RNA–Protein interactions for RNA: ENST00000486991.1

NR1H3-223, Transcript of nuclear receptor subfamily 1 group H member 3, humanhuman

TSL 4

Gene NR1H3, Length 539 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NR1H3-223ENST00000486991 NISCHQ9Y2I1 1504 aa32.06■■■□□ 2.72
NR1H3-223ENST00000486991 ABCC9O60706 1549 aa28.99■■■□□ 2.23
NR1H3-223ENST00000486991 CCDC180Q9P1Z9 1646 aa28.69■■■□□ 2.18
NR1H3-223ENST00000486991 RB1CC1Q8TDY2 1594 aa27.41■■□□□ 1.98
NR1H3-223ENST00000486991 DNAJC5BQ9UF47 199 aa27.38■■□□□ 1.97
NR1H3-223ENST00000486991 DCAF8L2P0C7V8 631 aa27.22■■□□□ 1.95
NR1H3-223ENST00000486991 NACADO15069 1562 aa27.17■■□□□ 1.94
NR1H3-223ENST00000486991 PABPN1Q86U42 306 aaKnown RBP eCLIP27.03■■□□□ 1.92
NR1H3-223ENST00000486991 UNC13AQ9UPW8 1703 aa26.87■■□□□ 1.89
NR1H3-223ENST00000486991 MYO15BQ96JP2 1530 aa26.73■■□□□ 1.87
NR1H3-223ENST00000486991 ZCCHC6Q5VYS8 1495 aaKnown RBP26.71■■□□□ 1.87
NR1H3-223ENST00000486991 BICRAQ9NZM4 1560 aa26.7■■□□□ 1.86
NR1H3-223ENST00000486991 DCAF1Q9Y4B6 1507 aa26.55■■□□□ 1.84
NR1H3-223ENST00000486991 SCRIBQ14160 1630 aa26.28■■□□□ 1.8
NR1H3-223ENST00000486991 SHROOM4Q9ULL8 1493 aa26.12■■□□□ 1.77
NR1H3-223ENST00000486991 CC2D2AQ9P2K1 1620 aa26.12■■□□□ 1.77
NR1H3-223ENST00000486991 CECR2Q9BXF3 1484 aa26.06■■□□□ 1.76
NR1H3-223ENST00000486991 EIF4G1Q04637 1599 aaKnown RBP26.01■■□□□ 1.75
NR1H3-223ENST00000486991 NCAPD3P42695 1498 aa25.11■■□□□ 1.61
NR1H3-223ENST00000486991 DNAJC5Q9H3Z4 198 aa25.11■■□□□ 1.61
NR1H3-223ENST00000486991 ATAD2BQ9ULI0 1458 aa25.06■■□□□ 1.6
NR1H3-223ENST00000486991 SMARCA4P51532 1647 aa25■■□□□ 1.59
NR1H3-223ENST00000486991 ERCC6Q03468 1493 aa24.96■■□□□ 1.59
NR1H3-223ENST00000486991 SMARCA2P51531 1590 aa24.92■■□□□ 1.58
NR1H3-223ENST00000486991 CUX2O14529 1486 aa24.89■■□□□ 1.58
NR1H3-223ENST00000486991 NESP48681 1621 aa24.89■■□□□ 1.57
NR1H3-223ENST00000486991 HMGXB3Q12766 1538 aa24.88■■□□□ 1.57
NR1H3-223ENST00000486991 BAZ1AQ9NRL2 1556 aaPredicted RBP24.84■■□□□ 1.57
NR1H3-223ENST00000486991 BAZ1BQ9UIG0 1483 aaKnown RBP24.8■■□□□ 1.56
NR1H3-223ENST00000486991 PEG3Q9GZU2 1588 aa24.75■■□□□ 1.55
NR1H3-223ENST00000486991 MROH2BQ7Z745 1585 aa24.73■■□□□ 1.55
NR1H3-223ENST00000486991 THOC2Q8NI27 1593 aaKnown RBP24.57■■□□□ 1.52
