RNA–Protein interactions for RNA: ENST00000487332.1

RNF220-215, Transcript of ring finger protein 220, humanhuman

TSL 3

Gene RNF220, Length 452 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNF220-215ENST00000487332 NISCHQ9Y2I1 1504 aa25.37■■□□□ 1.65
RNF220-215ENST00000487332 CCDC180Q9P1Z9 1646 aa22.71■■□□□ 1.23
RNF220-215ENST00000487332 ABCC9O60706 1549 aa22.11■■□□□ 1.13
RNF220-215ENST00000487332 RB1CC1Q8TDY2 1594 aa21.36■■□□□ 1.01
RNF220-215ENST00000487332 NACADO15069 1562 aa21.34■■□□□ 1.01
RNF220-215ENST00000487332 MYO15BQ96JP2 1530 aa21.27■■□□□ 1
RNF220-215ENST00000487332 ZCCHC6Q5VYS8 1495 aaKnown RBP21.16■□□□□ 0.98
RNF220-215ENST00000487332 DCAF1Q9Y4B6 1507 aa21.11■□□□□ 0.97
RNF220-215ENST00000487332 DCAF8L2P0C7V8 631 aa20.93■□□□□ 0.94
RNF220-215ENST00000487332 UNC13AQ9UPW8 1703 aa20.81■□□□□ 0.92
RNF220-215ENST00000487332 BICRAQ9NZM4 1560 aa20.7■□□□□ 0.9
RNF220-215ENST00000487332 SHROOM4Q9ULL8 1493 aa20.65■□□□□ 0.9
RNF220-215ENST00000487332 SCRIBQ14160 1630 aa20.55■□□□□ 0.88
RNF220-215ENST00000487332 PABPN1Q86U42 306 aaKnown RBP eCLIP20.54■□□□□ 0.88
RNF220-215ENST00000487332 DNAJC5BQ9UF47 199 aa20.31■□□□□ 0.84
RNF220-215ENST00000487332 EIF4G1Q04637 1599 aaKnown RBP20.17■□□□□ 0.82
RNF220-215ENST00000487332 CC2D2AQ9P2K1 1620 aa20.07■□□□□ 0.8
RNF220-215ENST00000487332 CECR2Q9BXF3 1484 aa19.93■□□□□ 0.78
RNF220-215ENST00000487332 SMARCA4P51532 1647 aa19.73■□□□□ 0.75
RNF220-215ENST00000487332 BAZ1AQ9NRL2 1556 aaPredicted RBP19.7■□□□□ 0.74
RNF220-215ENST00000487332 NCAPD3P42695 1498 aa19.67■□□□□ 0.74
RNF220-215ENST00000487332 SMARCA2P51531 1590 aa19.64■□□□□ 0.73
RNF220-215ENST00000487332 ATAD2BQ9ULI0 1458 aa19.62■□□□□ 0.73
RNF220-215ENST00000487332 PEG3Q9GZU2 1588 aa19.61■□□□□ 0.73
RNF220-215ENST00000487332 HMGXB3Q12766 1538 aa19.61■□□□□ 0.73
RNF220-215ENST00000487332 MROH2BQ7Z745 1585 aa19.5■□□□□ 0.71
RNF220-215ENST00000487332 BAZ1BQ9UIG0 1483 aaKnown RBP19.44■□□□□ 0.7
RNF220-215ENST00000487332 WIZO95785 1651 aa19.27■□□□□ 0.67
RNF220-215ENST00000487332 RSF1Q96T23 1441 aaPredicted RBP19.25■□□□□ 0.67
RNF220-215ENST00000487332 LAMC3Q9Y6N6 1575 aa19.19■□□□□ 0.66
RNF220-215ENST00000487332 TOP2AP11388 1531 aaKnown RBP19.15■□□□□ 0.66
