RNA–Protein interactions for RNA: ENST00000487193.1

ATPAF1-205, Transcript of ATP synthase mitochondrial F1 complex assembly factor 1, humanhuman

TSL 5

Gene ATPAF1, Length 513 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATPAF1-205ENST00000487193 NISCHQ9Y2I1 1504 aa31.85■■■□□ 2.69
ATPAF1-205ENST00000487193 ABCC9O60706 1549 aa30.35■■■□□ 2.45
ATPAF1-205ENST00000487193 DNAJC5BQ9UF47 199 aa29.59■■■□□ 2.33
ATPAF1-205ENST00000487193 CCDC180Q9P1Z9 1646 aa29.01■■■□□ 2.23
ATPAF1-205ENST00000487193 RB1CC1Q8TDY2 1594 aa28.26■■■□□ 2.11
ATPAF1-205ENST00000487193 PABPN1Q86U42 306 aaKnown RBP eCLIP28.16■■■□□ 2.1
ATPAF1-205ENST00000487193 DNAJC5Q9H3Z4 198 aa27.97■■■□□ 2.07
ATPAF1-205ENST00000487193 NACADO15069 1562 aa27.74■■■□□ 2.03
ATPAF1-205ENST00000487193 DCAF8L2P0C7V8 631 aa27.69■■■□□ 2.02
ATPAF1-205ENST00000487193 UNC13AQ9UPW8 1703 aa27.67■■■□□ 2.02
ATPAF1-205ENST00000487193 BICRAQ9NZM4 1560 aa27.49■■□□□ 1.99
ATPAF1-205ENST00000487193 CECR2Q9BXF3 1484 aa27.42■■□□□ 1.98
ATPAF1-205ENST00000487193 CC2D2AQ9P2K1 1620 aa27.3■■□□□ 1.96
ATPAF1-205ENST00000487193 EIF4G1Q04637 1599 aaKnown RBP26.91■■□□□ 1.9
ATPAF1-205ENST00000487193 MYO15BQ96JP2 1530 aa26.86■■□□□ 1.89
ATPAF1-205ENST00000487193 SHROOM4Q9ULL8 1493 aa26.83■■□□□ 1.89
ATPAF1-205ENST00000487193 CUX2O14529 1486 aa26.52■■□□□ 1.84
ATPAF1-205ENST00000487193 SCRIBQ14160 1630 aa26.5■■□□□ 1.83
ATPAF1-205ENST00000487193 TRIM41Q8WV44 630 aa26.4■■□□□ 1.82
ATPAF1-205ENST00000487193 ERCC6Q03468 1493 aa26.28■■□□□ 1.8
ATPAF1-205ENST00000487193 DCAF1Q9Y4B6 1507 aa26.12■■□□□ 1.77
ATPAF1-205ENST00000487193 ZCCHC6Q5VYS8 1495 aaKnown RBP26.09■■□□□ 1.77
ATPAF1-205ENST00000487193 NESP48681 1621 aa25.74■■□□□ 1.71
ATPAF1-205ENST00000487193 NCAPD3P42695 1498 aa25.65■■□□□ 1.7
ATPAF1-205ENST00000487193 THOC2Q8NI27 1593 aaKnown RBP25.6■■□□□ 1.69
ATPAF1-205ENST00000487193 SMARCA2P51531 1590 aa25.45■■□□□ 1.66
ATPAF1-205ENST00000487193 ATAD2BQ9ULI0 1458 aa25.43■■□□□ 1.66
ATPAF1-205ENST00000487193 KIF21AQ7Z4S6 1674 aa25.32■■□□□ 1.64
ATPAF1-205ENST00000487193 HMGXB3Q12766 1538 aa25.3■■□□□ 1.64
ATPAF1-205ENST00000487193 OSCARQ8IYS5 282 aa25.25■■□□□ 1.63
ATPAF1-205ENST00000487193 LAMC3Q9Y6N6 1575 aa25.25■■□□□ 1.63
ATPAF1-205ENST00000487193 BAZ1AQ9NRL2 1556 aaPredicted RBP25.21■■□□□ 1.63