NR1H3-223ENST00000486991 LAMC3Q9Y6N6 1575 aa24.54■■□□□ 1.52
NR1H3-223ENST00000486991 KIF21AQ7Z4S6 1674 aa24.51■■□□□ 1.51
NR1H3-223ENST00000486991 WIZO95785 1651 aa24.47■■□□□ 1.51
NR1H3-223ENST00000486991 PDS5BQ9NTI5 1447 aa24.42■■□□□ 1.5
NR1H3-223ENST00000486991 CADPSQ9ULU8 1353 aa24.37■■□□□ 1.49
NR1H3-223ENST00000486991 RSF1Q96T23 1441 aaPredicted RBP24.34■■□□□ 1.49
NR1H3-223ENST00000486991 MRC2Q9UBG0 1479 aa24.25■■□□□ 1.47
NR1H3-223ENST00000486991 WDR62O43379 1518 aa24.17■■□□□ 1.46
NR1H3-223ENST00000486991 TOP2AP11388 1531 aaKnown RBP24.17■■□□□ 1.46
NR1H3-223ENST00000486991 FANCD2Q9BXW9 1451 aa24.12■■□□□ 1.45
NR1H3-223ENST00000486991 CEP164Q9UPV0 1460 aa24.12■■□□□ 1.45
NR1H3-223ENST00000486991 CFTRP13569 1480 aa24.06■■□□□ 1.44
NR1H3-223ENST00000486991 TRIM41Q8WV44 630 aa24.05■■□□□ 1.44
NR1H3-223ENST00000486991 URB2Q14146 1524 aaKnown RBP23.96■■□□□ 1.43
NR1H3-223ENST00000486991 PRDM2Q13029 1718 aa23.86■■□□□ 1.41
NR1H3-223ENST00000486991 CCDC88BA6NC98 1476 aa23.85■■□□□ 1.41
NR1H3-223ENST00000486991 OSCARQ8IYS5 282 aa23.81■■□□□ 1.4
NR1H3-223ENST00000486991 ZNF608Q9ULD9 1512 aaPredicted RBP23.71■■□□□ 1.39
NR1H3-223ENST00000486991 TOPBP1Q92547 1522 aa23.64■■□□□ 1.38
NR1H3-223ENST00000486991 IFT140Q96RY7 1462 aa23.63■■□□□ 1.37
NR1H3-223ENST00000486991 RIMBP3CA6NJZ7 1639 aa23.54■■□□□ 1.36
NR1H3-223ENST00000486991 RIMBP3BA6NNM3 1639 aa23.54■■□□□ 1.36
NR1H3-223ENST00000486991 RIMBP3Q9UFD9 1639 aa23.54■■□□□ 1.36
NR1H3-223ENST00000486991 DNMBPQ6XZF7 1577 aa23.52■■□□□ 1.36
NR1H3-223ENST00000486991 EIF4G3O43432 1585 aaKnown RBP23.51■■□□□ 1.35
NR1H3-223ENST00000486991 ABCC8Q09428 1581 aa23.48■■□□□ 1.35
NR1H3-223ENST00000486991 AQRO60306 1485 aaKnown RBP eCLIP23.48■■□□□ 1.357e-9■■■■■ 34.8
NR1H3-223ENST00000486991 TARBP1Q13395 1621 aaKnown RBP23.44■■□□□ 1.34
NR1H3-223ENST00000486991 ARHGEF11O15085 1522 aa23.43■■□□□ 1.34
NR1H3-223ENST00000486991 SUPT5HO00267 1087 aaKnown RBP23.4■■□□□ 1.34
NR1H3-223ENST00000486991 POLA1P09884 1462 aaPredicted RBP23.4■■□□□ 1.34
NR1H3-223ENST00000486991 CHD1O14646 1710 aa23.39■■□□□ 1.33
NR1H3-223ENST00000486991 RAD54L2Q9Y4B4 1467 aa23.38■■□□□ 1.33
NR1H3-223ENST00000486991 FBLN2P98095 1184 aa23.37■■□□□ 1.33
