■□□ 2.83
MCF2L-228ENST00000487354 DCAF1Q9Y4B6 1507 aa32.65■■■□□ 2.82
MCF2L-228ENST00000487354 SHROOM4Q9ULL8 1493 aa32.62■■■□□ 2.81
MCF2L-228ENST00000487354 CC2D2AQ9P2K1 1620 aa32.51■■■□□ 2.79
MCF2L-228ENST00000487354 SCRIBQ14160 1630 aa32.45■■■□□ 2.79
MCF2L-228ENST00000487354 CECR2Q9BXF3 1484 aa32.39■■■□□ 2.78
MCF2L-228ENST00000487354 EIF4G1Q04637 1599 aaKnown RBP32.35■■■□□ 2.77
MCF2L-228ENST00000487354 DNAJC5Q9H3Z4 198 aa31.42■■■□□ 2.62
MCF2L-228ENST00000487354 NCAPD3P42695 1498 aa31.14■■■□□ 2.58
MCF2L-228ENST00000487354 CUX2O14529 1486 aa31.11■■■□□ 2.57
MCF2L-228ENST00000487354 ATAD2BQ9ULI0 1458 aa31.01■■■□□ 2.56
MCF2L-228ENST00000487354 ERCC6Q03468 1493 aa30.95■■■□□ 2.55
MCF2L-228ENST00000487354 SMARCA4P51532 1647 aa30.95■■■□□ 2.55
MCF2L-228ENST00000487354 HMGXB3Q12766 1538 aa30.93■■■□□ 2.54
MCF2L-228ENST00000487354 SMARCA2P51531 1590 aa30.88■■■□□ 2.53
MCF2L-228ENST00000487354 NESP48681 1621 aa30.82■■■□□ 2.52
MCF2L-228ENST00000487354 PEG3Q9GZU2 1588 aa30.68■■■□□ 2.5
MCF2L-228ENST00000487354 BAZ1AQ9NRL2 1556 aaPredicted RBP30.67■■■□□ 2.5
MCF2L-228ENST00000487354 THOC2Q8NI27 1593 aaKnown RBP30.66■■■□□ 2.5
MCF2L-228ENST00000487354 BAZ1BQ9UIG0 1483 aaKnown RBP30.65■■■□□ 2.5
MCF2L-228ENST00000487354 LAMC3Q9Y6N6 1575 aa30.52■■■□□ 2.48
MCF2L-228ENST00000487354 KIF21AQ7Z4S6 1674 aa30.49■■■□□ 2.47
MCF2L-228ENST00000487354 MROH2BQ7Z745 1585 aa30.48■■■□□ 2.47
MCF2L-228ENST00000487354 PDS5BQ9NTI5 1447 aa30.24■■■□□ 2.43
MCF2L-228ENST00000487354 CADPSQ9ULU8 1353 aa30.13■■■□□ 2.41
MCF2L-228ENST00000487354 WIZO95785 1651 aa30.12■■■□□ 2.41
MCF2L-228ENST00000487354 WDR62O43379 1518 aa30.11■■■□□ 2.41
MCF2L-228ENST00000487354 MRC2Q9UBG0 1479 aa30.09■■■□□ 2.41
MCF2L-228ENST00000487354 CEP164Q9UPV0 1460 aa29.87■■■□□ 2.37
MCF2L-228ENST00000487354 FANCD2Q9BXW9 1451 aa29.82■■■□□ 2.36
MCF2L-228ENST00000487354 TRIM41Q8WV44 630 aa29.81■■■□□ 2.36
MCF2L-228ENST00000487354 CFTRP13569 1480 aa29.78■■■□□ 2.36
MCF2L-228ENST00000487354 TOP2AP11388 1531 aaKnown RBP29.68■■■□□ 2.34
MCF2L-228ENST00000487354 URB2Q14146 1524 aaKnown RBP29.67■■■□□ 2.34
MCF2L-228ENST00000487354 RSF1Q96T23 1441 aaPredicted RBP29.66■■■□□ 2.34
MCF2L-228ENST00000487354 PRDM2Q13029 1718 aa29.59■■■□□ 2.33
MCF2L-228ENST00000487354 OSCARQ8IYS5 282 aa29.47■■■□□ 2.31
MCF2L-228ENST00000487354 RIMBP3CA6NJZ7 1639 aa29.36■■■□□ 2.29
MCF2L-228ENST00000487354 RIMBP3BA6NNM3 1639 aa29.36■■■□□ 2.29
MCF2L-228ENST00000487354 RIMBP3Q9UFD9 1639 aa29.36■■■□□ 2.29
MCF2L-228ENST00000487354 ZNF608Q9ULD9 1512 aaPredicted RBP29.35■■■□□ 2.29
MCF2L-228ENST00000487354 CCDC88BA6NC98 1476 aa29.3■■■□□ 2.28
MCF2L-228ENST00000487354 IFT140Q96RY7 1462 aa29.29■■■□□ 2.28
MCF2L-228ENST00000487354 TOPBP1Q92547 1522 aa29.25■■■□□ 2.27
MCF2L-228ENST00000487354 EIF4G3O43432 1585 aaKnown RBP29.21■■■□□ 2.27
MCF2L-228ENST00000487354 ARHGEF11O15085 1522 aa29.19■■■□□ 2.26
