RNA–Protein interactions for RNA: ENST00000487215.1

SMPDL3A-202, Transcript of sphingomyelin phosphodiesterase acid like 3A, humanhuman

TSL 2

Gene SMPDL3A, Length 903 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMPDL3A-202ENST00000487215 NISCHQ9Y2I1 1504 aa49.29■■■■■ 5.48
SMPDL3A-202ENST00000487215 ABCC9O60706 1549 aa44.62■■■■■ 4.73
SMPDL3A-202ENST00000487215 CCDC180Q9P1Z9 1646 aa44.33■■■■■ 4.69
SMPDL3A-202ENST00000487215 RB1CC1Q8TDY2 1594 aa42.34■■■■■ 4.37
SMPDL3A-202ENST00000487215 DNAJC5BQ9UF47 199 aa42.1■■■■■ 4.33
SMPDL3A-202ENST00000487215 NACADO15069 1562 aa41.98■■■■■ 4.31
SMPDL3A-202ENST00000487215 DCAF8L2P0C7V8 631 aa41.67■■■■■ 4.26
SMPDL3A-202ENST00000487215 PABPN1Q86U42 306 aaKnown RBP eCLIP41.49■■■■■ 4.23
SMPDL3A-202ENST00000487215 UNC13AQ9UPW8 1703 aa41.35■■■■■ 4.21
SMPDL3A-202ENST00000487215 MYO15BQ96JP2 1530 aa41.32■■■■■ 4.2
SMPDL3A-202ENST00000487215 BICRAQ9NZM4 1560 aa41.14■■■■■ 4.18
SMPDL3A-202ENST00000487215 ZCCHC6Q5VYS8 1495 aaKnown RBP40.81■■■■■ 4.12
SMPDL3A-202ENST00000487215 DCAF1Q9Y4B6 1507 aa40.69■■■■■ 4.1
SMPDL3A-202ENST00000487215 SHROOM4Q9ULL8 1493 aa40.55■■■■■ 4.08
SMPDL3A-202ENST00000487215 SCRIBQ14160 1630 aa40.39■■■■■ 4.06
SMPDL3A-202ENST00000487215 CC2D2AQ9P2K1 1620 aa40.28■■■■■ 4.04
SMPDL3A-202ENST00000487215 CECR2Q9BXF3 1484 aa40.22■■■■■ 4.03
SMPDL3A-202ENST00000487215 EIF4G1Q04637 1599 aaKnown RBP40.14■■■■■ 4.02
SMPDL3A-202ENST00000487215 DNAJC5Q9H3Z4 198 aa38.83■■■■□ 3.81
SMPDL3A-202ENST00000487215 NCAPD3P42695 1498 aa38.77■■■■□ 3.8
SMPDL3A-202ENST00000487215 ATAD2BQ9ULI0 1458 aa38.62■■■■□ 3.77
SMPDL3A-202ENST00000487215 CUX2O14529 1486 aa38.56■■■■□ 3.76
SMPDL3A-202ENST00000487215 ERCC6Q03468 1493 aa38.53■■■■□ 3.76
SMPDL3A-202ENST00000487215 SMARCA4P51532 1647 aa38.51■■■■□ 3.76
SMPDL3A-202ENST00000487215 SMARCA2P51531 1590 aa38.48■■■■□ 3.75
SMPDL3A-202ENST00000487215 HMGXB3Q12766 1538 aa38.46■■■■□ 3.75
SMPDL3A-202ENST00000487215 BAZ1AQ9NRL2 1556 aaPredicted RBP38.27■■■■□ 3.72
SMPDL3A-202ENST00000487215 NESP48681 1621 aa38.26■■■■□ 3.71
SMPDL3A-202ENST00000487215 BAZ1BQ9UIG0 1483 aaKnown RBP38.22■■■■□ 3.71
SMPDL3A-202ENST00000487215 PEG3Q9GZU2 1588 aa38.14■■■■□ 3.7
SMPDL3A-202ENST00000487215 MROH2BQ7Z745 1585 aa37.98■■■■□ 3.67
SMPDL3A-202ENST00000487215 THOC2Q8NI27 1593 aaKnown RBP37.93■■■■□ 3.66