RNF220-215ENST00000487332 NESP48681 1621 aa19.11■□□□□ 0.65
RNF220-215ENST00000487332 ERCC6Q03468 1493 aa19.1■□□□□ 0.65
RNF220-215ENST00000487332 CUX2O14529 1486 aa19.06■□□□□ 0.64
RNF220-215ENST00000487332 CADPSQ9ULU8 1353 aa19.04■□□□□ 0.64
RNF220-215ENST00000487332 PDS5BQ9NTI5 1447 aa19■□□□□ 0.63
RNF220-215ENST00000487332 THOC2Q8NI27 1593 aaKnown RBP18.98■□□□□ 0.63
RNF220-215ENST00000487332 CFTRP13569 1480 aa18.95■□□□□ 0.62
RNF220-215ENST00000487332 KIF21AQ7Z4S6 1674 aa18.93■□□□□ 0.62
RNF220-215ENST00000487332 CCDC88BA6NC98 1476 aa18.84■□□□□ 0.61
RNF220-215ENST00000487332 MRC2Q9UBG0 1479 aa18.84■□□□□ 0.61
RNF220-215ENST00000487332 CEP164Q9UPV0 1460 aa18.83■□□□□ 0.6
RNF220-215ENST00000487332 WDR62O43379 1518 aa18.82■□□□□ 0.6
RNF220-215ENST00000487332 PRDM2Q13029 1718 aa18.82■□□□□ 0.6
RNF220-215ENST00000487332 FANCD2Q9BXW9 1451 aa18.81■□□□□ 0.6
RNF220-215ENST00000487332 URB2Q14146 1524 aaKnown RBP18.63■□□□□ 0.57
RNF220-215ENST00000487332 ABCC8Q09428 1581 aa18.56■□□□□ 0.56
RNF220-215ENST00000487332 DNMBPQ6XZF7 1577 aa18.52■□□□□ 0.56
RNF220-215ENST00000487332 TOPBP1Q92547 1522 aa18.51■□□□□ 0.55
RNF220-215ENST00000487332 SUPT5HO00267 1087 aaKnown RBP18.46■□□□□ 0.55
RNF220-215ENST00000487332 IFT140Q96RY7 1462 aa18.46■□□□□ 0.54
RNF220-215ENST00000487332 DNAJC5Q9H3Z4 198 aa18.45■□□□□ 0.54
RNF220-215ENST00000487332 POLA1P09884 1462 aaPredicted RBP18.35■□□□□ 0.53
RNF220-215ENST00000487332 TARBP1Q13395 1621 aaKnown RBP18.34■□□□□ 0.53
RNF220-215ENST00000487332 WDR97A6NE52 1622 aa18.32■□□□□ 0.52
RNF220-215ENST00000487332 CUX1P39880 1505 aa18.32■□□□□ 0.52
RNF220-215ENST00000487332 EIF4G3O43432 1585 aaKnown RBP18.3■□□□□ 0.52
RNF220-215ENST00000487332 ZNF608Q9ULD9 1512 aaPredicted RBP18.29■□□□□ 0.52
RNF220-215ENST00000487332 FGD5Q6ZNL6 1462 aa18.27■□□□□ 0.52
RNF220-215ENST00000487332 SOGA1O94964 1423 aa18.21■□□□□ 0.51
RNF220-215ENST00000487332 BIVM-ERCC5R4GMW8 1640 aa18.2■□□□□ 0.5
RNF220-215ENST00000487332 RAD54L2Q9Y4B4 1467 aa18.19■□□□□ 0.5
RNF220-215ENST00000487332 TOP2BQ02880 1626 aa18.18■□□□□ 0.5
RNF220-215ENST00000487332 WRNQ14191 1432 aaPredicted RBP eCLIP18.15■□□□□ 0.5
RNF220-215ENST00000487332 AQRO60306 1485 aaKnown RBP eCLIP18.14■□□□□ 0.5
RNF220-215ENST00000487332 ABCA10Q8WWZ4 1543 aa18.14■□□□□ 0.49