ATPAF1-205ENST00000487193 PDS5BQ9NTI5 1447 aa25.19■■□□□ 1.62
ATPAF1-205ENST00000487193 BAZ1BQ9UIG0 1483 aaKnown RBP25.14■■□□□ 1.61
ATPAF1-205ENST00000487193 AEBP2Q6ZN18 517 aaPredicted RBP25.1■■□□□ 1.61
ATPAF1-205ENST00000487193 SMARCA4P51532 1647 aa25.09■■□□□ 1.61
ATPAF1-205ENST00000487193 MRC2Q9UBG0 1479 aa25.03■■□□□ 1.6
ATPAF1-205ENST00000487193 RIMBP3CA6NJZ7 1639 aa25■■□□□ 1.59
ATPAF1-205ENST00000487193 RIMBP3BA6NNM3 1639 aa25■■□□□ 1.59
ATPAF1-205ENST00000487193 RIMBP3Q9UFD9 1639 aa25■■□□□ 1.59
ATPAF1-205ENST00000487193 WDR62O43379 1518 aa24.96■■□□□ 1.59
ATPAF1-205ENST00000487193 TRHP20396 242 aaPredicted RBP24.96■■□□□ 1.59
ATPAF1-205ENST00000487193 CADPSQ9ULU8 1353 aa24.85■■□□□ 1.57
ATPAF1-205ENST00000487193 CYB5RLQ6IPT4 315 aa24.81■■□□□ 1.56
ATPAF1-205ENST00000487193 PEG3Q9GZU2 1588 aa24.77■■□□□ 1.56
ATPAF1-205ENST00000487193 ARHGEF11O15085 1522 aa24.76■■□□□ 1.55
ATPAF1-205ENST00000487193 CEP164Q9UPV0 1460 aa24.7■■□□□ 1.55
ATPAF1-205ENST00000487193 FANCD2Q9BXW9 1451 aa24.58■■□□□ 1.53
ATPAF1-205ENST00000487193 MROH2BQ7Z745 1585 aa24.57■■□□□ 1.52
ATPAF1-205ENST00000487193 URB2Q14146 1524 aaKnown RBP24.45■■□□□ 1.51
ATPAF1-205ENST00000487193 ARAP1Q96P48 1450 aa24.45■■□□□ 1.5
ATPAF1-205ENST00000487193 ZNF608Q9ULD9 1512 aaPredicted RBP24.39■■□□□ 1.49
ATPAF1-205ENST00000487193 CFTRP13569 1480 aa24.28■■□□□ 1.48
ATPAF1-205ENST00000487193 WIZO95785 1651 aa24.25■■□□□ 1.47
ATPAF1-205ENST00000487193 FBLN2P98095 1184 aa24.24■■□□□ 1.47
ATPAF1-205ENST00000487193 IFT140Q96RY7 1462 aa24.23■■□□□ 1.47
ATPAF1-205ENST00000487193 CHD1O14646 1710 aa24.22■■□□□ 1.47
ATPAF1-205ENST00000487193 ILDR1Q86SU0 546 aaPredicted RBP24.19■■□□□ 1.46
ATPAF1-205ENST00000487193 RSF1Q96T23 1441 aaPredicted RBP24.17■■□□□ 1.46
ATPAF1-205ENST00000487193 EIF4G3O43432 1585 aaKnown RBP24.12■■□□□ 1.45
ATPAF1-205ENST00000487193 AQRO60306 1485 aaKnown RBP eCLIP24.05■■□□□ 1.44
ATPAF1-205ENST00000487193 TOPBP1Q92547 1522 aa23.97■■□□□ 1.43
ATPAF1-205ENST00000487193 PRDM2Q13029 1718 aa23.93■■□□□ 1.42
ATPAF1-205ENST00000487193 TARBP1Q13395 1621 aaKnown RBP23.84■■□□□ 1.41
ATPAF1-205ENST00000487193 CLASP1Q7Z460 1538 aa23.84■■□□□ 1.41
ATPAF1-205ENST00000487193 ABCC8Q09428 1581 aa23.79■■□□□ 1.4