SMPDL3A-202ENST00000487215 LAMC3Q9Y6N6 1575 aa37.93■■■■□ 3.66
SMPDL3A-202ENST00000487215 KIF21AQ7Z4S6 1674 aa37.72■■■■□ 3.63
SMPDL3A-202ENST00000487215 PDS5BQ9NTI5 1447 aa37.71■■■■□ 3.63
SMPDL3A-202ENST00000487215 CADPSQ9ULU8 1353 aa37.57■■■■□ 3.61
SMPDL3A-202ENST00000487215 WIZO95785 1651 aa37.5■■■■□ 3.59
SMPDL3A-202ENST00000487215 MRC2Q9UBG0 1479 aa37.42■■■■□ 3.58
SMPDL3A-202ENST00000487215 WDR62O43379 1518 aa37.36■■■■□ 3.57
SMPDL3A-202ENST00000487215 CEP164Q9UPV0 1460 aa37.21■■■■□ 3.55
SMPDL3A-202ENST00000487215 FANCD2Q9BXW9 1451 aa37.15■■■■□ 3.54
SMPDL3A-202ENST00000487215 CFTRP13569 1480 aa37.1■■■■□ 3.53
SMPDL3A-202ENST00000487215 RSF1Q96T23 1441 aaPredicted RBP37.1■■■■□ 3.53
SMPDL3A-202ENST00000487215 TOP2AP11388 1531 aaKnown RBP37.02■■■■□ 3.52
SMPDL3A-202ENST00000487215 TRIM41Q8WV44 630 aa37.02■■■■□ 3.52
SMPDL3A-202ENST00000487215 URB2Q14146 1524 aaKnown RBP36.88■■■■□ 3.49
SMPDL3A-202ENST00000487215 OSCARQ8IYS5 282 aa36.73■■■■□ 3.47
SMPDL3A-202ENST00000487215 PRDM2Q13029 1718 aa36.65■■■■□ 3.46
SMPDL3A-202ENST00000487215 CCDC88BA6NC98 1476 aa36.6■■■■□ 3.45
SMPDL3A-202ENST00000487215 IFT140Q96RY7 1462 aa36.49■■■■□ 3.43
SMPDL3A-202ENST00000487215 ZNF608Q9ULD9 1512 aaPredicted RBP36.47■■■■□ 3.43
SMPDL3A-202ENST00000487215 TOPBP1Q92547 1522 aa36.43■■■■□ 3.42
SMPDL3A-202ENST00000487215 RIMBP3CA6NJZ7 1639 aa36.31■■■■□ 3.4
SMPDL3A-202ENST00000487215 RIMBP3BA6NNM3 1639 aa36.31■■■■□ 3.4
SMPDL3A-202ENST00000487215 RIMBP3Q9UFD9 1639 aa36.31■■■■□ 3.4
SMPDL3A-202ENST00000487215 ABCC8Q09428 1581 aa36.3■■■■□ 3.4
SMPDL3A-202ENST00000487215 DNMBPQ6XZF7 1577 aa36.26■■■■□ 3.39
SMPDL3A-202ENST00000487215 EIF4G3O43432 1585 aaKnown RBP36.25■■■■□ 3.39
SMPDL3A-202ENST00000487215 ARHGEF11O15085 1522 aa36.18■■■■□ 3.38
SMPDL3A-202ENST00000487215 TARBP1Q13395 1621 aaKnown RBP36.12■■■■□ 3.37
SMPDL3A-202ENST00000487215 AQRO60306 1485 aaKnown RBP eCLIP36.09■■■■□ 3.37
SMPDL3A-202ENST00000487215 POLA1P09884 1462 aaPredicted RBP36.04■■■■□ 3.36
SMPDL3A-202ENST00000487215 CHD1O14646 1710 aa36■■■■□ 3.35
SMPDL3A-202ENST00000487215 RAD54L2Q9Y4B4 1467 aa35.92■■■■□ 3.34
SMPDL3A-202ENST00000487215 CYB5RLQ6IPT4 315 aa35.9■■■■□ 3.34
SMPDL3A-202ENST00000487215 FBLN2P98095 1184 aa35.88■■■■□ 3.33