MCF2L-228ENST00000487354 DNMBPQ6XZF7 1577 aa29.13■■■□□ 2.25
MCF2L-228ENST00000487354 TARBP1Q13395 1621 aaKnown RBP29.1■■■□□ 2.25
MCF2L-228ENST00000487354 CHD1O14646 1710 aa29.09■■■□□ 2.25
MCF2L-228ENST00000487354 ABCC8Q09428 1581 aa29.07■■■□□ 2.24
MCF2L-228ENST00000487354 AQRO60306 1485 aaKnown RBP eCLIP28.97■■■□□ 2.232e-6■■□□□ 13.4
MCF2L-228ENST00000487354 POLA1P09884 1462 aaPredicted RBP28.94■■■□□ 2.22
MCF2L-228ENST00000487354 ARAP1Q96P48 1450 aa28.9■■■□□ 2.22
MCF2L-228ENST00000487354 CYB5RLQ6IPT4 315 aa28.82■■■□□ 2.2
MCF2L-228ENST00000487354 RAD54L2Q9Y4B4 1467 aa28.82■■■□□ 2.2
MCF2L-228ENST00000487354 CLASP1Q7Z460 1538 aa28.73■■■□□ 2.19
MCF2L-228ENST00000487354 WDR97A6NE52 1622 aa28.72■■■□□ 2.19
MCF2L-228ENST00000487354 TDRD9Q8NDG6 1382 aaKnown RBP28.7■■■□□ 2.18
MCF2L-228ENST00000487354 SNAPC4Q5SXM2 1469 aa28.7■■■□□ 2.18
MCF2L-228ENST00000487354 SOGA1O94964 1423 aa28.69■■■□□ 2.18
MCF2L-228ENST00000487354 FGD5Q6ZNL6 1462 aa28.69■■■□□ 2.18
MCF2L-228ENST00000487354 FBLN2P98095 1184 aa28.67■■■□□ 2.18
MCF2L-228ENST00000487354 CUX1P39880 1505 aa28.66■■■□□ 2.18
MCF2L-228ENST00000487354 MAGI1Q96QZ7 1491 aaPredicted RBP28.59■■■□□ 2.17
MCF2L-228ENST00000487354 SYNJ1O43426 1573 aa28.58■■■□□ 2.17
MCF2L-228ENST00000487354 TRHP20396 242 aaPredicted RBP28.54■■■□□ 2.16
MCF2L-228ENST00000487354 PBRM1Q86U86 1689 aa28.54■■■□□ 2.16
MCF2L-228ENST00000487354 GRIN2BQ13224 1484 aa28.53■■■□□ 2.16
MCF2L-228ENST00000487354 SYNJ2O15056 1496 aa28.5■■■□□ 2.15
MCF2L-228ENST00000487354 ABCA5Q8WWZ7 1642 aa28.43■■■□□ 2.14
MCF2L-228ENST00000487354 CHMP7Q8WUX9 453 aaPredicted RBP28.42■■■□□ 2.14
MCF2L-228ENST00000487354 GAPVD1Q14C86 1478 aa28.38■■■□□ 2.13
MCF2L-228ENST00000487354 ABCA10Q8WWZ4 1543 aa28.35■■■□□ 2.13
MCF2L-228ENST00000487354 ERCC6L2Q5T890 1561 aa28.27■■■□□ 2.12
MCF2L-228ENST00000487354 ADAMTS12P58397 1594 aa28.22■■■□□ 2.11
MCF2L-228ENST00000487354 GRIN2AQ12879 1464 aa28.2■■■□□ 2.1
MCF2L-228ENST00000487354 CEP170Q5SW79 1584 aa28.19■■■□□ 2.1
MCF2L-228ENST00000487354 BIVM-ERCC5R4GMW8 1640 aa28.15■■■□□ 2.1
MCF2L-228ENST00000487354 NUP160Q12769 1436 aa28.15■■■□□ 2.1
MCF2L-228ENST00000487354 SHROOM2Q13796 1616 aa28.14■■■□□ 2.1
MCF2L-228ENST00000487354 TOP2BQ02880 1626 aa28.1■■■□□ 2.09
MCF2L-228ENST00000487354 WRNQ14191 1432 aaPredicted RBP eCLIP28.07■■■□□ 2.08
MCF2L-228ENST00000487354 FHAD1B1AJZ9 1412 aa28■■■□□ 2.07
MCF2L-228ENST00000487354 KIF13AQ9H1H9 1805 aa27.99■■■□□ 2.07
MCF2L-228ENST00000487354 ERICH3Q5RHP9 1530 aa27.98■■■□□ 2.07
MCF2L-228ENST00000487354 AEBP2Q6ZN18 517 aaPredicted RBP27.91■■■□□ 2.06
MCF2L-228ENST00000487354 SUPT5HO00267 1087 aaKnown RBP27.88■■■□□ 2.05
MCF2L-228ENST00000487354 RUSC2Q8N2Y8 1516 aa27.85■■■□□ 2.05
MCF2L-228ENST00000487354 PRG4Q92954 1404 aaPredicted RBP27.82■■■□□ 2.04
Retrieved 100 of 20,778 RNA–protein pairs in 268.4 ms