ATPAF1-205ENST00000487193 CHMP7Q8WUX9 453 aaPredicted RBP23.79■■□□□ 1.4
ATPAF1-205ENST00000487193 TOP2AP11388 1531 aaKnown RBP23.77■■□□□ 1.4
ATPAF1-205ENST00000487193 DNMBPQ6XZF7 1577 aa23.75■■□□□ 1.39
ATPAF1-205ENST00000487193 GAPVD1Q14C86 1478 aa23.75■■□□□ 1.39
ATPAF1-205ENST00000487193 SYNJ1O43426 1573 aa23.74■■□□□ 1.39
ATPAF1-205ENST00000487193 TDRD9Q8NDG6 1382 aaKnown RBP23.73■■□□□ 1.39
ATPAF1-205ENST00000487193 SNAPC4Q5SXM2 1469 aa23.71■■□□□ 1.39
ATPAF1-205ENST00000487193 RAD54L2Q9Y4B4 1467 aa23.67■■□□□ 1.38
ATPAF1-205ENST00000487193 POLA1P09884 1462 aaPredicted RBP23.65■■□□□ 1.38
ATPAF1-205ENST00000487193 KDM4FA0A1W2PPD8 638 aa23.65■■□□□ 1.38
ATPAF1-205ENST00000487193 CCDC88BA6NC98 1476 aa23.59■■□□□ 1.37
ATPAF1-205ENST00000487193 SOGA1O94964 1423 aa23.59■■□□□ 1.37
ATPAF1-205ENST00000487193 KIF13AQ9H1H9 1805 aa23.54■■□□□ 1.36
ATPAF1-205ENST00000487193 MAGI1Q96QZ7 1491 aaPredicted RBP23.53■■□□□ 1.36
ATPAF1-205ENST00000487193 SYNJ2O15056 1496 aa23.5■■□□□ 1.35
ATPAF1-205ENST00000487193 ERCC6L2Q5T890 1561 aa23.48■■□□□ 1.35
ATPAF1-205ENST00000487193 GRIN2BQ13224 1484 aa23.45■■□□□ 1.34
ATPAF1-205ENST00000487193 WDR97A6NE52 1622 aa23.4■■□□□ 1.34
ATPAF1-205ENST00000487193 FAM69CQ0P6D2 419 aa23.39■■□□□ 1.33
ATPAF1-205ENST00000487193 FGD5Q6ZNL6 1462 aa23.35■■□□□ 1.33
ATPAF1-205ENST00000487193 PBRM1Q86U86 1689 aa23.29■■□□□ 1.32
ATPAF1-205ENST00000487193 CEP170Q5SW79 1584 aa23.28■■□□□ 1.32
ATPAF1-205ENST00000487193 KDM6BO15054 1643 aa23.27■■□□□ 1.32
ATPAF1-205ENST00000487193 ABCC10Q5T3U5 1492 aa23.23■■□□□ 1.31
ATPAF1-205ENST00000487193 NPM1P06748 294 aaKnown RBP eCLIP23.18■■□□□ 1.3
ATPAF1-205ENST00000487193 HECW2Q9P2P5 1572 aa23.17■■□□□ 1.3
ATPAF1-205ENST00000487193 TSPOAP1O95153 1857 aa23.16■■□□□ 1.3
ATPAF1-205ENST00000487193 CUX1P39880 1505 aa23.14■■□□□ 1.3
ATPAF1-205ENST00000487193 GRIN2AQ12879 1464 aa23.14■■□□□ 1.29
ATPAF1-205ENST00000487193 FBXO41Q8TF61 875 aa23.14■■□□□ 1.29
ATPAF1-205ENST00000487193 DIP2BQ9P265 1576 aa23.11■■□□□ 1.29
ATPAF1-205ENST00000487193 ADGRL1O94910 1474 aa23.11■■□□□ 1.29
ATPAF1-205ENST00000487193 SHROOM2Q13796 1616 aa23.1■■□□□ 1.29
ATPAF1-205ENST00000487193 NUP160Q12769 1436 aa23.08■■□□□ 1.28
Retrieved 100 of 20,778 RNA–protein pairs in 38.9 ms