SMPDL3A-202ENST00000487215 SOGA1O94964 1423 aa35.85■■■■□ 3.33
SMPDL3A-202ENST00000487215 TDRD9Q8NDG6 1382 aaKnown RBP35.82■■■■□ 3.32
SMPDL3A-202ENST00000487215 ARAP1Q96P48 1450 aa35.81■■■■□ 3.32
SMPDL3A-202ENST00000487215 FGD5Q6ZNL6 1462 aa35.78■■■■□ 3.32
SMPDL3A-202ENST00000487215 SNAPC4Q5SXM2 1469 aa35.73■■■■□ 3.31
SMPDL3A-202ENST00000487215 WDR97A6NE52 1622 aa35.72■■■■□ 3.31
SMPDL3A-202ENST00000487215 CUX1P39880 1505 aa35.7■■■■□ 3.31
SMPDL3A-202ENST00000487215 CLASP1Q7Z460 1538 aa35.62■■■■□ 3.29
SMPDL3A-202ENST00000487215 MAGI1Q96QZ7 1491 aaPredicted RBP35.6■■■■□ 3.29
SMPDL3A-202ENST00000487215 TRHP20396 242 aaPredicted RBP35.58■■■■□ 3.29
SMPDL3A-202ENST00000487215 GRIN2BQ13224 1484 aa35.58■■■■□ 3.29
SMPDL3A-202ENST00000487215 CHMP7Q8WUX9 453 aaPredicted RBP35.57■■■■□ 3.28
SMPDL3A-202ENST00000487215 SYNJ1O43426 1573 aa35.55■■■■□ 3.28
SMPDL3A-202ENST00000487215 SYNJ2O15056 1496 aa35.49■■■■□ 3.27
SMPDL3A-202ENST00000487215 GAPVD1Q14C86 1478 aa35.41■■■■□ 3.26
SMPDL3A-202ENST00000487215 PBRM1Q86U86 1689 aa35.41■■■■□ 3.26
SMPDL3A-202ENST00000487215 ABCA10Q8WWZ4 1543 aa35.35■■■■□ 3.25
SMPDL3A-202ENST00000487215 ABCA5Q8WWZ7 1642 aa35.33■■■■□ 3.25
SMPDL3A-202ENST00000487215 SUPT5HO00267 1087 aaKnown RBP35.21■■■■□ 3.23
SMPDL3A-202ENST00000487215 WRNQ14191 1432 aaPredicted RBP eCLIP35.14■■■■□ 3.22
SMPDL3A-202ENST00000487215 GRIN2AQ12879 1464 aa35.13■■■■□ 3.21
SMPDL3A-202ENST00000487215 ADAMTS12P58397 1594 aa35.08■■■■□ 3.21
SMPDL3A-202ENST00000487215 ERCC6L2Q5T890 1561 aa35.05■■■■□ 3.2
SMPDL3A-202ENST00000487215 BIVM-ERCC5R4GMW8 1640 aa35.05■■■■□ 3.2
SMPDL3A-202ENST00000487215 TOP2BQ02880 1626 aa35.04■■■■□ 3.2
SMPDL3A-202ENST00000487215 NUP160Q12769 1436 aa35.03■■■■□ 3.2
SMPDL3A-202ENST00000487215 CEP170Q5SW79 1584 aa35.03■■■■□ 3.2
SMPDL3A-202ENST00000487215 FHAD1B1AJZ9 1412 aa34.96■■■■□ 3.19
SMPDL3A-202ENST00000487215 SHROOM2Q13796 1616 aa34.9■■■■□ 3.18
SMPDL3A-202ENST00000487215 ERICH3Q5RHP9 1530 aa34.89■■■■□ 3.18
SMPDL3A-202ENST00000487215 AEBP2Q6ZN18 517 aaPredicted RBP34.72■■■■□ 3.15
SMPDL3A-202ENST00000487215 PRG4Q92954 1404 aaPredicted RBP34.7■■■■□ 3.15
SMPDL3A-202ENST00000487215 JPH4Q96JJ6 628 aa34.64■■■■□ 3.14
SMPDL3A-202ENST00000487215 RUSC2Q8N2Y8 1516 aa34.6■■■■□ 3.13
Retrieved 100 of 20,778 RNA–protein pairs in 66.7 ms