RNF220-215ENST00000487332 SYNJ1O43426 1573 aa18.12■□□□□ 0.49
RNF220-215ENST00000487332 ABCA5Q8WWZ7 1642 aa18.1■□□□□ 0.49
RNF220-215ENST00000487332 OSCARQ8IYS5 282 aa18.09■□□□□ 0.49
RNF220-215ENST00000487332 GRIN2BQ13224 1484 aa18.08■□□□□ 0.49
RNF220-215ENST00000487332 MAGI1Q96QZ7 1491 aaPredicted RBP18.08■□□□□ 0.49
RNF220-215ENST00000487332 TDRD9Q8NDG6 1382 aaKnown RBP18.07■□□□□ 0.48
RNF220-215ENST00000487332 SNAPC4Q5SXM2 1469 aa18.05■□□□□ 0.48
RNF220-215ENST00000487332 PBRM1Q86U86 1689 aa18.04■□□□□ 0.48
RNF220-215ENST00000487332 GAPVD1Q14C86 1478 aa18.04■□□□□ 0.48
RNF220-215ENST00000487332 CHD1O14646 1710 aa18.03■□□□□ 0.48
RNF220-215ENST00000487332 SYNJ2O15056 1496 aa17.99■□□□□ 0.47
RNF220-215ENST00000487332 ERICH3Q5RHP9 1530 aa17.94■□□□□ 0.46
RNF220-215ENST00000487332 ADAMTS12P58397 1594 aa17.93■□□□□ 0.46
RNF220-215ENST00000487332 CLASP1Q7Z460 1538 aa17.92■□□□□ 0.46
RNF220-215ENST00000487332 ARHGEF11O15085 1522 aa17.89■□□□□ 0.45
RNF220-215ENST00000487332 RIMBP3CA6NJZ7 1639 aa17.89■□□□□ 0.45
RNF220-215ENST00000487332 RIMBP3BA6NNM3 1639 aa17.89■□□□□ 0.45
RNF220-215ENST00000487332 RIMBP3Q9UFD9 1639 aa17.89■□□□□ 0.45
RNF220-215ENST00000487332 FHAD1B1AJZ9 1412 aa17.86■□□□□ 0.45
RNF220-215ENST00000487332 GRIN2AQ12879 1464 aa17.85■□□□□ 0.45
RNF220-215ENST00000487332 CHMP7Q8WUX9 453 aaPredicted RBP17.85■□□□□ 0.45
RNF220-215ENST00000487332 FBLN2P98095 1184 aa17.84■□□□□ 0.45
RNF220-215ENST00000487332 NUP160Q12769 1436 aa17.81■□□□□ 0.44
RNF220-215ENST00000487332 KIF27Q86VH2 1401 aa17.79■□□□□ 0.44
RNF220-215ENST00000487332 CUL7Q14999 1698 aa17.77■□□□□ 0.43
RNF220-215ENST00000487332 CEP170Q5SW79 1584 aa17.75■□□□□ 0.43
RNF220-215ENST00000487332 ARAP1Q96P48 1450 aa17.74■□□□□ 0.43
RNF220-215ENST00000487332 SHROOM2Q13796 1616 aa17.71■□□□□ 0.43
RNF220-215ENST00000487332 IGF1RP08069 1367 aa17.68■□□□□ 0.42
RNF220-215ENST00000487332 RUSC2Q8N2Y8 1516 aa17.67■□□□□ 0.42
RNF220-215ENST00000487332 TRIM41Q8WV44 630 aa17.67■□□□□ 0.42
RNF220-215ENST00000487332 KIAA0586Q9BVV6 1533 aa17.58■□□□□ 0.41
RNF220-215ENST00000487332 CARMIL1Q5VZK9 1371 aa17.58■□□□□ 0.4
RNF220-215ENST00000487332 CYB5RLQ6IPT4 315 aa17.56■□□□□ 0.4
Retrieved 100 of 20,778 RNA–protein pairs in 140.4 ms