NR1H3-223ENST00000486991 CYB5RLQ6IPT4 315 aa23.33■■□□□ 1.33
NR1H3-223ENST00000486991 TDRD9Q8NDG6 1382 aaKnown RBP23.32■■□□□ 1.32
NR1H3-223ENST00000486991 SOGA1O94964 1423 aa23.3■■□□□ 1.32
NR1H3-223ENST00000486991 FGD5Q6ZNL6 1462 aa23.24■■□□□ 1.31
NR1H3-223ENST00000486991 CUX1P39880 1505 aa23.23■■□□□ 1.31
NR1H3-223ENST00000486991 ARAP1Q96P48 1450 aa23.22■■□□□ 1.31
NR1H3-223ENST00000486991 SNAPC4Q5SXM2 1469 aa23.2■■□□□ 1.3
NR1H3-223ENST00000486991 CHMP7Q8WUX9 453 aaPredicted RBP23.12■■□□□ 1.29
NR1H3-223ENST00000486991 TRHP20396 242 aaPredicted RBP23.1■■□□□ 1.29
NR1H3-223ENST00000486991 CLASP1Q7Z460 1538 aa23.08■■□□□ 1.29
NR1H3-223ENST00000486991 WDR97A6NE52 1622 aa23.08■■□□□ 1.28
NR1H3-223ENST00000486991 GRIN2BQ13224 1484 aa23.07■■□□□ 1.28
NR1H3-223ENST00000486991 MAGI1Q96QZ7 1491 aaPredicted RBP23.05■■□□□ 1.28
NR1H3-223ENST00000486991 SYNJ1O43426 1573 aa23.01■■□□□ 1.27
NR1H3-223ENST00000486991 SYNJ2O15056 1496 aa23■■□□□ 1.27
NR1H3-223ENST00000486991 PBRM1Q86U86 1689 aa23■■□□□ 1.27
NR1H3-223ENST00000486991 GAPVD1Q14C86 1478 aa22.99■■□□□ 1.27
NR1H3-223ENST00000486991 BIVM-ERCC5R4GMW8 1640 aa22.99■■□□□ 1.27
NR1H3-223ENST00000486991 TOP2BQ02880 1626 aa22.96■■□□□ 1.27
NR1H3-223ENST00000486991 ABCA10Q8WWZ4 1543 aa22.93■■□□□ 1.26
NR1H3-223ENST00000486991 ABCA5Q8WWZ7 1642 aa22.92■■□□□ 1.26
NR1H3-223ENST00000486991 WRNQ14191 1432 aaPredicted RBP eCLIP22.91■■□□□ 1.26
NR1H3-223ENST00000486991 ERCC6L2Q5T890 1561 aa22.82■■□□□ 1.24
NR1H3-223ENST00000486991 GRIN2AQ12879 1464 aa22.79■■□□□ 1.24
NR1H3-223ENST00000486991 ADAMTS12P58397 1594 aa22.76■■□□□ 1.23
NR1H3-223ENST00000486991 CEP170Q5SW79 1584 aa22.76■■□□□ 1.23
NR1H3-223ENST00000486991 NUP160Q12769 1436 aa22.7■■□□□ 1.22
NR1H3-223ENST00000486991 FHAD1B1AJZ9 1412 aa22.68■■□□□ 1.22
NR1H3-223ENST00000486991 ERICH3Q5RHP9 1530 aa22.62■■□□□ 1.21
NR1H3-223ENST00000486991 SHROOM2Q13796 1616 aa22.61■■□□□ 1.21
NR1H3-223ENST00000486991 PRG4Q92954 1404 aaPredicted RBP22.54■■□□□ 1.2
NR1H3-223ENST00000486991 JPH4Q96JJ6 628 aa22.52■■□□□ 1.2
NR1H3-223ENST00000486991 AEBP2Q6ZN18 517 aaPredicted RBP22.47■■□□□ 1.19
NR1H3-223ENST00000486991 RUSC2Q8N2Y8 1516 aa22.44■■□□□ 1.18
Retrieved 100 of 20,778 RNA–protein pairs in 179.2 ms